Wall clock time and date at job start Tue Mar 31 2020 06:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35913 * 116.99664 * 2 1 4 4 C 1.38892 * 119.97263 * 359.97438 * 3 2 1 5 5 C 1.38288 * 120.28780 * 180.02562 * 4 3 2 6 6 C 1.37942 * 120.23427 * 0.02562 * 5 4 3 7 7 C 1.39829 * 119.93589 * 359.97438 * 6 5 4 8 8 C 1.47216 * 120.14372 * 179.97438 * 7 6 5 9 9 C 1.34807 * 120.00011 * 136.37909 * 8 7 6 10 10 C 1.46426 * 120.00086 * 349.03675 * 9 8 7 11 11 O 1.21697 * 119.99973 * 353.21040 * 10 9 8 12 12 N 1.34770 * 119.99898 * 173.22044 * 10 9 8 13 13 C 1.46501 * 119.99960 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47122 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47072 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47102 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00372 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00118 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 59.99874 * 20 18 16 22 22 H 1.48498 * 109.47500 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47303 * 300.00197 * 20 18 16 24 24 C 1.38387 * 119.96606 * 180.27489 * 3 2 1 25 25 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47388 * 300.00686 * 1 2 3 27 27 H 1.09004 * 109.46981 * 60.00464 * 1 2 3 28 28 H 1.08002 * 119.86163 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.88480 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.02966 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.99626 * 316.37721 * 8 7 6 32 32 H 1.08000 * 119.99508 * 169.02983 * 9 8 7 33 33 H 0.97001 * 120.00449 * 359.97438 * 12 10 9 34 34 H 1.08994 * 109.47188 * 299.99692 * 13 12 10 35 35 H 1.09005 * 109.47242 * 59.99815 * 13 12 10 36 36 H 1.09004 * 109.47215 * 300.00220 * 14 13 12 37 37 H 1.08998 * 109.47134 * 60.00290 * 14 13 12 38 38 H 1.08994 * 109.47227 * 300.00166 * 15 14 13 39 39 H 1.08998 * 109.46890 * 60.00157 * 15 14 13 40 40 H 0.96995 * 120.00857 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.11731 * 359.97397 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2889 2.3755 -0.0005 5 6 1.9099 3.6111 -0.0011 6 6 3.2867 3.6966 -0.0016 7 6 4.0582 2.5304 -0.0011 8 6 5.5279 2.6163 -0.0022 9 6 6.2506 1.8127 0.8034 10 6 5.5839 1.0301 1.8461 11 8 4.3989 1.1965 2.0677 12 7 6.2826 0.1258 2.5604 13 6 5.6157 -0.6568 3.6040 14 6 6.6261 -1.6025 4.2565 15 6 5.9297 -2.4193 5.3469 16 6 6.9250 -3.3504 5.9900 17 1 7.9515 -3.3589 5.6543 18 6 6.5249 -4.1919 7.0061 19 7 5.2746 -4.1826 7.4139 20 14 7.7588 -5.3455 7.8038 21 1 8.8596 -4.5523 8.4074 22 1 7.0829 -6.1384 8.8620 23 1 8.3150 -6.2625 6.7766 24 6 3.4280 1.2827 -0.0058 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2106 2.3158 -0.0005 29 1 1.3148 4.5124 -0.0019 30 1 3.7682 4.6633 -0.0016 31 1 6.0269 3.3232 -0.6486 32 1 7.3215 1.7460 0.6797 33 1 7.2271 -0.0070 2.3837 34 1 5.2079 0.0163 4.3582 35 1 4.8073 -1.2387 3.1611 36 1 7.0336 -2.2755 3.5021 37 1 7.4346 -1.0209 4.6994 38 1 5.5226 -1.7460 6.1011 39 1 5.1209 -3.0009 4.9044 40 1 4.9932 -4.7744 8.1290 41 1 4.0176 0.3779 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:35 Heat of formation + Delta-G solvation = -35.770363 kcal Electronic energy + Delta-G solvation = -21871.675444 eV Core-core repulsion = 18524.279842 eV Total energy + Delta-G solvation = -3347.395601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28964 -39.34805 -37.43316 -35.41370 -33.64448 -33.27767 -31.28632 -30.54398 -29.49485 -27.30648 -26.78828 -24.26222 -22.88818 -22.17199 -21.20815 -20.60329 -19.24032 -18.05563 -16.59445 -16.40201 -16.27354 -15.93781 -15.71483 -15.31250 -15.13539 -14.47529 -14.32943 -14.12392 -13.64419 -13.51991 -13.29976 -12.81225 -12.53009 -12.24778 -12.02256 -11.80639 -11.67267 -11.65119 -11.21547 -10.89279 -10.86072 -10.70025 -10.61082 -10.06316 -9.84030 -9.76896 -9.37757 -9.11591 -8.71295 -8.35662 -8.20141 -8.04544 -6.00290 -4.03540 0.65673 1.55315 1.83156 3.28869 3.32877 3.37489 3.39259 3.48191 3.55068 3.85110 4.45403 4.59362 4.77180 4.88591 4.99443 5.03021 5.08738 5.20701 5.25012 5.35245 5.38861 5.46151 5.54043 5.74321 5.82083 5.90281 6.06400 6.08622 6.20600 6.32672 6.41939 6.54309 6.55785 6.63420 6.76349 6.88723 7.03521 7.44649 7.65073 7.78313 7.80461 7.98521 8.39242 8.50112 9.02992 9.60497 11.10999 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.002938 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.533994 B = 9526.531707 C =10540.653565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.116 3.884 4 C -0.199 4.199 5 C -0.097 4.097 6 C -0.137 4.137 7 C -0.033 4.033 8 C -0.034 4.034 9 C -0.201 4.201 10 C 0.527 3.473 11 O -0.528 6.528 12 N -0.720 5.720 13 C 0.117 3.883 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.066 4.066 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.397 0.603 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 15.515 -18.906 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.071 3.929 4 C -0.217 4.217 5 C -0.115 4.115 6 C -0.156 4.156 7 C -0.033 4.033 8 C -0.053 4.053 9 C -0.222 4.222 10 C 0.315 3.685 11 O -0.407 6.407 12 N -0.370 5.370 13 C -0.005 4.005 14 C -0.159 4.159 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.085 4.085 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.231 0.769 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.074 15.320 -18.578 24.608 hybrid contribution 0.911 -0.630 0.627 1.273 sum -4.163 14.690 -17.951 23.566 Atomic orbital electron populations 1.23010 0.78758 1.03807 1.00987 1.86103 1.21052 1.26921 1.88957 1.18790 0.92165 0.84134 0.97820 1.21235 0.99678 0.92494 1.08320 1.20687 0.94456 0.96683 0.99653 1.21030 0.93651 0.97202 1.03695 1.18578 0.92483 0.92590 0.99643 1.22316 0.92175 0.95123 0.95726 1.23128 1.00638 1.00394 0.97999 1.18487 0.86993 0.80265 0.82792 1.90914 1.14807 1.66749 1.68211 1.46195 1.13507 1.39652 1.37666 1.21620 0.96441 0.93564 0.88914 1.21887 0.97565 0.97049 0.99367 1.19021 0.95839 0.94276 0.92210 1.21174 0.95893 1.20831 1.18227 0.92704 1.25027 0.95219 0.97293 0.96913 1.69954 1.15800 1.38763 1.28794 0.86642 0.81306 0.80897 0.79043 1.20252 1.21270 1.20236 1.20301 0.91167 0.97267 0.99756 0.88364 0.92740 0.93022 0.85928 0.86104 0.86118 0.84485 0.84858 0.76898 0.91855 0.91773 0.92755 0.92786 0.96325 0.96290 0.92874 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.58 10.49 -19.47 -0.20 -4.78 16 3 C 0.12 1.68 6.68 -39.28 -0.26 1.42 16 4 C -0.20 -2.42 9.03 -39.32 -0.36 -2.78 16 5 C -0.10 -1.07 10.02 -39.67 -0.40 -1.47 16 6 C -0.14 -1.56 9.79 -39.10 -0.38 -1.95 16 7 C -0.03 -0.42 4.53 -105.08 -0.48 -0.89 16 8 C -0.03 -0.34 9.81 -37.15 -0.36 -0.70 16 9 C -0.20 -2.15 9.91 -37.50 -0.37 -2.52 16 10 C 0.53 7.91 6.79 -12.97 -0.09 7.82 16 11 O -0.53 -9.83 12.16 5.19 0.06 -9.77 16 12 N -0.72 -10.55 5.55 -61.70 -0.34 -10.89 16 13 C 0.12 2.13 5.67 -4.04 -0.02 2.11 16 14 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.07 -0.98 6.54 -38.95 -0.25 -1.24 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.12 1.20 6.28 -52.49 -0.33 0.87 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.40 4.63 8.45 -40.82 -0.35 4.29 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.12 1.91 7.03 -52.49 -0.37 1.54 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -34.41 348.10 -8.23 -42.63 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.03 Total: 1.83 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.67 Total: -14.53 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.39 Total: -37.26 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.14 Total: -14.55 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.41 -8.23 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.863 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds