Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46846 * 2 1 4 4 C 1.36745 * 120.00135 * 263.48442 * 3 2 1 5 5 H 1.08000 * 120.00163 * 141.56064 * 4 3 2 6 6 C 1.39070 * 119.99824 * 321.56139 * 4 3 2 7 7 N 1.31357 * 120.00021 * 350.09247 * 6 4 3 8 8 Si 1.86805 * 119.99808 * 170.09342 * 6 4 3 9 9 H 1.48501 * 109.46781 * 90.00154 * 8 6 4 10 10 H 1.48498 * 109.46974 * 209.99751 * 8 6 4 11 11 H 1.48496 * 109.47357 * 330.00194 * 8 6 4 12 12 C 1.34780 * 120.00274 * 83.48784 * 3 2 1 13 13 O 1.21843 * 120.00592 * 180.02562 * 12 3 2 14 14 C 1.41345 * 119.99448 * 359.97438 * 12 3 2 15 15 C 1.35786 * 119.99639 * 175.22868 * 14 12 3 16 16 C 1.41515 * 120.00104 * 347.86474 * 15 14 12 17 17 C 1.38037 * 126.11480 * 133.09011 * 16 15 14 18 18 C 1.40284 * 106.52924 * 179.97438 * 17 16 15 19 19 C 1.35175 * 107.21108 * 359.97438 * 18 17 16 20 20 C 1.50706 * 125.47575 * 180.02562 * 19 18 17 21 21 H 1.08998 * 115.55241 * 334.38745 * 20 19 18 22 22 C 1.52997 * 117.49615 * 188.71704 * 20 19 18 23 23 C 1.53000 * 117.49754 * 120.06027 * 20 19 18 24 24 H 1.09002 * 117.49628 * 214.98258 * 23 20 19 25 25 C 1.52997 * 117.50020 * 359.97438 * 23 20 19 26 26 O 1.34039 * 109.04729 * 0.02562 * 19 18 17 27 27 H 1.09004 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47186 * 299.99488 * 1 2 3 29 29 H 1.08992 * 109.47254 * 59.99880 * 1 2 3 30 30 H 1.09001 * 109.47231 * 240.00025 * 2 1 3 31 31 H 1.09004 * 109.47312 * 119.99674 * 2 1 3 32 32 H 0.97003 * 119.99446 * 179.97438 * 7 6 4 33 33 H 1.07994 * 120.00258 * 355.23723 * 14 12 3 34 34 H 1.08002 * 120.00087 * 167.85897 * 15 14 12 35 35 H 1.08007 * 126.73404 * 0.02655 * 17 16 15 36 36 H 1.08004 * 126.39192 * 180.02562 * 18 17 16 37 37 H 1.08996 * 117.50478 * 0.02562 * 22 20 19 38 38 H 1.09005 * 117.49492 * 145.02295 * 22 20 19 39 39 H 1.08993 * 109.47269 * 59.99822 * 25 23 20 40 40 H 1.09004 * 109.47337 * 180.02562 * 25 23 20 41 41 H 1.08999 * 109.47038 * 300.00075 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3728 1.9811 -1.1766 5 1 2.1404 3.0226 -1.3433 6 6 3.0327 1.2501 -2.1585 7 7 3.4880 0.0480 -1.8879 8 14 3.2715 1.9777 -3.8624 9 1 4.5546 2.7241 -3.9064 10 1 3.2998 0.8850 -4.8677 11 1 2.1503 2.9022 -4.1675 12 6 2.1181 2.0608 1.1597 13 8 2.5237 3.2097 1.1597 14 6 1.7511 1.4409 2.3758 15 6 1.9423 2.0896 3.5532 16 6 2.7339 3.2619 3.5948 17 6 2.4046 4.4440 4.2269 18 6 3.4750 5.3244 4.0097 19 6 4.3941 4.6622 3.2722 20 6 5.7110 5.2262 2.8040 21 1 5.7475 6.3105 2.6994 22 6 6.5229 4.3929 1.8104 23 6 6.9865 4.5174 3.2639 24 1 7.8623 5.1355 3.4617 25 6 6.8276 3.2908 4.1644 26 8 3.9461 3.4235 3.0242 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9479 -0.4619 -2.5730 33 1 1.3188 0.4512 2.3685 34 1 1.4901 1.7110 4.4580 35 1 1.5006 4.6503 4.7808 36 1 3.5509 6.3411 4.3661 37 1 6.1046 3.4371 1.4950 38 1 7.0940 4.9292 1.0524 39 1 6.2474 2.5297 3.6427 40 1 7.8113 2.8919 4.4120 41 1 6.3109 3.5770 5.0805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491292195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = 34.394787 kcal Electronic energy + Delta-G solvation = -23586.387476 eV Core-core repulsion = 20242.034464 eV Total energy + Delta-G solvation = -3344.353012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81357 -38.74498 -37.42097 -35.16584 -33.15968 -32.24668 -31.94336 -29.44411 -28.90412 -27.82813 -25.48335 -23.54173 -22.26590 -21.46069 -21.10164 -20.41991 -19.29233 -18.16318 -17.07123 -16.45992 -15.85324 -15.40695 -14.95719 -14.88697 -14.32698 -13.78924 -13.43849 -13.15866 -12.95318 -12.84142 -12.67173 -12.40009 -12.31897 -12.12095 -11.92123 -11.67773 -11.40963 -11.40495 -11.22456 -11.08566 -10.90694 -10.47942 -10.33725 -10.26284 -10.08654 -9.79720 -9.29370 -9.00576 -8.90687 -8.42913 -7.45195 -7.10326 -6.31801 -3.98363 1.34389 2.60640 3.16937 3.23302 3.27679 3.28832 3.65238 4.13251 4.16255 4.51893 4.81927 4.93009 4.98208 5.12728 5.14106 5.37995 5.45523 5.58628 5.63345 5.72534 5.90921 5.92040 5.96186 6.03210 6.07048 6.11417 6.22804 6.28186 6.34299 6.38222 6.43287 6.51864 6.54053 6.66552 6.72292 6.91056 6.95400 7.20091 7.33482 7.57843 7.91856 8.26888 8.54997 9.20105 9.39509 10.05215 10.68018 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.005946 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.800471 B = 4708.196645 C = 5829.070619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 N -0.427 5.427 4 C -0.290 4.290 5 H 0.090 0.910 6 C 0.033 3.967 7 N -0.874 5.874 8 Si 0.924 3.076 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.468 3.532 13 O -0.566 6.566 14 C -0.149 4.149 15 C -0.070 4.070 16 C 0.058 3.942 17 C -0.212 4.212 18 C -0.213 4.213 19 C 0.030 3.970 20 C -0.077 4.077 21 H 0.126 0.874 22 C -0.161 4.161 23 C -0.146 4.146 24 H 0.107 0.893 25 C -0.123 4.123 26 O -0.128 6.128 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.269 0.731 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 2.428 9.754 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.037 4.037 3 N -0.145 5.145 4 C -0.419 4.419 5 H 0.108 0.892 6 C -0.171 4.171 7 N -0.513 5.513 8 Si 0.750 3.250 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.260 3.740 13 O -0.451 6.451 14 C -0.171 4.171 15 C -0.091 4.091 16 C 0.007 3.993 17 C -0.232 4.232 18 C -0.233 4.233 19 C -0.023 4.023 20 C -0.095 4.095 21 H 0.144 0.856 22 C -0.198 4.198 23 C -0.164 4.164 24 H 0.125 0.875 25 C -0.180 4.180 26 O -0.022 6.022 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.763 2.587 9.405 9.912 hybrid contribution -0.208 0.277 -0.859 0.927 sum 1.555 2.864 8.545 9.145 Atomic orbital electron populations 1.22251 0.98314 1.00293 1.01452 1.21803 0.91495 0.85679 1.04709 1.43475 1.54087 1.11546 1.05416 1.19470 1.33916 0.97094 0.91390 0.89223 1.25468 0.94957 0.96070 1.00560 1.69681 1.35826 1.11409 1.34371 0.85967 0.79127 0.78587 0.81276 1.20196 1.20774 1.19400 1.17021 0.84373 0.88338 0.84310 1.90714 1.50125 1.18058 1.86218 1.22787 1.00498 0.99666 0.94106 1.20307 0.97796 0.92995 0.97990 1.19385 0.86664 0.96434 0.96807 1.21851 1.00697 0.93408 1.07234 1.21071 0.95307 1.00787 1.06104 1.21135 0.96150 0.83945 1.01021 1.20508 0.85935 0.97678 1.05423 0.85588 1.23185 1.01972 1.02753 0.91843 1.22480 0.96637 1.00103 0.97224 0.87514 1.21348 1.01393 0.96258 0.98963 1.84145 1.29812 1.30189 1.58026 0.93106 0.93953 0.92581 0.85814 0.93544 0.92060 0.85647 0.84148 0.84322 0.84589 0.87550 0.88433 0.91867 0.92402 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.00 37.16 0.37 -2.64 16 2 C 0.09 1.91 5.24 -4.04 -0.02 1.89 16 3 N -0.43 -10.99 2.54 -118.14 -0.30 -11.29 16 4 C -0.29 -8.08 8.94 -15.05 -0.13 -8.22 16 5 H 0.09 2.63 7.72 -52.49 -0.41 2.22 16 6 C 0.03 0.86 5.17 -17.45 -0.09 0.77 16 7 N -0.87 -23.29 10.92 55.50 0.61 -22.68 16 8 Si 0.92 20.78 29.57 -169.99 -5.03 15.75 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.47 11.80 7.17 -15.08 -0.11 11.69 16 13 O -0.57 -15.99 12.79 -18.56 -0.24 -16.23 16 14 C -0.15 -2.99 8.57 -39.28 -0.34 -3.33 16 15 C -0.07 -1.25 9.94 -39.21 -0.39 -1.64 16 16 C 0.06 1.17 4.94 -38.41 -0.19 0.98 16 17 C -0.21 -3.85 10.90 -38.89 -0.42 -4.27 16 18 C -0.21 -3.78 10.76 -39.90 -0.43 -4.21 16 19 C 0.03 0.57 5.89 -35.40 -0.21 0.36 16 20 C -0.08 -1.23 6.23 -91.77 -0.57 -1.80 16 21 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 22 C -0.16 -2.61 9.81 -26.70 -0.26 -2.87 16 23 C -0.15 -2.01 6.41 -90.59 -0.58 -2.59 16 24 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 25 C -0.12 -1.70 9.15 37.16 0.34 -1.36 16 26 O -0.13 -2.79 7.56 -19.01 -0.14 -2.94 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.73 7.29 -51.93 -0.38 0.35 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.12 3.00 5.22 -51.93 -0.27 2.73 16 31 H 0.05 0.94 6.54 -51.93 -0.34 0.60 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 33 H 0.13 2.14 5.84 -52.49 -0.31 1.83 16 34 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.14 2.11 8.06 -52.48 -0.42 1.68 16 36 H 0.14 2.00 8.06 -52.48 -0.42 1.57 16 37 H 0.11 2.10 7.86 -51.93 -0.41 1.69 16 38 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.06 1.03 7.26 -51.93 -0.38 0.65 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -32.04 341.02 -8.84 -40.88 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.85 Total: 8.59 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.03 Total: -17.23 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.31 Total: -33.97 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.38 Total: -19.16 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.04 -8.84 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491292195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.275 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds