Wall clock time and date at job start Tue Mar 31 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35737 * 117.00280 * 2 1 4 4 C 1.39019 * 119.88931 * 179.97438 * 3 2 1 5 5 C 1.37658 * 120.11281 * 180.25391 * 4 3 2 6 6 C 1.39969 * 119.88645 * 359.50064 * 5 4 3 7 7 C 1.47004 * 120.11310 * 180.23015 * 6 5 4 8 8 C 1.34975 * 120.00222 * 43.73387 * 7 6 5 9 9 C 1.46256 * 119.99670 * 10.41190 * 8 7 6 10 10 O 1.21717 * 120.00176 * 7.37975 * 9 8 7 11 11 N 1.34778 * 120.00132 * 187.37513 * 9 8 7 12 12 C 1.46496 * 120.00577 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47457 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47322 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47291 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47053 * 89.99829 * 19 17 15 21 21 H 1.48499 * 109.47212 * 209.99496 * 19 17 15 22 22 H 1.48498 * 109.47272 * 329.99960 * 19 17 15 23 23 C 1.39975 * 119.77611 * 0.47708 * 6 5 4 24 24 C 1.37663 * 119.88039 * 359.77588 * 23 6 5 25 25 H 1.09004 * 109.47038 * 59.99807 * 1 2 3 26 26 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47409 * 299.99887 * 1 2 3 28 28 H 1.07999 * 119.94141 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.05871 * 179.74072 * 5 4 3 30 30 H 1.08007 * 120.00057 * 223.72959 * 7 6 5 31 31 H 1.07999 * 120.00416 * 190.41066 * 8 7 6 32 32 H 0.97004 * 119.99634 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.46876 * 300.00373 * 12 11 9 34 34 H 1.08998 * 109.47314 * 59.99730 * 12 11 9 35 35 H 1.09001 * 109.46605 * 299.99720 * 13 12 11 36 36 H 1.08998 * 109.47451 * 59.99358 * 13 12 11 37 37 H 1.09007 * 109.46827 * 299.99804 * 14 13 12 38 38 H 1.08998 * 109.47500 * 59.99244 * 14 13 12 39 39 H 0.97006 * 119.99817 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.06050 * 179.79937 * 23 6 5 41 41 H 1.07999 * 119.93805 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4337 1.2794 0.0005 5 6 4.0635 2.5034 0.0058 6 6 3.3035 3.6788 0.0001 7 6 3.9709 4.9886 0.0006 8 6 5.0335 5.2050 -0.8031 9 6 5.3821 4.2272 -1.8334 10 8 4.6409 3.2880 -2.0569 11 7 6.5241 4.3662 -2.5356 12 6 6.8731 3.3873 -3.5680 13 6 8.2079 3.7745 -4.2078 14 6 8.5720 2.7524 -5.2865 15 6 9.8870 3.1335 -5.9162 16 1 10.4104 4.0166 -5.5809 17 6 10.4213 2.3553 -6.9211 18 7 9.7836 1.2801 -7.3298 19 14 12.0510 2.8280 -7.7022 20 1 13.1626 2.1873 -6.9545 21 1 12.0748 2.3688 -9.1142 22 1 12.2111 4.3037 -7.6588 23 6 1.9058 3.6029 -0.0009 24 6 1.2857 2.3738 -0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.0192 0.3719 0.0014 29 1 5.1422 2.5568 0.0105 30 1 3.6109 5.7779 0.6440 31 1 5.6263 6.1000 -0.6854 32 1 7.1150 5.1146 -2.3573 33 1 6.9600 2.3988 -3.1168 34 1 6.0951 3.3711 -4.3312 35 1 8.1212 4.7630 -4.6589 36 1 8.9857 3.7905 -3.4444 37 1 8.6584 1.7637 -4.8357 38 1 7.7941 2.7369 -6.0498 39 1 10.1597 0.7324 -8.0366 40 1 1.3149 4.5069 -0.0021 41 1 0.2074 2.3142 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491491623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:32 Heat of formation + Delta-G solvation = -36.692015 kcal Electronic energy + Delta-G solvation = -21603.277561 eV Core-core repulsion = 18255.841993 eV Total energy + Delta-G solvation = -3347.435567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31441 -39.47684 -37.49257 -35.38373 -33.46060 -33.28360 -31.23378 -31.14998 -29.22675 -27.54859 -26.69258 -24.05218 -22.66226 -22.58363 -21.20021 -20.61191 -19.13173 -18.29008 -17.16096 -16.48674 -16.19822 -15.86177 -15.55577 -15.29922 -14.82691 -14.48682 -14.43957 -13.90471 -13.73479 -13.69656 -13.31209 -13.02583 -12.63636 -12.26905 -12.09174 -11.83650 -11.73501 -11.64249 -11.27087 -10.90313 -10.89813 -10.71383 -10.58744 -9.85770 -9.84820 -9.70104 -9.38205 -9.11470 -8.92246 -8.54478 -8.36709 -7.77332 -6.01290 -4.04446 0.72239 1.46139 1.87149 3.16886 3.31062 3.37345 3.39988 3.45909 3.55291 3.84447 4.44725 4.64475 4.72582 4.83123 4.87101 4.93279 4.97741 5.22746 5.24381 5.30618 5.34411 5.52285 5.61587 5.72466 5.80013 5.91286 5.97651 6.13767 6.18669 6.28309 6.38907 6.52948 6.61586 6.62302 6.74201 6.87197 7.02129 7.33491 7.64246 7.76991 7.79401 7.97573 8.38284 8.48808 9.02322 9.59714 11.10002 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.002644 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.447119 B =10588.844520 C =11589.698248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.138 3.862 4 C -0.162 4.162 5 C 0.008 3.992 6 C -0.111 4.111 7 C -0.022 4.022 8 C -0.214 4.214 9 C 0.530 3.470 10 O -0.532 6.532 11 N -0.721 5.721 12 C 0.117 3.883 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.060 4.060 24 C -0.225 4.225 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.122 0.878 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.218 5.750 18.777 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.093 3.907 4 C -0.180 4.180 5 C -0.010 4.010 6 C -0.111 4.111 7 C -0.042 4.042 8 C -0.235 4.235 9 C 0.318 3.682 10 O -0.411 6.411 11 N -0.371 5.371 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.079 4.079 24 C -0.244 4.244 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.636 4.718 18.446 25.953 hybrid contribution 1.007 0.790 -0.629 1.426 sum -16.629 5.508 17.818 24.987 Atomic orbital electron populations 1.23032 0.78633 1.03750 1.01274 1.86033 1.21232 1.27397 1.88495 1.19173 0.92314 0.83888 0.95360 1.20238 0.91164 0.98669 1.07978 1.20867 0.99065 0.90545 0.90557 1.18743 0.93094 0.92855 1.06410 1.22275 0.92353 0.94681 0.94851 1.23051 1.00535 1.01370 0.98554 1.18458 0.81452 0.85735 0.82565 1.90891 1.49820 1.32511 1.67876 1.46217 1.22557 1.29719 1.38560 1.21620 0.98224 0.91487 0.89246 1.21883 0.93283 1.01268 0.99435 1.19027 0.96521 0.93487 0.92353 1.21206 1.05688 1.10206 1.18965 0.92655 1.25036 0.97557 0.95050 0.96853 1.69971 1.38740 1.15330 1.29239 0.86580 0.84030 0.78718 0.78576 1.20649 1.21205 1.19902 1.20886 0.93242 0.96866 0.96865 1.20963 0.99544 0.92307 1.11595 0.92651 0.88400 0.92785 0.85413 0.86134 0.85000 0.85104 0.76882 0.91798 0.91836 0.92789 0.92758 0.96300 0.96307 0.92924 0.86047 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.92 10.48 -18.92 -0.20 -4.12 16 3 C 0.14 1.82 6.70 -39.00 -0.26 1.56 16 4 C -0.16 -2.27 9.97 -39.50 -0.39 -2.66 16 5 C 0.01 0.11 6.57 -39.15 -0.26 -0.15 16 6 C -0.11 -1.37 4.55 -105.05 -0.48 -1.85 16 7 C -0.02 -0.22 9.80 -37.19 -0.36 -0.58 16 8 C -0.21 -2.26 9.92 -37.52 -0.37 -2.63 16 9 C 0.53 7.72 6.76 -13.04 -0.09 7.63 16 10 O -0.53 -9.58 12.12 5.17 0.06 -9.52 16 11 N -0.72 -10.27 5.55 -61.76 -0.34 -10.62 16 12 C 0.12 2.08 5.67 -4.05 -0.02 2.05 16 13 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.06 -0.68 9.79 -39.14 -0.38 -1.06 16 24 C -0.23 -2.58 9.01 -39.50 -0.36 -2.94 16 25 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 28 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.12 1.66 6.99 -52.48 -0.37 1.29 16 30 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.40 4.53 8.45 -40.82 -0.34 4.18 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.10 6.27 -52.49 -0.33 0.77 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -33.91 347.95 -8.22 -42.14 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.03 Total: 1.51 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.68 Total: -14.93 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.39 Total: -36.90 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.14 Total: -13.64 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.91 -8.22 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491491623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.446 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds