Wall clock time and date at job start Tue Mar 31 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46921 * 2 1 4 4 C 1.46504 * 120.00271 * 269.99859 * 3 2 1 5 5 C 1.50697 * 109.47338 * 270.00352 * 4 3 2 6 6 H 1.08004 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00191 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00212 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47166 * 90.00477 * 9 7 5 11 11 H 1.48502 * 109.46887 * 209.99965 * 9 7 5 12 12 H 1.48501 * 109.47027 * 330.00019 * 9 7 5 13 13 C 1.34777 * 119.99875 * 90.00602 * 3 2 1 14 14 O 1.21703 * 120.00024 * 179.97438 * 13 3 2 15 15 C 1.46426 * 120.00047 * 0.26781 * 13 3 2 16 16 C 1.34811 * 119.99827 * 179.72509 * 15 13 3 17 17 C 1.47219 * 119.99690 * 180.02562 * 16 15 13 18 18 C 1.39851 * 120.16972 * 0.02562 * 17 16 15 19 19 C 1.37866 * 119.82546 * 180.02562 * 18 17 16 20 20 C 1.38420 * 120.17101 * 359.97438 * 19 18 17 21 21 C 1.38380 * 120.34544 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.91428 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47028 * 90.00195 * 22 21 20 24 24 C 1.37912 * 120.16950 * 359.72303 * 21 20 19 25 25 H 1.09001 * 109.47466 * 59.99921 * 1 2 3 26 26 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47071 * 299.99814 * 1 2 3 28 28 H 1.08997 * 109.46785 * 240.00055 * 2 1 3 29 29 H 1.09001 * 109.47466 * 120.00078 * 2 1 3 30 30 H 1.08999 * 109.46626 * 30.00758 * 4 3 2 31 31 H 1.08996 * 109.47068 * 150.00171 * 4 3 2 32 32 H 0.97004 * 120.00113 * 179.97438 * 8 7 5 33 33 H 1.08002 * 120.00178 * 359.73207 * 15 13 3 34 34 H 1.07991 * 120.00518 * 0.02562 * 16 15 13 35 35 H 1.08000 * 120.08742 * 359.97438 * 18 17 16 36 36 H 1.08009 * 119.91342 * 180.02562 * 19 18 17 37 37 H 1.08009 * 119.82577 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47346 * 209.99885 * 22 21 20 39 39 H 1.09001 * 109.47158 * 330.00593 * 22 21 20 40 40 H 0.96694 * 114.00358 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.08690 * 180.27491 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9130 2.0956 -3.4176 10 1 5.9758 0.8746 -4.2603 11 1 6.3921 3.2628 -4.2008 12 1 6.7734 1.9158 -2.2206 13 6 2.2430 2.0165 1.1672 14 8 2.6490 3.1638 1.1672 15 6 2.0047 1.3242 2.4353 16 6 2.2347 1.9578 3.6027 17 6 1.9957 1.2616 4.8777 18 6 1.5304 -0.0573 4.8818 19 6 1.3085 -0.7024 6.0798 20 6 1.5454 -0.0482 7.2765 21 6 2.0057 1.2567 7.2807 22 6 2.2609 1.9594 8.5891 23 8 3.6122 1.7333 8.9956 24 6 2.2375 1.9137 6.0905 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1410 -1.1383 32 1 3.6750 3.5164 -4.4439 33 1 1.6447 0.3059 2.4353 34 1 2.5944 2.9761 3.6028 35 1 1.3448 -0.5688 3.9489 36 1 0.9496 -1.7211 6.0846 37 1 1.3700 -0.5591 8.2118 38 1 2.0928 3.0293 8.4659 39 1 1.5831 1.5702 9.3489 40 1 3.8476 2.1577 9.8319 41 1 2.6010 2.9307 6.0953 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492204235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:49 Heat of formation + Delta-G solvation = -46.361176 kcal Electronic energy + Delta-G solvation = -21830.088697 eV Core-core repulsion = 18482.233844 eV Total energy + Delta-G solvation = -3347.854854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72904 -38.92778 -36.97744 -35.31591 -34.00785 -32.73793 -31.71958 -30.15671 -29.83538 -27.17560 -26.22519 -24.30688 -22.98854 -22.36963 -22.11897 -19.79731 -17.96711 -17.76951 -17.28934 -16.44782 -16.29883 -15.79549 -15.34695 -15.14178 -14.36433 -14.22030 -14.01690 -13.83521 -13.52397 -13.32869 -13.13957 -12.93530 -12.55058 -12.29113 -12.00429 -11.98131 -11.59202 -11.31879 -11.18402 -11.01825 -10.88175 -10.71387 -10.47367 -10.42508 -10.23949 -10.10326 -9.60620 -9.08931 -8.95808 -8.41077 -8.24871 -7.60589 -6.01745 -4.06386 0.60716 1.14393 2.13645 3.32132 3.38705 3.43728 3.54264 3.92976 4.09156 4.17910 4.46842 4.55273 4.64365 4.72295 4.85873 4.95422 5.05178 5.17794 5.24372 5.28244 5.32723 5.40655 5.51292 5.65889 5.75616 5.78890 5.85319 6.05269 6.10041 6.22594 6.25740 6.31869 6.50201 6.51597 6.68449 6.77231 7.13130 7.26197 7.47755 7.58102 7.95055 8.26301 8.45561 8.92903 9.12393 9.58658 11.06274 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003105 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.080009 B = 9015.178754 C = 9694.750765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.533 3.467 14 O -0.544 6.544 15 C -0.184 4.184 16 C -0.054 4.054 17 C -0.059 4.059 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.099 4.099 21 C -0.098 4.098 22 C 0.118 3.882 23 O -0.567 6.567 24 C -0.081 4.081 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.379 0.621 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 -7.776 22.503 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.321 5.321 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.321 3.679 14 O -0.424 6.424 15 C -0.204 4.204 16 C -0.074 4.074 17 C -0.060 4.060 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.117 4.117 21 C -0.098 4.098 22 C 0.040 3.960 23 O -0.373 6.373 24 C -0.099 4.099 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.227 0.773 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.756 -7.407 21.713 23.915 hybrid contribution 0.885 0.033 0.044 0.887 sum -5.871 -7.374 21.757 23.711 Atomic orbital electron populations 1.22240 0.96738 1.01376 1.02460 1.21450 0.93528 0.84244 1.02646 1.48168 1.63007 1.13178 1.07758 1.19286 0.96292 0.93707 0.78096 1.21446 0.96914 1.31851 1.06194 0.92441 1.24935 0.97873 0.94921 0.96403 1.69938 1.35696 1.33493 1.14337 0.86494 0.84693 0.77647 0.78590 1.20652 1.21088 1.19863 1.18150 0.79117 0.86482 0.84125 1.90776 1.46221 1.17930 1.87483 1.23357 1.03137 1.00652 0.93270 1.22270 0.95268 0.99758 0.90107 1.19095 0.99831 0.94029 0.92998 1.21494 0.97866 0.93982 0.98528 1.21062 1.00783 1.00071 0.92154 1.21110 0.98591 0.93741 0.98233 1.19512 1.01296 0.95002 0.94016 1.20977 0.83675 0.98268 0.93040 1.86593 1.28578 1.77807 1.44311 1.21259 0.97619 1.00066 0.90943 0.92029 0.92202 0.92929 0.89923 0.91651 0.94952 0.93817 0.92743 0.85640 0.84708 0.85323 0.85610 0.86068 0.92595 0.92765 0.77343 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.73 5.84 -4.04 -0.02 1.70 16 3 N -0.59 -12.87 2.46 -176.71 -0.43 -13.31 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.53 -15.19 9.39 -34.45 -0.32 -15.51 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 13 C 0.53 11.62 7.61 -12.96 -0.10 11.52 16 14 O -0.54 -14.24 15.81 5.19 0.08 -14.16 16 15 C -0.18 -2.99 8.61 -37.50 -0.32 -3.32 16 16 C -0.05 -0.82 9.46 -37.15 -0.35 -1.17 16 17 C -0.06 -0.76 5.87 -105.06 -0.62 -1.38 16 18 C -0.10 -1.13 9.41 -39.11 -0.37 -1.49 16 19 C -0.12 -1.18 10.03 -39.65 -0.40 -1.58 16 20 C -0.10 -0.95 9.69 -39.46 -0.38 -1.33 16 21 C -0.10 -1.03 5.50 -104.69 -0.58 -1.60 16 22 C 0.12 0.93 7.16 36.01 0.26 1.18 16 23 O -0.57 -5.01 13.64 -35.23 -0.48 -5.49 16 24 C -0.08 -0.95 9.44 -39.11 -0.37 -1.32 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 0.90 6.08 -51.93 -0.32 0.58 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.13 1.66 4.22 -52.49 -0.22 1.43 16 34 H 0.14 2.16 7.52 -52.49 -0.39 1.77 16 35 H 0.13 1.26 6.17 -52.49 -0.32 0.93 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 40 H 0.38 1.40 9.12 45.56 0.42 1.82 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -35.89 352.49 -8.11 -43.99 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.99 Total: 0.74 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.32 Total: -8.05 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.30 Total: -39.54 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.40 Total: -19.65 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.89 -8.11 -43.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492204235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.368 kcal (2) G-P(sol) polarization free energy of solvation -35.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds