Wall clock time and date at job start Tue Mar 31 2020 06:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35913 * 116.99664 * 2 1 4 4 C 1.38892 * 119.97263 * 359.97438 * 3 2 1 5 5 C 1.38288 * 120.28780 * 180.02562 * 4 3 2 6 6 C 1.37942 * 120.23427 * 0.02562 * 5 4 3 7 7 C 1.39829 * 119.93589 * 359.97438 * 6 5 4 8 8 C 1.47216 * 120.14372 * 179.97438 * 7 6 5 9 9 C 1.34807 * 120.00011 * 136.37909 * 8 7 6 10 10 C 1.46426 * 120.00086 * 349.03675 * 9 8 7 11 11 O 1.21697 * 119.99973 * 353.21040 * 10 9 8 12 12 N 1.34770 * 119.99898 * 173.22044 * 10 9 8 13 13 C 1.46501 * 119.99960 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47122 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47072 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47102 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00372 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00118 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 59.99874 * 20 18 16 22 22 H 1.48498 * 109.47500 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47303 * 300.00197 * 20 18 16 24 24 C 1.38387 * 119.96606 * 180.27489 * 3 2 1 25 25 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47388 * 300.00686 * 1 2 3 27 27 H 1.09004 * 109.46981 * 60.00464 * 1 2 3 28 28 H 1.08002 * 119.86163 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.88480 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.02966 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.99626 * 316.37721 * 8 7 6 32 32 H 1.08000 * 119.99508 * 169.02983 * 9 8 7 33 33 H 0.97001 * 120.00449 * 359.97438 * 12 10 9 34 34 H 1.08994 * 109.47188 * 299.99692 * 13 12 10 35 35 H 1.09005 * 109.47242 * 59.99815 * 13 12 10 36 36 H 1.09004 * 109.47215 * 300.00220 * 14 13 12 37 37 H 1.08998 * 109.47134 * 60.00290 * 14 13 12 38 38 H 1.08994 * 109.47227 * 300.00166 * 15 14 13 39 39 H 1.08998 * 109.46890 * 60.00157 * 15 14 13 40 40 H 0.96995 * 120.00857 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.11731 * 359.97397 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2889 2.3755 -0.0005 5 6 1.9099 3.6111 -0.0011 6 6 3.2867 3.6966 -0.0016 7 6 4.0582 2.5304 -0.0011 8 6 5.5279 2.6163 -0.0022 9 6 6.2506 1.8127 0.8034 10 6 5.5839 1.0301 1.8461 11 8 4.3989 1.1965 2.0677 12 7 6.2826 0.1258 2.5604 13 6 5.6157 -0.6568 3.6040 14 6 6.6261 -1.6025 4.2565 15 6 5.9297 -2.4193 5.3469 16 6 6.9250 -3.3504 5.9900 17 1 7.9515 -3.3589 5.6543 18 6 6.5249 -4.1919 7.0061 19 7 5.2746 -4.1826 7.4139 20 14 7.7588 -5.3455 7.8038 21 1 8.8596 -4.5523 8.4074 22 1 7.0829 -6.1384 8.8620 23 1 8.3150 -6.2625 6.7766 24 6 3.4280 1.2827 -0.0058 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2106 2.3158 -0.0005 29 1 1.3148 4.5124 -0.0019 30 1 3.7682 4.6633 -0.0016 31 1 6.0269 3.3232 -0.6486 32 1 7.3215 1.7460 0.6797 33 1 7.2271 -0.0070 2.3837 34 1 5.2079 0.0163 4.3582 35 1 4.8073 -1.2387 3.1611 36 1 7.0336 -2.2755 3.5021 37 1 7.4346 -1.0209 4.6994 38 1 5.5226 -1.7460 6.1011 39 1 5.1209 -3.0009 4.9044 40 1 4.9932 -4.7744 8.1290 41 1 4.0176 0.3779 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491492822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:35 Heat of formation + Delta-G solvation = -58.372671 kcal Electronic energy + Delta-G solvation = -21872.655553 eV Core-core repulsion = 18524.279842 eV Total energy + Delta-G solvation = -3348.375711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29355 -40.45704 -38.40761 -36.94414 -35.19327 -34.55212 -33.06390 -31.48797 -30.49484 -28.65308 -28.05426 -25.69470 -24.27049 -23.17298 -22.31912 -22.30580 -20.33996 -19.08298 -18.52374 -17.59435 -17.25562 -16.87972 -16.68078 -16.64693 -16.54234 -16.38779 -15.37090 -15.30032 -14.82134 -14.48907 -14.36945 -14.18076 -13.76242 -13.72401 -13.54973 -13.33260 -12.81671 -12.71911 -12.57449 -12.50302 -12.41653 -12.08973 -11.77222 -11.68403 -11.57389 -11.26946 -10.94083 -10.70163 -10.56517 -10.01784 -9.13871 -9.03757 -8.20627 -6.32912 -0.23377 0.61045 0.93050 1.40556 1.44138 1.51997 2.32489 2.35333 2.43895 2.48243 2.92603 3.12737 3.77815 3.91424 3.97527 4.15872 4.18777 4.19131 4.25582 4.33917 4.38465 4.52525 4.54797 4.55104 4.66179 4.68803 4.91879 4.98257 5.06365 5.14053 5.16817 5.28213 5.42582 5.45564 5.52871 5.55032 5.65385 5.67810 5.81905 5.91496 6.20265 6.51828 6.68572 6.84501 7.36149 7.37366 8.91494 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.002938 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.533994 B = 9526.531707 C =10540.653565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.349 6.349 3 C 0.088 3.912 4 C -0.207 4.207 5 C -0.098 4.098 6 C -0.141 4.141 7 C -0.048 4.048 8 C -0.020 4.020 9 C -0.207 4.207 10 C 0.518 3.482 11 O -0.571 6.571 12 N -0.712 5.712 13 C 0.134 3.866 14 C -0.101 4.101 15 C 0.024 3.976 16 C -0.543 4.543 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.095 4.095 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.415 0.585 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.069 0.931 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 17.201 -20.104 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.264 6.264 3 C 0.043 3.957 4 C -0.225 4.225 5 C -0.116 4.116 6 C -0.159 4.159 7 C -0.048 4.048 8 C -0.040 4.040 9 C -0.228 4.228 10 C 0.309 3.691 11 O -0.452 6.452 12 N -0.364 5.364 13 C 0.009 3.991 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.581 4.581 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.114 4.114 25 H 0.130 0.870 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.160 0.840 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.202 0.798 32 H 0.193 0.807 33 H 0.252 0.748 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.024 17.018 -19.804 26.286 hybrid contribution 0.164 -1.111 0.967 1.482 sum -2.860 15.907 -18.837 24.820 Atomic orbital electron populations 1.23259 0.76786 1.05133 1.02040 1.86046 1.23350 1.27708 1.89294 1.19133 0.92614 0.84922 0.99009 1.21529 1.00715 0.92257 1.08035 1.21157 0.95010 0.97313 0.98148 1.21467 0.93924 0.98000 1.02475 1.18996 0.94407 0.92215 0.99168 1.22790 0.90748 0.94959 0.95466 1.23216 1.02453 0.99919 0.97171 1.19324 0.86621 0.79954 0.83235 1.90907 1.16848 1.67994 1.69449 1.45972 1.14307 1.39323 1.36780 1.21123 0.95601 0.93027 0.89307 1.21592 0.97479 0.96891 0.97890 1.18934 0.95243 0.94028 0.93150 1.21656 0.96759 1.21170 1.18498 0.91427 1.26059 0.97271 0.99225 0.97629 1.70112 1.18140 1.39878 1.29512 0.85438 0.78646 0.78535 0.78046 1.18900 1.21104 1.18960 1.20354 0.91540 0.97523 1.01945 0.87033 0.92559 0.90961 0.84001 0.82948 0.82951 0.79800 0.80739 0.74818 0.93696 0.94041 0.91422 0.91228 0.99140 0.99281 0.92776 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.35 -10.80 10.49 -92.58 -0.97 -11.77 16 3 C 0.09 2.67 6.68 22.46 0.15 2.82 16 4 C -0.21 -4.98 9.03 22.44 0.20 -4.77 16 5 C -0.10 -2.00 10.02 22.21 0.22 -1.78 16 6 C -0.14 -2.88 9.79 22.58 0.22 -2.66 16 7 C -0.05 -1.17 4.53 -20.16 -0.09 -1.26 16 8 C -0.02 -0.35 9.81 23.84 0.23 -0.12 16 9 C -0.21 -3.94 9.91 23.62 0.23 -3.71 16 10 C 0.52 15.48 6.79 86.38 0.59 16.07 16 11 O -0.57 -22.06 12.16 -4.34 -0.05 -22.11 16 12 N -0.71 -20.63 5.55 -467.34 -2.59 -23.22 16 13 C 0.13 5.05 5.67 86.38 0.49 5.54 16 14 C -0.10 -4.04 5.27 30.60 0.16 -3.88 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 18 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 19 N -0.94 -58.28 13.29 21.44 0.28 -57.99 16 20 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.09 -2.94 6.54 22.68 0.15 -2.79 16 25 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 27 H 0.07 1.10 7.66 -2.39 -0.02 1.09 16 28 H 0.14 2.67 6.28 -2.91 -0.02 2.65 16 29 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.41 8.93 8.45 -92.71 -0.78 8.15 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.10 3.33 7.03 -2.91 -0.02 3.31 16 Total: -1.00 -79.10 348.10 3.45 -75.65 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.24 Total: 17.10 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.52 Total: -24.02 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.31 Total: -81.21 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.02 Total: -33.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -79.10 3.45 -75.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.281 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds