Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47234 * 2 1 4 4 C 1.46496 * 119.99875 * 270.00108 * 3 2 1 5 5 C 1.50696 * 109.47289 * 269.99580 * 4 3 2 6 6 H 1.07994 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99827 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99721 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00343 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47054 * 90.00100 * 9 7 5 11 11 H 1.48495 * 109.47025 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.47087 * 329.99963 * 9 7 5 13 13 C 1.34778 * 119.99547 * 89.99865 * 3 2 1 14 14 O 1.21717 * 119.99692 * 179.97438 * 13 3 2 15 15 C 1.46256 * 120.00132 * 0.02562 * 13 3 2 16 16 C 1.34978 * 119.99611 * 187.32615 * 15 13 3 17 17 C 1.47000 * 120.00120 * 10.16475 * 16 15 13 18 18 C 1.39969 * 120.11480 * 43.99267 * 17 16 15 19 19 C 1.37661 * 119.88479 * 180.23443 * 18 17 16 20 20 C 1.39020 * 120.11279 * 359.48806 * 19 18 17 21 21 O 1.35739 * 119.88489 * 180.25639 * 20 19 18 22 22 C 1.42895 * 116.99913 * 180.02562 * 21 20 19 23 23 C 1.39017 * 120.22821 * 0.28579 * 20 19 18 24 24 C 1.37662 * 120.11796 * 359.97050 * 23 20 19 25 25 H 1.08997 * 109.46808 * 299.99945 * 1 2 3 26 26 H 1.08999 * 109.47302 * 59.99909 * 1 2 3 27 27 H 1.09005 * 109.46777 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47282 * 240.00402 * 2 1 3 29 29 H 1.08999 * 109.47235 * 120.00644 * 2 1 3 30 30 H 1.09004 * 109.47487 * 30.00316 * 4 3 2 31 31 H 1.09001 * 109.46753 * 149.99909 * 4 3 2 32 32 H 0.97003 * 119.99869 * 180.02562 * 8 7 5 33 33 H 1.08001 * 119.99816 * 7.32739 * 15 13 3 34 34 H 1.08001 * 119.99482 * 190.16178 * 16 15 13 35 35 H 1.08004 * 120.05559 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.94275 * 179.77044 * 19 18 17 37 37 H 1.09000 * 109.47253 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.47474 * 300.00101 * 22 21 20 39 39 H 1.09006 * 109.46966 * 60.00300 * 22 21 20 40 40 H 1.08000 * 119.94112 * 179.97438 * 23 20 19 41 41 H 1.07995 * 120.06180 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8774 8 7 5.3913 2.1835 -3.2573 9 14 3.0133 3.4372 -3.9280 10 1 3.1171 4.8571 -3.5058 11 1 3.4064 3.3150 -5.3548 12 1 1.6135 2.9714 -3.7586 13 6 2.2430 2.0165 1.1673 14 8 2.6492 3.1639 1.1673 15 6 1.9997 1.3268 2.4338 16 6 2.0813 2.0050 3.5980 17 6 2.1918 3.4708 3.5886 18 6 1.3833 4.2305 2.7353 19 6 1.4941 5.6027 2.7269 20 6 2.3996 6.2344 3.5716 21 8 2.5014 7.5880 3.5633 22 6 3.4520 8.1726 4.4557 23 6 3.2016 5.4848 4.4245 24 6 3.1023 4.1118 4.4369 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6878 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 5.7175 2.5746 -4.0829 33 1 1.7547 0.2749 2.4375 34 1 2.0654 1.4706 4.5364 35 1 0.6767 3.7408 2.0815 36 1 0.8734 6.1896 2.0661 37 1 3.4322 9.2571 4.3482 38 1 3.2001 7.9042 5.4816 39 1 4.4492 7.8024 4.2177 40 1 3.9037 5.9804 5.0785 41 1 3.7261 3.5302 5.0995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492203043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = -35.149753 kcal Electronic energy + Delta-G solvation = -22925.332151 eV Core-core repulsion = 19577.963462 eV Total energy + Delta-G solvation = -3347.368690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25591 -40.55588 -38.47013 -36.84224 -34.93857 -34.27262 -32.08452 -31.78341 -30.44611 -29.29706 -28.09136 -25.40625 -24.29618 -23.55566 -23.41589 -21.60361 -19.34936 -19.17398 -18.98038 -18.29594 -17.23119 -16.97778 -16.63520 -16.35359 -16.12014 -15.50571 -15.19371 -14.88377 -14.67206 -14.55766 -14.46114 -14.24635 -13.95675 -13.70425 -13.43514 -13.28312 -13.17440 -12.80548 -12.61003 -12.52119 -12.33362 -12.12704 -12.03830 -11.80310 -11.75939 -11.68950 -10.84849 -10.55949 -10.48621 -9.80548 -9.23365 -8.64718 -8.35649 -6.39669 -0.10158 0.54820 1.01552 1.28888 1.33391 1.41365 2.28464 2.38261 2.41134 2.58988 2.93593 2.99001 3.83099 3.90396 3.93346 3.99161 4.17418 4.30463 4.37846 4.42251 4.44609 4.48842 4.60760 4.68009 4.73856 4.74967 4.80324 4.90884 5.02037 5.02969 5.09400 5.13477 5.34305 5.37704 5.40711 5.47714 5.52633 5.69974 5.78625 5.88508 6.25494 6.49076 6.61519 6.82050 7.21697 7.54873 8.81579 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.005218 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.795331 B = 5364.279721 C = 6668.092094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.598 5.598 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.239 1.239 13 C 0.517 3.483 14 O -0.575 6.575 15 C -0.219 4.219 16 C -0.013 4.013 17 C -0.123 4.123 18 C -0.003 4.003 19 C -0.192 4.192 20 C 0.122 3.878 21 O -0.341 6.341 22 C 0.019 3.981 23 C -0.227 4.227 24 C -0.065 4.065 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.166 0.834 34 H 0.180 0.820 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.151 0.849 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 0.950 18.228 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.328 5.328 4 C 0.106 3.894 5 C -0.570 4.570 6 H 0.045 0.955 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.162 1.162 13 C 0.309 3.691 14 O -0.458 6.458 15 C -0.239 4.239 16 C -0.032 4.032 17 C -0.124 4.124 18 C -0.022 4.022 19 C -0.210 4.210 20 C 0.077 3.923 21 O -0.255 6.255 22 C -0.075 4.075 23 C -0.246 4.246 24 C -0.083 4.083 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.184 0.816 34 H 0.197 0.803 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.169 0.831 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.588 1.690 17.929 20.890 hybrid contribution 0.488 0.568 -1.135 1.360 sum -10.100 2.258 16.793 19.726 Atomic orbital electron populations 1.22146 0.94036 1.03521 1.01935 1.21782 0.95533 0.81364 1.03750 1.48048 1.63688 1.15142 1.05890 1.19211 0.94548 0.92879 0.82787 1.21565 0.97104 1.31792 1.06528 0.95454 1.25819 0.96650 0.97183 0.98946 1.70053 1.17383 1.46690 1.24530 0.85753 0.80550 0.78935 0.77943 1.20514 1.19788 1.16228 1.19200 0.77972 0.86277 0.85634 1.90830 1.47819 1.19553 1.87566 1.23242 1.07800 1.02173 0.90710 1.22691 0.90387 0.91367 0.98738 1.19117 0.99798 0.94199 0.99261 1.20856 0.96567 0.92305 0.92454 1.20342 1.03017 0.94836 1.02846 1.19288 0.95126 0.82652 0.95266 1.85981 1.59868 1.17737 1.61893 1.23339 0.91158 0.99888 0.93141 1.21292 1.04019 0.95210 1.04054 1.21307 0.96120 0.93865 0.96967 0.91958 0.93865 0.88791 0.91426 0.88306 0.93843 0.96651 0.92323 0.81635 0.80293 0.87446 0.86342 0.86310 0.90928 0.92462 0.83117 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.24 71.98 0.74 -2.86 16 2 C 0.10 2.92 5.89 86.38 0.51 3.43 16 3 N -0.60 -24.72 2.46 -831.36 -2.04 -26.77 16 4 C 0.23 11.48 4.23 85.63 0.36 11.84 16 5 C -0.53 -32.18 9.94 25.60 0.25 -31.93 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.72 5.47 84.65 0.46 1.18 16 8 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 9 Si 0.95 46.06 27.47 68.60 1.88 47.94 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 13 C 0.52 21.11 6.63 86.33 0.57 21.69 16 14 O -0.58 -28.49 11.69 -4.40 -0.05 -28.55 16 15 C -0.22 -6.11 9.15 23.61 0.22 -5.89 16 16 C -0.01 -0.30 9.80 23.82 0.23 -0.07 16 17 C -0.12 -3.77 4.55 -20.14 -0.09 -3.86 16 18 C 0.00 -0.12 6.57 22.55 0.15 0.03 16 19 C -0.19 -6.80 9.97 22.32 0.22 -6.58 16 20 C 0.12 3.93 6.70 22.64 0.15 4.08 16 21 O -0.34 -10.02 10.49 -90.64 -0.95 -10.97 16 22 C 0.02 0.35 9.81 113.37 1.11 1.46 16 23 C -0.23 -6.23 9.01 22.32 0.20 -6.03 16 24 C -0.06 -1.74 9.79 22.56 0.22 -1.52 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 29 H 0.10 2.34 6.01 -2.39 -0.01 2.33 16 30 H 0.04 2.03 7.13 -2.39 -0.02 2.02 16 31 H 0.02 0.84 6.85 -2.39 -0.02 0.82 16 32 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 33 H 0.17 3.28 6.14 -2.91 -0.02 3.26 16 34 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.11 3.85 7.00 -2.91 -0.02 3.83 16 36 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 39 H 0.06 1.03 7.65 -2.38 -0.02 1.01 16 40 H 0.15 3.11 6.27 -2.91 -0.02 3.09 16 41 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -82.94 340.43 5.41 -77.52 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.96 Total: 16.83 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.31 Total: -15.03 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -1.74 Total: -87.75 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.00 Total: -39.51 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -82.94 5.41 -77.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492203043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.373 kcal (2) G-P(sol) polarization free energy of solvation -82.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds