Wall clock time and date at job start Tue Mar 31 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46863 * 2 1 4 4 C 1.36750 * 120.00300 * 95.93854 * 3 2 1 5 5 H 1.08000 * 120.00261 * 221.14121 * 4 3 2 6 6 C 1.39100 * 119.99664 * 41.13724 * 4 3 2 7 7 N 1.31341 * 120.00122 * 14.03197 * 6 4 3 8 8 Si 1.86804 * 119.99835 * 194.03612 * 6 4 3 9 9 H 1.48503 * 109.47089 * 59.99661 * 8 6 4 10 10 H 1.48499 * 109.46872 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46752 * 299.99748 * 8 6 4 12 12 C 1.34780 * 120.00407 * 275.66149 * 3 2 1 13 13 O 1.21777 * 120.00387 * 180.02562 * 12 3 2 14 14 C 1.41793 * 119.99574 * 359.97438 * 12 3 2 15 15 C 1.35154 * 119.99811 * 171.90810 * 14 12 3 16 16 C 1.46890 * 120.00215 * 348.40370 * 15 14 12 17 17 C 1.39959 * 120.21142 * 316.02556 * 16 15 14 18 18 C 1.37753 * 119.87555 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.83978 * 179.97438 * 18 17 16 20 20 C 1.38580 * 120.31866 * 359.97438 * 18 17 16 21 21 C 1.38136 * 120.44454 * 359.97438 * 20 18 17 22 22 C 1.38595 * 120.11177 * 359.74802 * 21 20 18 23 23 O 1.35690 * 120.16089 * 180.24880 * 22 21 20 24 24 C 1.42902 * 116.99974 * 0.25448 * 23 22 21 25 25 H 1.09000 * 109.47135 * 60.00254 * 1 2 3 26 26 H 1.08998 * 109.47042 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47224 * 299.99675 * 1 2 3 28 28 H 1.09002 * 109.47469 * 240.00448 * 2 1 3 29 29 H 1.08998 * 109.47585 * 119.99999 * 2 1 3 30 30 H 0.96997 * 119.99932 * 180.02562 * 7 6 4 31 31 H 1.07994 * 120.00212 * 351.90860 * 14 12 3 32 32 H 1.07998 * 120.00029 * 168.40203 * 15 14 12 33 33 H 1.07996 * 120.06626 * 359.97438 * 17 16 15 34 34 H 1.09002 * 109.47602 * 89.99719 * 19 18 17 35 35 H 1.08998 * 109.47241 * 209.99871 * 19 18 17 36 36 H 1.09000 * 109.47423 * 329.99701 * 19 18 17 37 37 H 1.08000 * 119.77577 * 180.02562 * 20 18 17 38 38 H 1.07998 * 119.94543 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.47244 * 299.99830 * 24 23 22 40 40 H 1.09000 * 109.47201 * 60.00402 * 24 23 22 41 41 H 1.09004 * 109.46757 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 1.9851 1.1779 5 1 2.0892 3.0148 1.3564 6 6 3.0619 1.2731 2.1462 7 7 3.6315 0.1305 1.8375 8 14 3.1921 1.9418 3.8856 9 1 1.8316 2.0892 4.4623 10 1 3.9846 1.0023 4.7190 11 1 3.8641 3.2658 3.8578 12 6 2.1343 2.0551 -1.1615 13 8 2.5407 3.2030 -1.1615 14 6 1.7843 1.4268 -2.3835 15 6 1.7433 2.1473 -3.5262 16 6 1.8080 3.6138 -3.4726 17 6 1.0543 4.3179 -2.5266 18 6 1.1206 5.6931 -2.4821 19 6 0.3083 6.4505 -1.4635 20 6 1.9308 6.3835 -3.3694 21 6 2.6811 5.7018 -4.3078 22 6 2.6325 4.3179 -4.3649 23 8 3.3730 3.6471 -5.2830 24 6 4.1867 4.4307 -6.1582 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.1195 -0.3662 2.5128 31 1 1.5506 0.3726 -2.4012 32 1 1.6629 1.6449 -4.4788 33 1 0.4219 3.7841 -1.8327 34 1 0.8926 6.5739 -0.5516 35 1 0.0470 7.4304 -1.8629 36 1 -0.6023 5.8950 -1.2391 37 1 1.9765 7.4617 -3.3265 38 1 3.3094 6.2480 -4.9958 39 1 3.5550 5.1095 -6.7310 40 1 4.9010 5.0075 -5.5708 41 1 4.7252 3.7724 -6.8400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491235446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:09 Heat of formation + Delta-G solvation = -31.040198 kcal Electronic energy + Delta-G solvation = -23428.290309 eV Core-core repulsion = 20081.099823 eV Total energy + Delta-G solvation = -3347.190486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30697 -40.35588 -38.48272 -36.94638 -34.80339 -33.96801 -32.54894 -31.12284 -30.83030 -28.62471 -27.36814 -26.69461 -24.87841 -23.84921 -22.54018 -21.86155 -19.56414 -19.03219 -18.53045 -18.01149 -17.19160 -16.81354 -16.55669 -16.17263 -15.69299 -15.28485 -15.16026 -14.79418 -14.63257 -14.46968 -14.38721 -14.25114 -13.50932 -13.48261 -13.41327 -13.05762 -12.91753 -12.84960 -12.65927 -12.61235 -12.35865 -12.26902 -12.10319 -11.87484 -11.70865 -11.58719 -10.88804 -10.70750 -10.21392 -9.38439 -9.00965 -8.68856 -8.29580 -6.05938 -0.08027 0.64929 1.04040 1.39306 1.42587 1.49819 2.29516 2.43885 2.67679 2.95889 3.18633 3.27583 3.85430 3.97437 4.06655 4.26062 4.27564 4.33508 4.42698 4.46499 4.54241 4.58792 4.66035 4.71836 4.75625 4.80446 4.83597 4.86379 5.05096 5.11642 5.22187 5.25072 5.29658 5.32907 5.45238 5.51290 5.60907 5.67143 5.85334 5.99191 6.27888 6.56873 6.65364 7.25693 7.52808 8.19979 8.70997 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.005129 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.998359 B = 5457.958659 C = 5942.893786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 N -0.446 5.446 4 C -0.329 4.329 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.894 5.894 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.471 3.529 13 O -0.607 6.607 14 C -0.213 4.213 15 C -0.028 4.028 16 C -0.107 4.107 17 C -0.008 4.008 18 C -0.156 4.156 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.222 4.222 22 C 0.121 3.879 23 O -0.333 6.333 24 C 0.020 3.980 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.273 0.727 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 5.724 -12.366 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 N -0.164 5.164 4 C -0.458 4.458 5 H 0.080 0.920 6 C -0.202 4.202 7 N -0.532 5.532 8 Si 0.806 3.194 9 H -0.187 1.187 10 H -0.197 1.197 11 H -0.205 1.205 12 C 0.265 3.735 13 O -0.495 6.495 14 C -0.234 4.234 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.027 4.027 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.096 4.096 21 C -0.240 4.240 22 C 0.075 3.925 23 O -0.247 6.247 24 C -0.074 4.074 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.172 0.828 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.556 5.873 -12.244 14.324 hybrid contribution 0.541 0.066 1.125 1.250 sum -4.015 5.939 -11.120 13.230 Atomic orbital electron populations 1.22095 0.95289 1.02358 1.01133 1.21629 0.93918 0.83966 1.03098 1.43742 1.54922 1.12864 1.04887 1.19294 1.34997 0.97976 0.93503 0.92008 1.26216 0.93609 0.96539 1.03870 1.69899 1.31800 1.15907 1.35592 0.85176 0.78872 0.77899 0.77469 1.18653 1.19655 1.20520 1.17892 0.82810 0.87645 0.85201 1.90678 1.52177 1.19433 1.87244 1.22341 1.06221 1.01611 0.93210 1.22337 0.92858 0.91780 0.97914 1.18379 1.00950 0.93587 0.97882 1.20729 0.96078 0.93737 0.92136 1.19945 1.02074 0.93411 1.00162 1.20638 0.98201 1.00115 0.96558 1.21106 0.94339 1.00583 0.93571 1.21289 1.05998 0.92243 1.04465 1.19176 0.92253 0.91137 0.89892 1.85955 1.56523 1.37206 1.45053 1.23324 0.93915 0.97664 0.92542 0.92942 0.89778 0.94103 0.91982 0.89783 0.91771 0.83903 0.82810 0.88713 0.92936 0.89284 0.92184 0.83346 0.82967 0.90999 0.92704 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.15 71.98 0.73 -4.69 16 2 C 0.10 4.34 5.27 86.38 0.46 4.80 16 3 N -0.45 -23.67 2.51 -645.42 -1.62 -25.29 16 4 C -0.33 -19.05 8.86 84.13 0.75 -18.30 16 5 H 0.06 3.79 7.79 -2.91 -0.02 3.77 16 6 C 0.00 -0.02 5.05 84.97 0.43 0.41 16 7 N -0.89 -49.62 11.35 21.69 0.25 -49.38 16 8 Si 0.98 43.48 29.58 68.60 2.03 45.51 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.47 24.37 6.39 85.12 0.54 24.91 16 13 O -0.61 -35.00 12.09 -4.59 -0.06 -35.06 16 14 C -0.21 -8.81 8.45 22.44 0.19 -8.62 16 15 C -0.03 -1.05 9.35 23.83 0.22 -0.83 16 16 C -0.11 -4.26 4.46 -20.06 -0.09 -4.35 16 17 C -0.01 -0.33 6.33 22.57 0.14 -0.19 16 18 C -0.16 -5.50 5.87 -19.90 -0.12 -5.62 16 19 C -0.10 -2.90 10.00 71.23 0.71 -2.19 16 20 C -0.08 -2.37 9.68 22.33 0.22 -2.15 16 21 C -0.22 -6.67 9.03 22.33 0.20 -6.46 16 22 C 0.12 4.26 6.71 22.89 0.15 4.41 16 23 O -0.33 -10.40 9.95 -90.09 -0.90 -11.29 16 24 C 0.02 0.39 9.81 113.37 1.11 1.50 16 25 H 0.05 1.78 7.63 -2.39 -0.02 1.76 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 2.54 6.31 -2.39 -0.02 2.53 16 29 H 0.08 4.17 5.60 -2.39 -0.01 4.15 16 30 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.14 5.06 6.15 -2.91 -0.02 5.04 16 32 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 33 H 0.09 4.20 7.10 -2.91 -0.02 4.17 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 36 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.15 3.43 6.30 -2.91 -0.02 3.41 16 39 H 0.07 1.12 7.65 -2.39 -0.02 1.11 16 40 H 0.05 1.06 7.67 -2.39 -0.02 1.04 16 41 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -72.90 337.58 6.38 -66.52 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 1.02 Total: 26.36 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 5.65 Total: -17.37 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.37 Total: -74.66 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.95 Total: -46.35 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -72.90 6.38 -66.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491235446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.480 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds