Wall clock time and date at job start Tue Mar 31 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21252 * 119.99867 * 2 1 4 4 C 1.47186 * 119.99818 * 179.97438 * 2 1 3 5 5 C 1.39967 * 120.10478 * 359.97438 * 4 2 1 6 6 C 1.37985 * 120.11823 * 179.97438 * 5 4 2 7 7 C 1.38138 * 120.32814 * 0.02562 * 6 5 4 8 8 C 1.39704 * 120.19728 * 0.04021 * 7 6 5 9 9 C 1.47866 * 120.05746 * 179.97438 * 8 7 6 10 10 O 1.21551 * 119.99877 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00064 * 359.94097 * 9 8 7 12 12 C 1.46505 * 119.99698 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46733 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47241 * 300.00175 * 13 12 11 15 15 C 1.53004 * 109.47165 * 59.99852 * 13 12 11 16 16 C 1.50696 * 109.47082 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00012 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00179 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99927 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00155 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47309 * 90.00193 * 20 18 16 22 22 H 1.48500 * 109.47426 * 210.00280 * 20 18 16 23 23 H 1.48504 * 109.47212 * 330.00063 * 20 18 16 24 24 C 1.39268 * 119.88484 * 359.93763 * 8 7 6 25 25 H 1.09007 * 109.47286 * 239.99993 * 1 2 3 26 26 H 1.08998 * 109.47197 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47008 * 120.00188 * 1 2 3 28 28 H 1.08006 * 119.94187 * 0.02591 * 5 4 2 29 29 H 1.08002 * 119.83611 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.90401 * 180.02562 * 7 6 5 31 31 H 0.96995 * 120.00080 * 359.97438 * 11 9 8 32 32 H 1.08998 * 109.47060 * 299.99354 * 12 11 9 33 33 H 1.08996 * 109.47075 * 60.00190 * 12 11 9 34 34 H 1.08994 * 109.47792 * 60.00064 * 14 13 12 35 35 H 1.09003 * 109.47109 * 180.02562 * 14 13 12 36 36 H 1.09004 * 109.46891 * 299.99755 * 14 13 12 37 37 H 1.09003 * 109.46795 * 59.99528 * 15 13 12 38 38 H 1.08993 * 109.47004 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.47280 * 300.00214 * 15 13 12 40 40 H 0.97004 * 120.00385 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.16517 * 180.32041 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5452 -2.4881 0.0017 6 6 2.2348 -3.6833 0.0017 7 6 3.6162 -3.6915 0.0011 8 6 4.3261 -2.4883 0.0014 9 6 5.8047 -2.5008 0.0014 10 8 6.4213 -1.4533 0.0012 11 7 6.4688 -3.6737 0.0023 12 6 7.9338 -3.6859 0.0018 13 6 8.4316 -5.1327 0.0037 14 6 7.9160 -5.8478 1.2541 15 6 7.9150 -5.8515 -1.2443 16 6 9.9385 -5.1454 0.0024 17 1 10.4864 -4.2147 0.0001 18 6 10.6178 -6.3452 0.0033 19 7 9.9507 -7.4786 0.0046 20 14 12.4857 -6.3610 0.0010 21 1 12.9824 -6.3633 1.4005 22 1 12.9697 -7.5785 -0.6980 23 1 12.9901 -5.1536 -0.7013 24 6 3.6387 -1.2771 0.0010 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4652 -2.4889 0.0016 29 1 1.6919 -4.6169 0.0021 30 1 4.1490 -4.6310 0.0007 31 1 5.9767 -4.5096 0.0034 32 1 8.3010 -3.1762 -0.8889 33 1 8.3017 -3.1743 0.8911 34 1 6.8261 -5.8387 1.2546 35 1 8.2710 -6.8784 1.2556 36 1 8.2840 -5.3358 2.1432 37 1 8.2822 -5.3419 -2.1352 38 1 8.2700 -6.8820 -1.2432 39 1 6.8251 -5.8422 -1.2439 40 1 10.4286 -8.3227 0.0048 41 1 4.1829 -0.3443 -0.0040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457999024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:51 Heat of formation + Delta-G solvation = -77.324798 kcal Electronic energy + Delta-G solvation = -22304.503392 eV Core-core repulsion = 18955.305855 eV Total energy + Delta-G solvation = -3349.197537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49380 -40.53034 -38.94601 -38.09432 -35.17302 -33.45003 -32.51541 -32.11002 -30.32365 -27.58141 -27.55500 -26.95743 -25.10559 -23.97592 -22.16494 -20.74689 -20.62233 -18.96620 -17.92432 -17.33178 -17.01755 -16.74949 -16.42872 -16.41013 -16.25947 -16.00343 -15.08114 -14.99353 -14.76054 -14.74478 -14.67951 -14.03590 -13.53963 -13.20717 -13.19080 -13.12022 -12.96885 -12.93040 -12.70920 -12.61964 -12.36511 -12.27257 -12.14800 -11.51440 -11.37249 -11.09472 -10.80594 -10.71804 -10.42234 -10.25386 -10.11073 -9.91876 -8.04263 -6.19641 -0.49367 -0.07429 1.26068 1.41413 1.44506 1.52581 1.89645 2.15169 2.46587 2.81191 3.05105 3.19477 3.60648 3.82246 3.95211 4.04762 4.20871 4.31583 4.36484 4.45852 4.54787 4.67902 4.73535 4.77323 4.86672 4.94286 5.02735 5.07902 5.13711 5.16845 5.20003 5.24017 5.29930 5.36935 5.51406 5.65544 5.66005 5.76147 6.13774 6.18719 6.41643 6.51209 6.54463 6.83500 7.16279 7.47959 8.94814 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.003053 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.072705 B = 9169.224819 C = 9695.934408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.392 3.608 3 O -0.512 6.512 4 C -0.195 4.195 5 C -0.026 4.026 6 C -0.125 4.125 7 C -0.054 4.054 8 C -0.161 4.161 9 C 0.542 3.458 10 O -0.594 6.594 11 N -0.700 5.700 12 C 0.145 3.855 13 C 0.053 3.947 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.531 4.531 17 H 0.042 0.958 18 C 0.031 3.969 19 N -0.897 5.897 20 Si 0.944 3.056 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.278 1.278 24 C -0.032 4.032 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.189 0.811 29 H 0.182 0.818 30 H 0.148 0.852 31 H 0.410 0.590 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.355 2.595 -0.003 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.273 3.727 3 O -0.391 6.391 4 C -0.196 4.196 5 C -0.043 4.043 6 C -0.142 4.142 7 C -0.072 4.072 8 C -0.164 4.164 9 C 0.331 3.669 10 O -0.476 6.476 11 N -0.351 5.351 12 C 0.022 3.978 13 C 0.052 3.948 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.570 4.570 17 H 0.060 0.940 18 C -0.169 4.169 19 N -0.536 5.536 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.206 1.206 23 H -0.203 1.203 24 C -0.052 4.052 25 H 0.143 0.857 26 H 0.100 0.900 27 H 0.143 0.857 28 H 0.206 0.794 29 H 0.199 0.801 30 H 0.165 0.835 31 H 0.249 0.751 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.542 3.637 -0.009 23.821 hybrid contribution 1.900 -0.071 0.008 1.901 sum -21.642 3.566 0.000 21.934 Atomic orbital electron populations 1.22302 0.88889 1.06152 1.07278 1.23340 0.94056 0.86359 0.68922 1.90567 1.73713 1.35958 1.38860 1.20734 0.92767 0.97163 1.08915 1.22165 1.02612 0.89457 0.90114 1.21634 0.92594 1.00465 0.99535 1.21934 0.96304 0.96416 0.92578 1.19821 0.91429 0.95645 1.09501 1.18881 0.88460 0.83579 0.75988 1.90728 1.70667 1.33455 1.52772 1.46006 1.07959 1.08235 1.72906 1.21361 0.77937 0.99479 0.99037 1.18355 0.94152 0.88540 0.93760 1.21689 0.97121 1.02543 0.96610 1.21689 0.97111 1.02558 0.96611 1.21257 0.91930 0.92287 1.51503 0.93969 1.25413 1.01556 0.95363 0.94607 1.69884 1.35824 0.97336 1.50519 0.85776 0.81778 0.77338 0.78006 1.20486 1.20601 1.20337 1.21425 0.94643 0.97128 0.91992 0.85663 0.89981 0.85670 0.79389 0.80091 0.83453 0.75100 0.94318 0.94304 0.94206 0.91547 0.96396 0.96391 0.91531 0.94214 0.92903 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 8.93 71.24 0.64 -0.68 16 2 C 0.39 7.62 7.23 28.04 0.20 7.82 16 3 O -0.51 -15.55 17.07 -2.94 -0.05 -15.60 16 4 C -0.19 -3.84 5.86 -20.18 -0.12 -3.96 16 5 C -0.03 -0.26 9.47 22.63 0.21 -0.04 16 6 C -0.12 -1.33 10.01 22.19 0.22 -1.11 16 7 C -0.05 -1.00 9.54 22.60 0.22 -0.79 16 8 C -0.16 -4.59 5.87 -20.13 -0.12 -4.70 16 9 C 0.54 20.40 7.77 86.79 0.67 21.07 16 10 O -0.59 -27.85 16.34 -3.88 -0.06 -27.91 16 11 N -0.70 -25.08 4.91 -465.94 -2.29 -27.37 16 12 C 0.15 6.38 4.50 86.38 0.39 6.77 16 13 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 14 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 15 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 16 C -0.53 -28.26 8.01 25.60 0.21 -28.06 16 17 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 18 C 0.03 1.61 5.15 84.66 0.44 2.04 16 19 N -0.90 -47.18 9.35 21.45 0.20 -46.98 16 20 Si 0.94 42.67 29.54 68.60 2.03 44.69 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.03 -0.94 9.14 22.84 0.21 -0.73 16 25 H 0.13 0.16 8.08 -2.38 -0.02 0.14 16 26 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 27 H 0.13 0.16 8.08 -2.39 -0.02 0.14 16 28 H 0.19 -0.05 7.03 -2.91 -0.02 -0.07 16 29 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 30 H 0.15 2.28 6.39 -2.91 -0.02 2.26 16 31 H 0.41 12.15 4.18 -92.71 -0.39 11.76 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 35 H 0.07 3.20 6.07 -2.39 -0.01 3.19 16 36 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 3.21 6.07 -2.39 -0.01 3.20 16 39 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 40 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 41 H 0.11 3.85 7.23 -2.91 -0.02 3.83 16 Total: -1.00 -74.53 338.33 4.79 -69.74 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.66 Total: 12.86 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.30 Total: -9.44 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.09 Total: -74.35 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -0.11 Total: -43.51 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.53 4.79 -69.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.582 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds