Wall clock time and date at job start Tue Mar 31 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35737 * 117.00280 * 2 1 4 4 C 1.39019 * 119.88931 * 179.97438 * 3 2 1 5 5 C 1.37658 * 120.11281 * 180.25391 * 4 3 2 6 6 C 1.39969 * 119.88645 * 359.50064 * 5 4 3 7 7 C 1.47004 * 120.11310 * 180.23015 * 6 5 4 8 8 C 1.34975 * 120.00222 * 43.73387 * 7 6 5 9 9 C 1.46256 * 119.99670 * 10.41190 * 8 7 6 10 10 O 1.21717 * 120.00176 * 7.37975 * 9 8 7 11 11 N 1.34778 * 120.00132 * 187.37513 * 9 8 7 12 12 C 1.46496 * 120.00577 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47457 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47322 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47291 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47053 * 89.99829 * 19 17 15 21 21 H 1.48499 * 109.47212 * 209.99496 * 19 17 15 22 22 H 1.48498 * 109.47272 * 329.99960 * 19 17 15 23 23 C 1.39975 * 119.77611 * 0.47708 * 6 5 4 24 24 C 1.37663 * 119.88039 * 359.77588 * 23 6 5 25 25 H 1.09004 * 109.47038 * 59.99807 * 1 2 3 26 26 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47409 * 299.99887 * 1 2 3 28 28 H 1.07999 * 119.94141 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.05871 * 179.74072 * 5 4 3 30 30 H 1.08007 * 120.00057 * 223.72959 * 7 6 5 31 31 H 1.07999 * 120.00416 * 190.41066 * 8 7 6 32 32 H 0.97004 * 119.99634 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.46876 * 300.00373 * 12 11 9 34 34 H 1.08998 * 109.47314 * 59.99730 * 12 11 9 35 35 H 1.09001 * 109.46605 * 299.99720 * 13 12 11 36 36 H 1.08998 * 109.47451 * 59.99358 * 13 12 11 37 37 H 1.09007 * 109.46827 * 299.99804 * 14 13 12 38 38 H 1.08998 * 109.47500 * 59.99244 * 14 13 12 39 39 H 0.97006 * 119.99817 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.06050 * 179.79937 * 23 6 5 41 41 H 1.07999 * 119.93805 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4337 1.2794 0.0005 5 6 4.0635 2.5034 0.0058 6 6 3.3035 3.6788 0.0001 7 6 3.9709 4.9886 0.0006 8 6 5.0335 5.2050 -0.8031 9 6 5.3821 4.2272 -1.8334 10 8 4.6409 3.2880 -2.0569 11 7 6.5241 4.3662 -2.5356 12 6 6.8731 3.3873 -3.5680 13 6 8.2079 3.7745 -4.2078 14 6 8.5720 2.7524 -5.2865 15 6 9.8870 3.1335 -5.9162 16 1 10.4104 4.0166 -5.5809 17 6 10.4213 2.3553 -6.9211 18 7 9.7836 1.2801 -7.3298 19 14 12.0510 2.8280 -7.7022 20 1 13.1626 2.1873 -6.9545 21 1 12.0748 2.3688 -9.1142 22 1 12.2111 4.3037 -7.6588 23 6 1.9058 3.6029 -0.0009 24 6 1.2857 2.3738 -0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.0192 0.3719 0.0014 29 1 5.1422 2.5568 0.0105 30 1 3.6109 5.7779 0.6440 31 1 5.6263 6.1000 -0.6854 32 1 7.1150 5.1146 -2.3573 33 1 6.9600 2.3988 -3.1168 34 1 6.0951 3.3711 -4.3312 35 1 8.1212 4.7630 -4.6589 36 1 8.9857 3.7905 -3.4444 37 1 8.6584 1.7637 -4.8357 38 1 7.7941 2.7369 -6.0498 39 1 10.1597 0.7324 -8.0366 40 1 1.3149 4.5069 -0.0021 41 1 0.2074 2.3142 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491491623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:31 Heat of formation + Delta-G solvation = -58.626648 kcal Electronic energy + Delta-G solvation = -21604.228718 eV Core-core repulsion = 18255.841993 eV Total energy + Delta-G solvation = -3348.386724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27255 -40.53073 -38.43729 -36.89518 -35.16534 -34.35746 -33.01202 -32.06183 -30.20537 -28.69770 -28.02002 -25.54468 -23.95318 -23.53885 -22.30185 -22.28103 -20.23155 -19.17482 -18.53726 -18.14726 -17.17205 -16.82346 -16.66249 -16.62131 -16.43265 -15.86043 -15.61545 -14.98315 -14.78728 -14.57148 -14.40467 -14.26959 -13.90655 -13.73271 -13.55814 -13.37980 -12.81584 -12.74411 -12.59680 -12.52636 -12.37009 -12.05549 -11.76908 -11.68071 -11.55191 -11.23754 -10.74883 -10.56787 -10.56059 -10.07336 -9.66551 -8.68927 -8.20578 -6.32523 -0.15744 0.51935 0.96505 1.40873 1.42568 1.53587 2.34465 2.38801 2.42047 2.45255 2.91377 3.13035 3.84404 3.91014 3.96744 4.01662 4.20535 4.20928 4.29698 4.37833 4.39921 4.49713 4.54574 4.67631 4.70772 4.74565 4.93499 4.99753 5.06997 5.10864 5.15722 5.30640 5.36771 5.46734 5.50284 5.55657 5.68930 5.73383 5.82735 5.86261 6.20911 6.47717 6.71000 6.85380 7.37029 7.38835 8.91673 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.002644 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.447119 B =10588.844520 C =11589.698248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.122 3.878 4 C -0.192 4.192 5 C -0.007 4.007 6 C -0.126 4.126 7 C -0.008 4.008 8 C -0.220 4.220 9 C 0.522 3.478 10 O -0.573 6.573 11 N -0.712 5.712 12 C 0.133 3.867 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.259 1.259 23 C -0.061 4.061 24 C -0.226 4.226 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.178 0.822 31 H 0.171 0.829 32 H 0.415 0.585 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.068 0.932 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.156 0.844 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 8.765 19.973 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.077 3.923 4 C -0.211 4.211 5 C -0.026 4.026 6 C -0.127 4.127 7 C -0.027 4.027 8 C -0.240 4.240 9 C 0.313 3.687 10 O -0.455 6.455 11 N -0.364 5.364 12 C 0.008 3.992 13 C -0.139 4.139 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.079 4.079 24 C -0.245 4.245 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.196 0.804 31 H 0.188 0.812 32 H 0.252 0.748 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.174 0.826 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.991 7.771 19.671 27.767 hybrid contribution 1.008 -0.232 -0.973 1.420 sum -16.983 7.538 18.698 26.360 Atomic orbital electron populations 1.23344 0.76353 1.05495 1.02339 1.85997 1.23692 1.27392 1.88507 1.19334 0.92206 0.84972 0.95786 1.20362 0.92249 0.98713 1.09778 1.20883 0.98743 0.91387 0.91560 1.19126 0.93936 0.93558 1.06039 1.22698 0.91164 0.94254 0.94599 1.23133 1.01560 1.01555 0.97752 1.19256 0.80617 0.85900 0.82939 1.90890 1.51059 1.34446 1.69130 1.45993 1.23225 1.29480 1.37669 1.21134 0.96689 0.91736 0.89598 1.21585 0.94456 0.99816 0.98012 1.18944 0.95319 0.93932 0.93232 1.21685 1.06494 1.10557 1.19157 0.91440 1.26060 1.01753 0.94880 0.97555 1.70125 1.40860 1.16688 1.29996 0.85388 0.78871 0.79108 0.77321 1.19767 1.21027 1.18316 1.21329 0.93083 0.98051 0.95426 1.21321 1.00895 0.91791 1.10471 0.92100 0.86501 0.91045 0.86563 0.87323 0.80442 0.81157 0.74843 0.93667 0.93771 0.91386 0.91342 0.99183 0.99175 0.92805 0.82634 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.62 10.48 -90.61 -0.95 -9.57 16 3 C 0.12 3.31 6.70 22.65 0.15 3.46 16 4 C -0.19 -5.81 9.97 22.32 0.22 -5.58 16 5 C -0.01 -0.21 6.57 22.55 0.15 -0.06 16 6 C -0.13 -2.95 4.55 -20.14 -0.09 -3.04 16 7 C -0.01 -0.13 9.80 23.82 0.23 0.10 16 8 C -0.22 -3.97 9.92 23.60 0.23 -3.74 16 9 C 0.52 14.85 6.76 86.33 0.58 15.43 16 10 O -0.57 -21.18 12.12 -4.40 -0.05 -21.24 16 11 N -0.71 -19.73 5.55 -467.51 -2.60 -22.32 16 12 C 0.13 4.84 5.67 86.38 0.49 5.33 16 13 C -0.10 -3.96 5.27 30.59 0.16 -3.80 16 14 C 0.02 1.25 4.97 29.85 0.15 1.39 16 15 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -58.08 13.29 21.45 0.28 -57.80 16 19 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 C -0.06 -1.23 9.79 22.55 0.22 -1.01 16 24 C -0.23 -4.89 9.01 22.32 0.20 -4.68 16 25 H 0.06 0.80 7.65 -2.38 -0.02 0.79 16 26 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 28 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.11 3.21 6.99 -2.91 -0.02 3.19 16 30 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.41 8.52 8.45 -92.71 -0.78 7.74 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.15 2.30 6.27 -2.91 -0.02 2.28 16 Total: -1.00 -77.25 347.95 3.46 -73.79 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.24 Total: 15.93 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 4.51 Total: -25.01 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -2.31 Total: -80.12 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.00 Total: -30.81 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.25 3.46 -73.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491491623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.161 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds