Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47487 * 2 1 4 4 C 1.35686 * 117.00189 * 179.97438 * 3 2 1 5 5 C 1.38609 * 120.15812 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.11119 * 179.97438 * 5 4 3 7 7 C 1.38575 * 120.43317 * 359.97438 * 6 5 4 8 8 C 1.37752 * 120.31785 * 359.97438 * 7 6 5 9 9 C 1.39921 * 119.88354 * 0.02562 * 8 7 6 10 10 C 1.46940 * 120.21455 * 179.97438 * 9 8 7 11 11 C 1.35005 * 119.99875 * 359.97438 * 10 9 8 12 12 C 1.46242 * 119.99910 * 180.02562 * 11 10 9 13 13 O 1.21720 * 120.00130 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99620 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99668 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47164 * 324.99512 * 15 14 12 17 17 C 1.53001 * 109.47355 * 84.99824 * 15 14 12 18 18 C 1.50702 * 109.46950 * 204.99485 * 15 14 12 19 19 H 1.07997 * 119.99958 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99965 * 179.97438 * 18 15 14 21 21 N 1.31521 * 119.99941 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00081 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47090 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47248 * 120.00495 * 22 20 18 25 25 H 1.48502 * 109.47236 * 240.00612 * 22 20 18 26 26 H 1.08999 * 109.47486 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47026 * 300.00845 * 1 2 3 28 28 H 1.09011 * 109.46788 * 60.00207 * 1 2 3 29 29 H 1.08998 * 109.47026 * 239.99155 * 2 1 3 30 30 H 1.08998 * 109.46517 * 119.99871 * 2 1 3 31 31 H 1.07998 * 119.94624 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.78516 * 180.27299 * 6 5 4 33 33 H 1.07996 * 119.83602 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.05488 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.00623 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00229 * 359.97438 * 11 10 9 37 37 H 0.96998 * 120.00626 * 359.97438 * 14 12 11 38 38 H 1.08995 * 109.47096 * 300.00238 * 17 15 14 39 39 H 1.09002 * 109.47196 * 60.00211 * 17 15 14 40 40 H 1.08997 * 109.46980 * 179.97438 * 17 15 14 41 41 H 0.97001 * 119.99334 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3516 1.5250 0.0005 5 6 4.1989 0.4281 0.0005 6 6 5.5682 0.6101 0.0005 7 6 6.1065 1.8870 0.0000 8 6 5.2809 2.9897 -0.0010 9 6 3.8919 2.8207 -0.0010 10 6 3.0045 3.9918 -0.0016 11 6 3.5286 5.2359 -0.0016 12 6 2.6454 6.4015 -0.0015 13 8 1.4377 6.2500 -0.0020 14 7 3.1688 7.6435 -0.0020 15 6 2.2840 8.8112 -0.0014 16 1 1.3932 8.5923 -0.5902 17 6 1.8768 9.1418 1.4358 18 6 3.0065 9.9892 -0.6024 19 1 4.0230 9.8790 -0.9504 20 6 2.3696 11.2074 -0.7090 21 7 1.1316 11.3414 -0.2857 22 14 3.2650 12.6675 -1.4546 23 1 4.6364 12.2576 -1.8504 24 1 2.5259 13.1427 -2.6517 25 1 3.3444 13.7626 -0.4548 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.7879 -0.5707 -0.0003 32 1 6.2235 -0.2483 -0.0039 33 1 7.1784 2.0182 -0.0004 34 1 5.7050 3.9830 -0.0010 35 1 1.9328 3.8574 -0.0020 36 1 4.6002 5.3704 -0.0007 37 1 4.1312 7.7643 -0.0020 38 1 1.3542 8.2898 1.8706 39 1 2.7676 9.3608 2.0246 40 1 1.2188 10.0109 1.4362 41 1 0.6838 12.1986 -0.3603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491829127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -64.604082 kcal Electronic energy + Delta-G solvation = -21739.142843 eV Core-core repulsion = 18390.496918 eV Total energy + Delta-G solvation = -3348.645925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24423 -40.48472 -38.56743 -36.79056 -35.03423 -34.30739 -32.79699 -31.39750 -30.76910 -29.81272 -27.35939 -25.60795 -24.83010 -23.04301 -22.67818 -21.57979 -20.51723 -19.31689 -18.76836 -17.77448 -17.24098 -17.09191 -16.72922 -16.50973 -15.94235 -15.67028 -15.47908 -14.96660 -14.53318 -14.42865 -14.38898 -14.27864 -13.72353 -13.41000 -13.25439 -13.08268 -12.99291 -12.89105 -12.76189 -12.65660 -12.29308 -12.18082 -12.10916 -11.77353 -11.67509 -11.33561 -11.10583 -10.83916 -10.60319 -9.82128 -9.59021 -8.88692 -8.17905 -6.35876 -0.40572 0.46194 1.05250 1.44832 1.45329 1.58204 2.20966 2.35864 2.43943 2.67710 2.91366 3.12497 3.69181 3.78488 3.97148 4.03675 4.12966 4.19603 4.27417 4.33188 4.39577 4.48752 4.57255 4.73827 4.87059 4.90542 4.90687 4.97996 5.01866 5.07843 5.20451 5.26488 5.39294 5.48874 5.53581 5.60261 5.61863 5.69317 5.84397 5.92468 6.08562 6.43681 6.72105 6.98092 7.31718 7.55982 8.89106 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.002943 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.897520 B = 9510.966719 C =10418.567425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.135 3.865 5 C -0.216 4.216 6 C -0.063 4.063 7 C -0.161 4.161 8 C -0.068 4.068 9 C -0.132 4.132 10 C -0.012 4.012 11 C -0.213 4.213 12 C 0.525 3.475 13 O -0.613 6.613 14 N -0.698 5.698 15 C 0.268 3.732 16 H -0.004 1.004 17 C -0.133 4.133 18 C -0.546 4.546 19 H 0.075 0.925 20 C 0.011 3.989 21 N -0.919 5.919 22 Si 0.977 3.023 23 H -0.258 1.258 24 H -0.284 1.284 25 H -0.277 1.277 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.407 0.593 38 H 0.009 0.991 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 -25.486 0.997 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.089 3.911 5 C -0.235 4.235 6 C -0.081 4.081 7 C -0.179 4.179 8 C -0.086 4.086 9 C -0.132 4.132 10 C -0.032 4.032 11 C -0.233 4.233 12 C 0.316 3.684 13 O -0.498 6.498 14 N -0.346 5.346 15 C 0.164 3.836 16 H 0.014 0.986 17 C -0.192 4.192 18 C -0.585 4.585 19 H 0.093 0.907 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.801 3.199 23 H -0.182 1.182 24 H -0.210 1.210 25 H -0.203 1.203 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.166 0.834 35 H 0.124 0.876 36 H 0.180 0.820 37 H 0.242 0.758 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.974 -25.275 1.013 27.191 hybrid contribution -0.043 0.980 -0.280 1.020 sum 9.931 -24.295 0.733 26.257 Atomic orbital electron populations 1.21842 0.92294 1.04230 1.02758 1.23114 0.96457 0.80419 1.02817 1.86069 1.19288 1.31880 1.87885 1.19435 0.82865 0.93853 0.94972 1.21486 0.94756 0.98091 1.09125 1.21531 0.94157 0.98518 0.93922 1.21382 1.01331 0.91845 1.03305 1.21574 0.90497 1.01192 0.95302 1.18477 0.93976 0.89895 1.10902 1.22074 0.99062 0.91544 0.90558 1.22910 1.00660 0.90961 1.08801 1.19022 0.88188 0.84959 0.76245 1.90730 1.17758 1.87297 1.54010 1.46166 1.10992 1.05478 1.71929 1.18377 0.89337 0.82545 0.93303 0.98637 1.21897 1.00130 0.99723 0.97456 1.21582 1.00740 0.94739 1.41390 0.90654 1.25868 0.95618 1.01863 0.95481 1.70078 1.12877 1.25842 1.46972 0.85226 0.78831 0.78112 0.77727 1.18192 1.20970 1.20282 0.87521 0.92526 0.92569 0.90344 0.90309 0.82926 0.82264 0.82686 0.83395 0.87560 0.81979 0.75753 0.97223 0.93856 0.91338 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.71 5.46 71.98 0.39 1.11 16 3 O -0.34 -8.50 9.32 -90.04 -0.84 -9.34 16 4 C 0.13 3.20 6.70 22.88 0.15 3.35 16 5 C -0.22 -3.52 9.03 22.33 0.20 -3.32 16 6 C -0.06 -0.82 10.03 22.32 0.22 -0.60 16 7 C -0.16 -2.32 10.02 22.24 0.22 -2.10 16 8 C -0.07 -1.34 9.41 22.56 0.21 -1.12 16 9 C -0.13 -3.43 5.88 -20.07 -0.12 -3.55 16 10 C -0.01 -0.40 9.21 23.81 0.22 -0.18 16 11 C -0.21 -7.06 9.41 23.61 0.22 -6.84 16 12 C 0.53 23.64 7.70 86.32 0.66 24.30 16 13 O -0.61 -33.65 15.89 -4.41 -0.07 -33.72 16 14 N -0.70 -31.39 5.06 -450.49 -2.28 -33.67 16 15 C 0.27 14.74 2.56 44.25 0.11 14.85 16 16 H 0.00 -0.28 7.57 -2.39 -0.02 -0.30 16 17 C -0.13 -7.15 9.26 71.98 0.67 -6.48 16 18 C -0.55 -29.95 8.73 25.60 0.22 -29.73 16 19 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 20 C 0.01 0.63 5.30 84.65 0.45 1.08 16 21 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 22 Si 0.98 42.84 29.54 68.60 2.03 44.87 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 31 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 32 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.15 2.40 6.17 -2.91 -0.02 2.39 16 35 H 0.11 4.11 7.10 -2.91 -0.02 4.09 16 36 H 0.16 3.92 6.07 -2.91 -0.02 3.90 16 37 H 0.41 15.10 8.52 -92.71 -0.79 14.31 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 41 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -76.22 347.44 3.92 -72.30 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.25 Total: 24.31 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.59 Total: -10.72 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.04 Total: -87.70 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.91 Total: -43.06 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -76.22 3.92 -72.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491829127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.696 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds