Wall clock time and date at job start Tue Mar 31 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21252 * 119.99867 * 2 1 4 4 C 1.47186 * 119.99818 * 179.97438 * 2 1 3 5 5 C 1.39967 * 120.10478 * 359.97438 * 4 2 1 6 6 C 1.37985 * 120.11823 * 179.97438 * 5 4 2 7 7 C 1.38138 * 120.32814 * 0.02562 * 6 5 4 8 8 C 1.39704 * 120.19728 * 0.04021 * 7 6 5 9 9 C 1.47866 * 120.05746 * 179.97438 * 8 7 6 10 10 O 1.21551 * 119.99877 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00064 * 359.94097 * 9 8 7 12 12 C 1.46505 * 119.99698 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46733 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47241 * 300.00175 * 13 12 11 15 15 C 1.53004 * 109.47165 * 59.99852 * 13 12 11 16 16 C 1.50696 * 109.47082 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00012 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00179 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99927 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00155 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47309 * 90.00193 * 20 18 16 22 22 H 1.48500 * 109.47426 * 210.00280 * 20 18 16 23 23 H 1.48504 * 109.47212 * 330.00063 * 20 18 16 24 24 C 1.39268 * 119.88484 * 359.93763 * 8 7 6 25 25 H 1.09007 * 109.47286 * 239.99993 * 1 2 3 26 26 H 1.08998 * 109.47197 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47008 * 120.00188 * 1 2 3 28 28 H 1.08006 * 119.94187 * 0.02591 * 5 4 2 29 29 H 1.08002 * 119.83611 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.90401 * 180.02562 * 7 6 5 31 31 H 0.96995 * 120.00080 * 359.97438 * 11 9 8 32 32 H 1.08998 * 109.47060 * 299.99354 * 12 11 9 33 33 H 1.08996 * 109.47075 * 60.00190 * 12 11 9 34 34 H 1.08994 * 109.47792 * 60.00064 * 14 13 12 35 35 H 1.09003 * 109.47109 * 180.02562 * 14 13 12 36 36 H 1.09004 * 109.46891 * 299.99755 * 14 13 12 37 37 H 1.09003 * 109.46795 * 59.99528 * 15 13 12 38 38 H 1.08993 * 109.47004 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.47280 * 300.00214 * 15 13 12 40 40 H 0.97004 * 120.00385 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.16517 * 180.32041 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5452 -2.4881 0.0017 6 6 2.2348 -3.6833 0.0017 7 6 3.6162 -3.6915 0.0011 8 6 4.3261 -2.4883 0.0014 9 6 5.8047 -2.5008 0.0014 10 8 6.4213 -1.4533 0.0012 11 7 6.4688 -3.6737 0.0023 12 6 7.9338 -3.6859 0.0018 13 6 8.4316 -5.1327 0.0037 14 6 7.9160 -5.8478 1.2541 15 6 7.9150 -5.8515 -1.2443 16 6 9.9385 -5.1454 0.0024 17 1 10.4864 -4.2147 0.0001 18 6 10.6178 -6.3452 0.0033 19 7 9.9507 -7.4786 0.0046 20 14 12.4857 -6.3610 0.0010 21 1 12.9824 -6.3633 1.4005 22 1 12.9697 -7.5785 -0.6980 23 1 12.9901 -5.1536 -0.7013 24 6 3.6387 -1.2771 0.0010 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4652 -2.4889 0.0016 29 1 1.6919 -4.6169 0.0021 30 1 4.1490 -4.6310 0.0007 31 1 5.9767 -4.5096 0.0034 32 1 8.3010 -3.1762 -0.8889 33 1 8.3017 -3.1743 0.8911 34 1 6.8261 -5.8387 1.2546 35 1 8.2710 -6.8784 1.2556 36 1 8.2840 -5.3358 2.1432 37 1 8.2822 -5.3419 -2.1352 38 1 8.2700 -6.8820 -1.2432 39 1 6.8251 -5.8422 -1.2439 40 1 10.4286 -8.3227 0.0048 41 1 4.1829 -0.3443 -0.0040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457999024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:52 Heat of formation + Delta-G solvation = -58.301845 kcal Electronic energy + Delta-G solvation = -22303.678495 eV Core-core repulsion = 18955.305855 eV Total energy + Delta-G solvation = -3348.372640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44475 -39.35570 -37.90253 -36.37524 -33.50458 -32.35820 -31.27554 -30.87767 -29.61407 -25.84791 -25.77609 -25.15650 -24.22243 -22.88056 -21.12584 -19.54995 -18.89603 -17.88795 -16.48661 -15.97132 -15.83255 -15.75077 -15.30371 -15.08010 -14.80359 -14.65707 -14.13682 -14.01236 -13.46265 -13.12642 -12.95264 -12.66285 -12.62757 -12.32658 -12.29710 -12.15130 -11.51173 -11.43223 -11.22597 -10.89748 -10.71959 -10.43402 -10.23816 -10.09048 -9.70659 -9.68334 -9.31938 -9.28739 -9.24580 -8.83281 -8.50200 -8.35908 -6.05280 -4.15259 0.31672 0.86856 2.04929 3.03974 3.26907 3.33938 3.37490 3.50677 3.80758 3.81442 4.37742 4.49502 4.61428 4.67076 4.85725 4.94901 5.02684 5.02996 5.21769 5.22328 5.40750 5.62027 5.66774 5.97786 6.03695 6.09066 6.22000 6.28186 6.44737 6.52762 6.72158 6.76168 6.88550 6.94322 6.97243 7.24701 7.30508 7.50980 7.66203 7.95243 7.96690 8.10312 8.34452 8.58091 8.85344 9.50789 10.96261 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.003053 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.072705 B = 9169.224819 C = 9695.934408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.394 3.606 3 O -0.453 6.453 4 C -0.184 4.184 5 C -0.056 4.056 6 C -0.138 4.138 7 C -0.055 4.055 8 C -0.136 4.136 9 C 0.545 3.455 10 O -0.544 6.544 11 N -0.709 5.709 12 C 0.130 3.870 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.006 4.006 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.397 0.603 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.005 0.995 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.005 0.995 40 H 0.260 0.740 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.345 4.624 -0.012 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.272 3.728 3 O -0.329 6.329 4 C -0.185 4.185 5 C -0.074 4.074 6 C -0.156 4.156 7 C -0.074 4.074 8 C -0.139 4.139 9 C 0.331 3.669 10 O -0.423 6.423 11 N -0.360 5.360 12 C 0.008 3.992 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.025 4.025 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.233 0.767 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.497 5.708 -0.018 20.315 hybrid contribution 0.751 -0.700 0.011 1.027 sum -18.746 5.008 -0.007 19.403 Atomic orbital electron populations 1.22245 0.93544 1.05242 1.04537 1.22497 0.91678 0.87491 0.71142 1.90574 1.72162 1.34202 1.35926 1.20486 0.94212 0.95117 1.08725 1.21581 1.00194 0.91390 0.94252 1.21098 0.93947 0.98457 1.02112 1.21702 0.94701 0.97657 0.93362 1.20170 0.94199 0.93910 1.05613 1.18198 0.86529 0.84591 0.77624 1.90764 1.69128 1.31793 1.50584 1.46258 1.09487 1.07432 1.72783 1.21795 0.75772 1.00798 1.00802 1.18364 0.95567 0.87699 0.92850 1.21843 0.95030 1.04396 0.97646 1.21843 0.95018 1.04410 0.97645 1.20980 0.89901 0.92696 1.50891 0.92373 1.24875 0.98355 0.95526 0.94734 1.69796 1.34894 0.97230 1.50581 0.86560 0.85583 0.77541 0.78132 1.20692 1.21252 1.19884 1.21575 0.92730 0.98588 0.89607 0.88763 0.89641 0.88770 0.84696 0.84602 0.84817 0.76665 0.92416 0.92423 0.97627 0.89490 0.95335 0.95331 0.89475 0.97635 0.92978 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 8.93 36.01 0.32 -0.79 16 2 C 0.39 4.09 7.23 -30.68 -0.22 3.86 16 3 O -0.45 -6.56 17.07 5.58 0.10 -6.46 16 4 C -0.18 -1.99 5.86 -105.11 -0.62 -2.60 16 5 C -0.06 -0.43 9.47 -39.03 -0.37 -0.80 16 6 C -0.14 -1.14 10.01 -39.71 -0.40 -1.54 16 7 C -0.06 -0.60 9.54 -39.07 -0.37 -0.98 16 8 C -0.14 -1.93 5.87 -105.03 -0.62 -2.55 16 9 C 0.54 9.83 7.77 -12.32 -0.10 9.73 16 10 O -0.54 -11.80 16.34 5.32 0.09 -11.72 16 11 N -0.71 -12.62 4.91 -61.24 -0.30 -12.92 16 12 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 15 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 16 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 20 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.01 -0.08 9.14 -38.70 -0.35 -0.44 16 25 H 0.09 0.34 8.08 -51.93 -0.42 -0.08 16 26 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.09 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.14 0.56 7.03 -52.48 -0.37 0.19 16 29 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.13 1.30 6.39 -52.49 -0.34 0.96 16 31 H 0.40 6.20 4.18 -40.82 -0.17 6.03 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 35 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.12 6.07 -51.93 -0.31 1.81 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.15 2.31 7.23 -52.49 -0.38 1.93 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -30.97 338.33 -7.62 -38.59 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.51 Total: 3.74 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.59 Total: -9.13 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.22 Total: -35.70 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.97 -7.62 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.711 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds