Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46846 * 2 1 4 4 C 1.36745 * 120.00135 * 263.48442 * 3 2 1 5 5 H 1.08000 * 120.00163 * 141.56064 * 4 3 2 6 6 C 1.39070 * 119.99824 * 321.56139 * 4 3 2 7 7 N 1.31357 * 120.00021 * 350.09247 * 6 4 3 8 8 Si 1.86805 * 119.99808 * 170.09342 * 6 4 3 9 9 H 1.48501 * 109.46781 * 90.00154 * 8 6 4 10 10 H 1.48498 * 109.46974 * 209.99751 * 8 6 4 11 11 H 1.48496 * 109.47357 * 330.00194 * 8 6 4 12 12 C 1.34780 * 120.00274 * 83.48784 * 3 2 1 13 13 O 1.21843 * 120.00592 * 180.02562 * 12 3 2 14 14 C 1.41345 * 119.99448 * 359.97438 * 12 3 2 15 15 C 1.35786 * 119.99639 * 175.22868 * 14 12 3 16 16 C 1.41515 * 120.00104 * 347.86474 * 15 14 12 17 17 C 1.38037 * 126.11480 * 133.09011 * 16 15 14 18 18 C 1.40284 * 106.52924 * 179.97438 * 17 16 15 19 19 C 1.35175 * 107.21108 * 359.97438 * 18 17 16 20 20 C 1.50706 * 125.47575 * 180.02562 * 19 18 17 21 21 H 1.08998 * 115.55241 * 334.38745 * 20 19 18 22 22 C 1.52997 * 117.49615 * 188.71704 * 20 19 18 23 23 C 1.53000 * 117.49754 * 120.06027 * 20 19 18 24 24 H 1.09002 * 117.49628 * 214.98258 * 23 20 19 25 25 C 1.52997 * 117.50020 * 359.97438 * 23 20 19 26 26 O 1.34039 * 109.04729 * 0.02562 * 19 18 17 27 27 H 1.09004 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47186 * 299.99488 * 1 2 3 29 29 H 1.08992 * 109.47254 * 59.99880 * 1 2 3 30 30 H 1.09001 * 109.47231 * 240.00025 * 2 1 3 31 31 H 1.09004 * 109.47312 * 119.99674 * 2 1 3 32 32 H 0.97003 * 119.99446 * 179.97438 * 7 6 4 33 33 H 1.07994 * 120.00258 * 355.23723 * 14 12 3 34 34 H 1.08002 * 120.00087 * 167.85897 * 15 14 12 35 35 H 1.08007 * 126.73404 * 0.02655 * 17 16 15 36 36 H 1.08004 * 126.39192 * 180.02562 * 18 17 16 37 37 H 1.08996 * 117.50478 * 0.02562 * 22 20 19 38 38 H 1.09005 * 117.49492 * 145.02295 * 22 20 19 39 39 H 1.08993 * 109.47269 * 59.99822 * 25 23 20 40 40 H 1.09004 * 109.47337 * 180.02562 * 25 23 20 41 41 H 1.08999 * 109.47038 * 300.00075 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3728 1.9811 -1.1766 5 1 2.1404 3.0226 -1.3433 6 6 3.0327 1.2501 -2.1585 7 7 3.4880 0.0480 -1.8879 8 14 3.2715 1.9777 -3.8624 9 1 4.5546 2.7241 -3.9064 10 1 3.2998 0.8850 -4.8677 11 1 2.1503 2.9022 -4.1675 12 6 2.1181 2.0608 1.1597 13 8 2.5237 3.2097 1.1597 14 6 1.7511 1.4409 2.3758 15 6 1.9423 2.0896 3.5532 16 6 2.7339 3.2619 3.5948 17 6 2.4046 4.4440 4.2269 18 6 3.4750 5.3244 4.0097 19 6 4.3941 4.6622 3.2722 20 6 5.7110 5.2262 2.8040 21 1 5.7475 6.3105 2.6994 22 6 6.5229 4.3929 1.8104 23 6 6.9865 4.5174 3.2639 24 1 7.8623 5.1355 3.4617 25 6 6.8276 3.2908 4.1644 26 8 3.9461 3.4235 3.0242 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9479 -0.4619 -2.5730 33 1 1.3188 0.4512 2.3685 34 1 1.4901 1.7110 4.4580 35 1 1.5006 4.6503 4.7808 36 1 3.5509 6.3411 4.3661 37 1 6.1046 3.4371 1.4950 38 1 7.0940 4.9292 1.0524 39 1 6.2474 2.5297 3.6427 40 1 7.8113 2.8919 4.4120 41 1 6.3109 3.5770 5.0805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491292195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = 17.742213 kcal Electronic energy + Delta-G solvation = -23587.109586 eV Core-core repulsion = 20242.034464 eV Total energy + Delta-G solvation = -3345.075122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.26710 -40.58038 -38.65980 -37.03022 -34.78315 -33.95678 -33.61069 -31.17477 -30.23599 -29.17848 -27.30990 -25.13781 -23.89725 -22.93135 -22.55078 -21.76604 -20.65919 -19.82866 -18.88391 -18.26858 -17.23270 -17.06926 -16.59526 -16.39747 -15.93247 -15.55099 -15.14500 -14.70410 -14.47199 -14.15031 -14.01101 -13.96369 -13.62758 -13.58742 -13.51036 -13.34677 -13.03436 -12.87728 -12.72159 -12.62415 -12.40919 -12.34662 -12.08753 -11.84239 -11.50094 -11.01694 -10.94108 -10.76326 -10.37877 -10.36094 -9.40611 -8.58682 -8.30846 -6.07985 -0.15985 1.16395 1.35741 1.37752 1.48549 1.84195 2.26354 2.28800 2.65802 2.91941 3.16812 3.22602 3.56289 3.75829 3.88327 4.03476 4.17513 4.26926 4.31605 4.38775 4.41350 4.59299 4.65620 4.72105 4.81381 4.81956 4.83684 4.92169 4.95418 5.02722 5.04335 5.08321 5.18973 5.26554 5.32079 5.36010 5.41325 5.52996 5.66089 5.84137 6.23001 6.48335 6.59879 7.19833 7.48254 8.12220 8.67183 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.005946 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.800471 B = 4708.196645 C = 5829.070619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 N -0.446 5.446 4 C -0.326 4.326 5 H 0.058 0.942 6 C -0.001 4.001 7 N -0.893 5.893 8 Si 0.983 3.017 9 H -0.280 1.280 10 H -0.263 1.263 11 H -0.269 1.269 12 C 0.461 3.539 13 O -0.610 6.610 14 C -0.187 4.187 15 C -0.030 4.030 16 C 0.008 3.992 17 C -0.202 4.202 18 C -0.220 4.220 19 C 0.011 3.989 20 C -0.092 4.092 21 H 0.154 0.846 22 C -0.183 4.183 23 C -0.115 4.115 24 H 0.148 0.852 25 C -0.123 4.123 26 O -0.160 6.160 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.274 0.726 33 H 0.156 0.844 34 H 0.196 0.804 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.027 0.973 40 H 0.083 0.917 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 2.915 11.666 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 N -0.164 5.164 4 C -0.455 4.455 5 H 0.076 0.924 6 C -0.202 4.202 7 N -0.531 5.531 8 Si 0.806 3.194 9 H -0.206 1.206 10 H -0.188 1.188 11 H -0.194 1.194 12 C 0.254 3.746 13 O -0.498 6.498 14 C -0.208 4.208 15 C -0.051 4.051 16 C -0.042 4.042 17 C -0.221 4.221 18 C -0.239 4.239 19 C -0.041 4.041 20 C -0.109 4.109 21 H 0.171 0.829 22 C -0.220 4.220 23 C -0.133 4.133 24 H 0.166 0.834 25 C -0.180 4.180 26 O -0.055 6.055 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.173 0.827 34 H 0.212 0.788 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.772 3.035 11.328 11.860 hybrid contribution -0.165 0.234 -1.276 1.307 sum 1.607 3.268 10.052 10.692 Atomic orbital electron populations 1.22121 0.95373 1.02425 1.01103 1.21847 0.93896 0.83732 1.04124 1.43683 1.54963 1.12782 1.05021 1.19329 1.36290 0.96379 0.93497 0.92401 1.26147 0.94155 0.96409 1.03503 1.69777 1.35907 1.12012 1.35430 0.85102 0.78522 0.78284 0.77450 1.20600 1.18752 1.19362 1.17839 0.83023 0.87941 0.85804 1.90664 1.51858 1.20059 1.87244 1.22671 1.04098 1.01557 0.92435 1.21056 0.94270 0.90671 0.99075 1.20079 0.87306 0.98446 0.98357 1.22330 1.01477 0.92514 1.05788 1.21524 0.94658 1.02083 1.05645 1.21921 0.97698 0.83426 1.01071 1.20865 0.85643 0.98929 1.05503 0.82854 1.23080 1.03618 1.01118 0.94170 1.22653 0.96594 0.99620 0.94434 0.83444 1.21360 1.02319 0.95636 0.98651 1.84135 1.30841 1.31725 1.58844 0.89601 0.92748 0.94435 0.88217 0.92087 0.91628 0.82656 0.78758 0.81240 0.81484 0.92478 0.86503 0.95410 0.89780 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 10.00 71.98 0.72 -4.73 16 2 C 0.09 3.89 5.24 86.38 0.45 4.35 16 3 N -0.45 -23.98 2.54 -645.85 -1.64 -25.62 16 4 C -0.33 -19.24 8.94 84.13 0.75 -18.49 16 5 H 0.06 3.67 7.72 -2.91 -0.02 3.65 16 6 C 0.00 -0.04 5.17 84.96 0.44 0.40 16 7 N -0.89 -49.03 10.92 21.68 0.24 -48.80 16 8 Si 0.98 43.96 29.57 68.60 2.03 45.99 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 C 0.46 24.14 7.17 85.01 0.61 24.75 16 13 O -0.61 -36.33 12.79 17.78 0.23 -36.10 16 14 C -0.19 -7.43 8.57 22.47 0.19 -7.24 16 15 C -0.03 -1.04 9.94 22.51 0.22 -0.81 16 16 C 0.01 0.33 4.94 23.03 0.11 0.44 16 17 C -0.20 -6.94 10.90 22.72 0.25 -6.69 16 18 C -0.22 -7.45 10.76 22.06 0.24 -7.21 16 19 C 0.01 0.41 5.89 24.98 0.15 0.56 16 20 C -0.09 -2.85 6.23 -11.54 -0.07 -2.93 16 21 H 0.15 3.82 8.14 -2.39 -0.02 3.80 16 22 C -0.18 -6.10 9.81 30.62 0.30 -5.80 16 23 C -0.12 -2.98 6.41 -10.77 -0.07 -3.05 16 24 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 25 C -0.12 -3.31 9.15 71.98 0.66 -2.65 16 26 O -0.16 -7.22 7.56 16.18 0.12 -7.10 16 27 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.05 1.80 7.29 -2.38 -0.02 1.79 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 4.98 5.22 -2.39 -0.01 4.96 16 31 H 0.06 2.48 6.54 -2.38 -0.02 2.46 16 32 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.16 5.06 5.84 -2.91 -0.02 5.04 16 34 H 0.20 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.17 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.06 2.47 7.86 -2.39 -0.02 2.45 16 38 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 39 H 0.03 0.93 7.26 -2.39 -0.02 0.91 16 40 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.22 341.02 6.95 -69.27 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 1.02 Total: 31.48 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.95 Total: -29.12 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.41 Total: -74.42 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: 0.35 Total: -43.20 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -76.22 6.95 -69.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491292195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.015 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds