Wall clock time and date at job start Tue Mar 31 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46863 * 2 1 4 4 C 1.36750 * 120.00300 * 95.93854 * 3 2 1 5 5 H 1.08000 * 120.00261 * 221.14121 * 4 3 2 6 6 C 1.39100 * 119.99664 * 41.13724 * 4 3 2 7 7 N 1.31341 * 120.00122 * 14.03197 * 6 4 3 8 8 Si 1.86804 * 119.99835 * 194.03612 * 6 4 3 9 9 H 1.48503 * 109.47089 * 59.99661 * 8 6 4 10 10 H 1.48499 * 109.46872 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46752 * 299.99748 * 8 6 4 12 12 C 1.34780 * 120.00407 * 275.66149 * 3 2 1 13 13 O 1.21777 * 120.00387 * 180.02562 * 12 3 2 14 14 C 1.41793 * 119.99574 * 359.97438 * 12 3 2 15 15 C 1.35154 * 119.99811 * 171.90810 * 14 12 3 16 16 C 1.46890 * 120.00215 * 348.40370 * 15 14 12 17 17 C 1.39959 * 120.21142 * 316.02556 * 16 15 14 18 18 C 1.37753 * 119.87555 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.83978 * 179.97438 * 18 17 16 20 20 C 1.38580 * 120.31866 * 359.97438 * 18 17 16 21 21 C 1.38136 * 120.44454 * 359.97438 * 20 18 17 22 22 C 1.38595 * 120.11177 * 359.74802 * 21 20 18 23 23 O 1.35690 * 120.16089 * 180.24880 * 22 21 20 24 24 C 1.42902 * 116.99974 * 0.25448 * 23 22 21 25 25 H 1.09000 * 109.47135 * 60.00254 * 1 2 3 26 26 H 1.08998 * 109.47042 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47224 * 299.99675 * 1 2 3 28 28 H 1.09002 * 109.47469 * 240.00448 * 2 1 3 29 29 H 1.08998 * 109.47585 * 119.99999 * 2 1 3 30 30 H 0.96997 * 119.99932 * 180.02562 * 7 6 4 31 31 H 1.07994 * 120.00212 * 351.90860 * 14 12 3 32 32 H 1.07998 * 120.00029 * 168.40203 * 15 14 12 33 33 H 1.07996 * 120.06626 * 359.97438 * 17 16 15 34 34 H 1.09002 * 109.47602 * 89.99719 * 19 18 17 35 35 H 1.08998 * 109.47241 * 209.99871 * 19 18 17 36 36 H 1.09000 * 109.47423 * 329.99701 * 19 18 17 37 37 H 1.08000 * 119.77577 * 180.02562 * 20 18 17 38 38 H 1.07998 * 119.94543 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.47244 * 299.99830 * 24 23 22 40 40 H 1.09000 * 109.47201 * 60.00402 * 24 23 22 41 41 H 1.09004 * 109.46757 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 1.9851 1.1779 5 1 2.0892 3.0148 1.3564 6 6 3.0619 1.2731 2.1462 7 7 3.6315 0.1305 1.8375 8 14 3.1921 1.9418 3.8856 9 1 1.8316 2.0892 4.4623 10 1 3.9846 1.0023 4.7190 11 1 3.8641 3.2658 3.8578 12 6 2.1343 2.0551 -1.1615 13 8 2.5407 3.2030 -1.1615 14 6 1.7843 1.4268 -2.3835 15 6 1.7433 2.1473 -3.5262 16 6 1.8080 3.6138 -3.4726 17 6 1.0543 4.3179 -2.5266 18 6 1.1206 5.6931 -2.4821 19 6 0.3083 6.4505 -1.4635 20 6 1.9308 6.3835 -3.3694 21 6 2.6811 5.7018 -4.3078 22 6 2.6325 4.3179 -4.3649 23 8 3.3730 3.6471 -5.2830 24 6 4.1867 4.4307 -6.1582 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.1195 -0.3662 2.5128 31 1 1.5506 0.3726 -2.4012 32 1 1.6629 1.6449 -4.4788 33 1 0.4219 3.7841 -1.8327 34 1 0.8926 6.5739 -0.5516 35 1 0.0470 7.4304 -1.8629 36 1 -0.6023 5.8950 -1.2391 37 1 1.9765 7.4617 -3.3265 38 1 3.3094 6.2480 -4.9958 39 1 3.5550 5.1095 -6.7310 40 1 4.9010 5.0075 -5.5708 41 1 4.7252 3.7724 -6.8400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491235446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:10 Heat of formation + Delta-G solvation = -12.701320 kcal Electronic energy + Delta-G solvation = -23427.495075 eV Core-core repulsion = 20081.099823 eV Total energy + Delta-G solvation = -3346.395253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.89765 -38.67088 -37.16787 -35.12959 -33.20604 -32.04447 -31.25535 -29.42136 -29.34851 -27.55419 -25.68577 -25.29485 -23.26924 -22.20419 -21.06533 -20.40387 -17.99356 -17.52051 -16.74775 -16.35115 -15.75285 -15.44766 -14.97549 -14.58812 -14.04465 -13.85515 -13.68546 -13.35899 -13.27378 -12.98239 -12.81993 -12.69696 -12.06814 -11.88172 -11.80509 -11.67056 -11.63276 -11.48067 -11.05033 -11.02568 -10.86076 -10.55674 -10.47491 -10.37221 -10.31394 -10.04915 -9.23315 -8.90775 -8.38828 -7.70798 -7.27989 -7.22655 -6.30579 -3.96688 1.39535 2.01317 2.51048 3.22120 3.25065 3.28540 3.58258 4.16432 4.32516 4.57505 5.04817 5.09210 5.14495 5.23091 5.24417 5.29101 5.38235 5.53511 5.64088 5.75575 5.82575 5.89914 5.96895 6.04130 6.15670 6.19625 6.27585 6.31346 6.34121 6.55343 6.60304 6.67802 6.73598 6.91470 6.97328 7.08184 7.22390 7.30320 7.33628 7.57691 7.81844 8.33061 8.59778 9.25613 9.43759 10.12656 10.72141 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.005129 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.998359 B = 5457.958659 C = 5942.893786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.428 5.428 4 C -0.298 4.298 5 H 0.089 0.911 6 C 0.036 3.964 7 N -0.871 5.871 8 Si 0.920 3.080 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.475 3.525 13 O -0.570 6.570 14 C -0.185 4.185 15 C -0.059 4.059 16 C -0.067 4.067 17 C 0.011 3.989 18 C -0.137 4.137 19 C -0.101 4.101 20 C -0.081 4.081 21 C -0.221 4.221 22 C 0.127 3.873 23 O -0.316 6.316 24 C 0.031 3.969 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.269 0.731 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 4.946 -10.740 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.145 5.145 4 C -0.427 4.427 5 H 0.106 0.894 6 C -0.168 4.168 7 N -0.508 5.508 8 Si 0.747 3.253 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.267 3.733 13 O -0.456 6.456 14 C -0.206 4.206 15 C -0.080 4.080 16 C -0.068 4.068 17 C -0.007 4.007 18 C -0.138 4.138 19 C -0.158 4.158 20 C -0.099 4.099 21 C -0.240 4.240 22 C 0.082 3.918 23 O -0.229 6.229 24 C -0.065 4.065 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.517 5.118 -10.599 12.607 hybrid contribution 0.488 0.183 0.843 0.991 sum -4.029 5.301 -9.757 11.812 Atomic orbital electron populations 1.22230 0.98162 1.00295 1.01509 1.21573 0.91582 0.85826 1.03745 1.43538 1.54064 1.11675 1.05263 1.19364 1.33280 0.98437 0.91629 0.89367 1.25501 0.94402 0.96326 1.00607 1.69813 1.31440 1.15120 1.34471 0.86097 0.78440 0.78919 0.81843 1.19828 1.20948 1.19713 1.17255 0.83892 0.88104 0.84024 1.90718 1.50659 1.17833 1.86408 1.22455 1.02928 1.00479 0.94714 1.21893 0.97148 0.91775 0.97192 1.18099 0.99276 0.92906 0.96532 1.20773 0.95353 0.92573 0.92021 1.19551 1.01268 0.93816 0.99116 1.20623 0.98824 0.98715 0.97662 1.20658 0.95760 0.98784 0.94716 1.20859 1.06187 0.92759 1.04216 1.19027 0.92504 0.90274 0.89982 1.85991 1.56316 1.35727 1.44868 1.22956 0.93947 0.96772 0.92812 0.93757 0.93189 0.92575 0.93247 0.87430 0.92095 0.86234 0.86119 0.86273 0.91550 0.92571 0.92183 0.86829 0.86365 0.93132 0.92963 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.15 37.16 0.38 -2.59 16 2 C 0.10 2.13 5.27 -4.04 -0.02 2.11 16 3 N -0.43 -10.93 2.51 -118.00 -0.30 -11.22 16 4 C -0.30 -8.25 8.86 -15.04 -0.13 -8.39 16 5 H 0.09 2.53 7.79 -52.49 -0.41 2.12 16 6 C 0.04 0.96 5.05 -17.44 -0.09 0.87 16 7 N -0.87 -23.66 11.35 55.50 0.63 -23.03 16 8 Si 0.92 20.74 29.58 -169.99 -5.03 15.71 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.48 11.85 6.39 -14.90 -0.10 11.75 16 13 O -0.57 -15.71 12.09 5.12 0.06 -15.65 16 14 C -0.18 -3.79 8.45 -39.32 -0.33 -4.12 16 15 C -0.06 -1.11 9.35 -37.18 -0.35 -1.46 16 16 C -0.07 -1.34 4.46 -104.93 -0.47 -1.81 16 17 C 0.01 0.22 6.33 -39.11 -0.25 -0.02 16 18 C -0.14 -2.44 5.87 -104.68 -0.61 -3.05 16 19 C -0.10 -1.51 10.00 36.00 0.36 -1.15 16 20 C -0.08 -1.31 9.68 -39.49 -0.38 -1.70 16 21 C -0.22 -3.60 9.03 -39.49 -0.36 -3.96 16 22 C 0.13 2.33 6.71 -38.63 -0.26 2.07 16 23 O -0.32 -5.25 9.95 -18.77 -0.19 -5.44 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 H 0.04 0.76 7.63 -51.93 -0.40 0.36 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.01 6.31 -51.93 -0.33 0.68 16 29 H 0.11 2.60 5.60 -51.93 -0.29 2.31 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.12 2.16 6.15 -52.49 -0.32 1.83 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.12 2.46 7.10 -52.49 -0.37 2.09 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 39 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 40 H 0.05 0.58 7.67 -51.93 -0.40 0.19 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -32.04 337.58 -7.10 -39.15 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.76 Total: 5.49 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.62 Total: -10.10 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.33 Total: -34.25 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.12 Total: -21.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.04 -7.10 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491235446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.445 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds