Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47487 * 2 1 4 4 C 1.35686 * 117.00189 * 179.97438 * 3 2 1 5 5 C 1.38609 * 120.15812 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.11119 * 179.97438 * 5 4 3 7 7 C 1.38575 * 120.43317 * 359.97438 * 6 5 4 8 8 C 1.37752 * 120.31785 * 359.97438 * 7 6 5 9 9 C 1.39921 * 119.88354 * 0.02562 * 8 7 6 10 10 C 1.46940 * 120.21455 * 179.97438 * 9 8 7 11 11 C 1.35005 * 119.99875 * 359.97438 * 10 9 8 12 12 C 1.46242 * 119.99910 * 180.02562 * 11 10 9 13 13 O 1.21720 * 120.00130 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99620 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99668 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47164 * 324.99512 * 15 14 12 17 17 C 1.53001 * 109.47355 * 84.99824 * 15 14 12 18 18 C 1.50702 * 109.46950 * 204.99485 * 15 14 12 19 19 H 1.07997 * 119.99958 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99965 * 179.97438 * 18 15 14 21 21 N 1.31521 * 119.99941 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00081 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47090 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47248 * 120.00495 * 22 20 18 25 25 H 1.48502 * 109.47236 * 240.00612 * 22 20 18 26 26 H 1.08999 * 109.47486 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47026 * 300.00845 * 1 2 3 28 28 H 1.09011 * 109.46788 * 60.00207 * 1 2 3 29 29 H 1.08998 * 109.47026 * 239.99155 * 2 1 3 30 30 H 1.08998 * 109.46517 * 119.99871 * 2 1 3 31 31 H 1.07998 * 119.94624 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.78516 * 180.27299 * 6 5 4 33 33 H 1.07996 * 119.83602 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.05488 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.00623 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00229 * 359.97438 * 11 10 9 37 37 H 0.96998 * 120.00626 * 359.97438 * 14 12 11 38 38 H 1.08995 * 109.47096 * 300.00238 * 17 15 14 39 39 H 1.09002 * 109.47196 * 60.00211 * 17 15 14 40 40 H 1.08997 * 109.46980 * 179.97438 * 17 15 14 41 41 H 0.97001 * 119.99334 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3516 1.5250 0.0005 5 6 4.1989 0.4281 0.0005 6 6 5.5682 0.6101 0.0005 7 6 6.1065 1.8870 0.0000 8 6 5.2809 2.9897 -0.0010 9 6 3.8919 2.8207 -0.0010 10 6 3.0045 3.9918 -0.0016 11 6 3.5286 5.2359 -0.0016 12 6 2.6454 6.4015 -0.0015 13 8 1.4377 6.2500 -0.0020 14 7 3.1688 7.6435 -0.0020 15 6 2.2840 8.8112 -0.0014 16 1 1.3932 8.5923 -0.5902 17 6 1.8768 9.1418 1.4358 18 6 3.0065 9.9892 -0.6024 19 1 4.0230 9.8790 -0.9504 20 6 2.3696 11.2074 -0.7090 21 7 1.1316 11.3414 -0.2857 22 14 3.2650 12.6675 -1.4546 23 1 4.6364 12.2576 -1.8504 24 1 2.5259 13.1427 -2.6517 25 1 3.3444 13.7626 -0.4548 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.7879 -0.5707 -0.0003 32 1 6.2235 -0.2483 -0.0039 33 1 7.1784 2.0182 -0.0004 34 1 5.7050 3.9830 -0.0010 35 1 1.9328 3.8574 -0.0020 36 1 4.6002 5.3704 -0.0007 37 1 4.1312 7.7643 -0.0020 38 1 1.3542 8.2898 1.8706 39 1 2.7676 9.3608 2.0246 40 1 1.2188 10.0109 1.4362 41 1 0.6838 12.1986 -0.3603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491829127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -43.634622 kcal Electronic energy + Delta-G solvation = -21738.233539 eV Core-core repulsion = 18390.496918 eV Total energy + Delta-G solvation = -3347.736621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40508 -38.75416 -37.73687 -34.86398 -33.84761 -32.30786 -32.09540 -30.19879 -29.56907 -28.40842 -25.21991 -24.64653 -23.78618 -21.93815 -21.58195 -19.89100 -18.98712 -18.45316 -17.20954 -16.36197 -16.26827 -15.86263 -15.42079 -15.06769 -14.71083 -14.20410 -13.92649 -13.68761 -13.64603 -13.55551 -12.93810 -12.85242 -12.39163 -12.31725 -12.20007 -12.00362 -11.65536 -11.20143 -11.09002 -11.02015 -10.99685 -10.93924 -10.69904 -10.29409 -10.21007 -10.18595 -9.02827 -8.97777 -8.80369 -8.50952 -8.02465 -7.73604 -6.08308 -4.17240 0.61332 1.22861 2.18461 2.93429 3.26359 3.33892 3.36888 3.63053 4.14696 4.17326 4.40241 4.51956 4.62256 4.63095 4.77975 4.83996 4.93360 5.10729 5.13914 5.23462 5.24086 5.36906 5.48725 5.52799 5.70552 5.79460 5.88693 5.98171 6.09510 6.29066 6.52114 6.61729 6.73831 6.89851 7.03658 7.20690 7.21747 7.53626 7.63843 7.76097 7.98122 8.20212 8.75237 8.84275 9.22438 9.50591 10.97825 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.002943 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.897520 B = 9510.966719 C =10418.567425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.306 6.306 4 C 0.148 3.852 5 C -0.213 4.213 6 C -0.077 4.077 7 C -0.159 4.159 8 C -0.068 4.068 9 C -0.093 4.093 10 C -0.036 4.036 11 C -0.196 4.196 12 C 0.530 3.470 13 O -0.559 6.559 14 N -0.703 5.703 15 C 0.263 3.737 16 H 0.049 0.951 17 C -0.147 4.147 18 C -0.532 4.532 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.902 3.098 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.389 0.611 38 H 0.015 0.985 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -23.528 1.248 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.219 6.219 4 C 0.102 3.898 5 C -0.232 4.232 6 C -0.095 4.095 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.094 4.094 10 C -0.055 4.055 11 C -0.217 4.217 12 C 0.317 3.683 13 O -0.441 6.441 14 N -0.350 5.350 15 C 0.161 3.839 16 H 0.067 0.933 17 C -0.205 4.205 18 C -0.571 4.571 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.221 0.779 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.368 -23.294 1.260 24.181 hybrid contribution 1.100 0.618 -0.364 1.314 sum 7.468 -22.675 0.896 23.890 Atomic orbital electron populations 1.21791 0.92490 1.02775 1.04072 1.22823 0.96200 0.81810 1.01247 1.86092 1.18696 1.29332 1.87790 1.19148 0.82506 0.93299 0.94830 1.21161 0.94405 0.97822 1.09830 1.21021 0.94196 0.97399 0.96880 1.20988 1.00003 0.92273 1.04467 1.21341 0.91481 0.99644 0.96173 1.18463 0.93179 0.90577 1.07142 1.22085 0.99912 0.90239 0.93308 1.23165 0.99809 0.93352 1.05368 1.18222 0.88218 0.83944 0.77907 1.90765 1.15117 1.86583 1.51608 1.46442 1.10561 1.06306 1.71681 1.18751 0.90255 0.80930 0.93987 0.93318 1.22072 1.00065 1.01014 0.97378 1.21273 1.00138 0.94482 1.41162 0.92016 1.24900 0.94917 0.98761 0.95229 1.69924 1.11197 1.24995 1.46018 0.86391 0.79685 0.82150 0.78848 1.19740 1.20900 1.20896 0.90408 0.91232 0.91227 0.92018 0.92025 0.85400 0.85813 0.85631 0.84633 0.84447 0.86009 0.77886 0.96608 0.95493 0.89170 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.81 9.32 -18.76 -0.17 -3.98 16 4 C 0.15 1.83 6.70 -38.64 -0.26 1.57 16 5 C -0.21 -2.07 9.03 -39.49 -0.36 -2.43 16 6 C -0.08 -0.67 10.03 -39.50 -0.40 -1.07 16 7 C -0.16 -1.48 10.02 -39.63 -0.40 -1.87 16 8 C -0.07 -0.76 9.41 -39.13 -0.37 -1.13 16 9 C -0.09 -1.24 5.88 -104.94 -0.62 -1.86 16 10 C -0.04 -0.56 9.21 -37.21 -0.34 -0.91 16 11 C -0.20 -3.21 9.41 -37.52 -0.35 -3.57 16 12 C 0.53 11.41 7.70 -13.05 -0.10 11.31 16 13 O -0.56 -14.32 15.89 5.17 0.08 -14.24 16 14 N -0.70 -15.44 5.06 -56.38 -0.29 -15.72 16 15 C 0.26 6.94 2.56 -69.08 -0.18 6.77 16 16 H 0.05 1.48 7.57 -51.93 -0.39 1.09 16 17 C -0.15 -3.79 9.26 37.16 0.34 -3.44 16 18 C -0.53 -14.46 8.73 -34.44 -0.30 -14.76 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -25.40 11.32 55.43 0.63 -24.77 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.30 6.17 -52.48 -0.32 0.98 16 35 H 0.14 2.43 7.10 -52.49 -0.37 2.06 16 36 H 0.12 1.57 6.07 -52.49 -0.32 1.25 16 37 H 0.39 7.30 8.52 -40.82 -0.35 6.95 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -32.99 347.44 -8.07 -41.06 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.70 Total: 6.27 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.83 Total: -9.79 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.34 Total: -40.50 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.09 Total: -18.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.99 -8.07 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491829127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.576 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds