Wall clock time and date at job start Tue Mar 31 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46921 * 2 1 4 4 C 1.46504 * 120.00271 * 269.99859 * 3 2 1 5 5 C 1.50697 * 109.47338 * 270.00352 * 4 3 2 6 6 H 1.08004 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00191 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00212 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47166 * 90.00477 * 9 7 5 11 11 H 1.48502 * 109.46887 * 209.99965 * 9 7 5 12 12 H 1.48501 * 109.47027 * 330.00019 * 9 7 5 13 13 C 1.34777 * 119.99875 * 90.00602 * 3 2 1 14 14 O 1.21703 * 120.00024 * 179.97438 * 13 3 2 15 15 C 1.46426 * 120.00047 * 0.26781 * 13 3 2 16 16 C 1.34811 * 119.99827 * 179.72509 * 15 13 3 17 17 C 1.47219 * 119.99690 * 180.02562 * 16 15 13 18 18 C 1.39851 * 120.16972 * 0.02562 * 17 16 15 19 19 C 1.37866 * 119.82546 * 180.02562 * 18 17 16 20 20 C 1.38420 * 120.17101 * 359.97438 * 19 18 17 21 21 C 1.38380 * 120.34544 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.91428 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47028 * 90.00195 * 22 21 20 24 24 C 1.37912 * 120.16950 * 359.72303 * 21 20 19 25 25 H 1.09001 * 109.47466 * 59.99921 * 1 2 3 26 26 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47071 * 299.99814 * 1 2 3 28 28 H 1.08997 * 109.46785 * 240.00055 * 2 1 3 29 29 H 1.09001 * 109.47466 * 120.00078 * 2 1 3 30 30 H 1.08999 * 109.46626 * 30.00758 * 4 3 2 31 31 H 1.08996 * 109.47068 * 150.00171 * 4 3 2 32 32 H 0.97004 * 120.00113 * 179.97438 * 8 7 5 33 33 H 1.08002 * 120.00178 * 359.73207 * 15 13 3 34 34 H 1.07991 * 120.00518 * 0.02562 * 16 15 13 35 35 H 1.08000 * 120.08742 * 359.97438 * 18 17 16 36 36 H 1.08009 * 119.91342 * 180.02562 * 19 18 17 37 37 H 1.08009 * 119.82577 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47346 * 209.99885 * 22 21 20 39 39 H 1.09001 * 109.47158 * 330.00593 * 22 21 20 40 40 H 0.96694 * 114.00358 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.08690 * 180.27491 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9130 2.0956 -3.4176 10 1 5.9758 0.8746 -4.2603 11 1 6.3921 3.2628 -4.2008 12 1 6.7734 1.9158 -2.2206 13 6 2.2430 2.0165 1.1672 14 8 2.6490 3.1638 1.1672 15 6 2.0047 1.3242 2.4353 16 6 2.2347 1.9578 3.6027 17 6 1.9957 1.2616 4.8777 18 6 1.5304 -0.0573 4.8818 19 6 1.3085 -0.7024 6.0798 20 6 1.5454 -0.0482 7.2765 21 6 2.0057 1.2567 7.2807 22 6 2.2609 1.9594 8.5891 23 8 3.6122 1.7333 8.9956 24 6 2.2375 1.9137 6.0905 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1410 -1.1383 32 1 3.6750 3.5164 -4.4439 33 1 1.6447 0.3059 2.4353 34 1 2.5944 2.9761 3.6028 35 1 1.3448 -0.5688 3.9489 36 1 0.9496 -1.7211 6.0846 37 1 1.3700 -0.5591 8.2118 38 1 2.0928 3.0293 8.4659 39 1 1.5831 1.5702 9.3489 40 1 3.8476 2.1577 9.8319 41 1 2.6010 2.9307 6.0953 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492204235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:48 Heat of formation + Delta-G solvation = -70.991120 kcal Electronic energy + Delta-G solvation = -21831.156732 eV Core-core repulsion = 18482.233844 eV Total energy + Delta-G solvation = -3348.922888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87564 -40.26619 -37.63521 -37.01481 -35.22774 -34.76370 -32.47298 -31.69519 -30.96902 -29.05836 -26.90186 -25.91866 -24.51402 -23.68974 -22.99698 -21.02890 -19.35948 -18.73126 -18.42420 -18.35072 -17.38709 -17.24427 -16.52504 -16.21234 -15.99682 -15.80883 -14.99986 -14.78898 -14.64616 -14.47660 -14.35132 -14.20952 -13.92070 -13.58284 -13.39136 -13.27277 -13.12134 -12.88062 -12.66297 -12.46719 -12.21600 -12.15014 -11.93444 -11.78290 -11.73992 -11.29881 -10.97368 -10.71092 -10.65603 -9.86876 -9.53934 -9.17303 -8.23703 -6.39186 -0.43001 0.36142 1.03377 1.35037 1.38404 1.49089 2.26233 2.41855 2.44720 2.84844 3.05171 3.48536 3.59351 3.82669 3.98891 4.03244 4.11912 4.15740 4.28594 4.36334 4.41852 4.42898 4.54849 4.61815 4.66370 4.88152 4.95352 4.98216 4.98780 5.03311 5.15222 5.17058 5.32892 5.39315 5.49500 5.56261 5.58868 5.64611 5.85263 5.98944 6.04697 6.68182 6.77656 6.91926 7.25809 7.44769 8.83301 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003105 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.080009 B = 9015.178754 C = 9694.750765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.274 1.274 13 C 0.523 3.477 14 O -0.607 6.607 15 C -0.200 4.200 16 C -0.028 4.028 17 C -0.087 4.087 18 C -0.102 4.102 19 C -0.123 4.123 20 C -0.093 4.093 21 C -0.112 4.112 22 C 0.116 3.884 23 O -0.592 6.592 24 C -0.092 4.092 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.025 0.975 31 H -0.005 1.005 32 H 0.268 0.732 33 H 0.163 0.837 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.400 0.600 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -10.709 24.899 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.326 5.326 4 C 0.139 3.861 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.199 1.199 13 C 0.315 3.685 14 O -0.491 6.491 15 C -0.220 4.220 16 C -0.048 4.048 17 C -0.087 4.087 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.112 4.112 22 C 0.039 3.961 23 O -0.401 6.401 24 C -0.111 4.111 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.043 0.957 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.181 0.819 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.250 0.750 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.908 -10.386 24.131 27.165 hybrid contribution 0.885 0.957 -0.507 1.399 sum -6.023 -9.428 23.624 26.139 Atomic orbital electron populations 1.22168 0.94367 1.03677 1.01666 1.21815 0.95463 0.81193 1.03980 1.48189 1.63115 1.15163 1.06151 1.18733 0.95461 0.91518 0.80345 1.21702 0.97827 1.32174 1.06587 0.92993 1.25883 1.02578 0.94372 0.96351 1.70058 1.37848 1.34132 1.14795 0.85385 0.78735 0.78327 0.78175 1.18559 1.20477 1.19917 1.19044 0.77742 0.85997 0.85734 1.90728 1.49216 1.20731 1.88451 1.23060 1.06541 1.02085 0.90322 1.22350 0.92330 0.98794 0.91327 1.19009 1.02638 0.95234 0.91799 1.21737 0.97035 0.93115 1.00061 1.21446 0.99849 1.01355 0.91403 1.21548 0.96678 0.93318 0.99557 1.19887 1.01017 0.95708 0.94553 1.21056 0.83839 0.98683 0.92479 1.86522 1.29132 1.78447 1.46000 1.21421 0.97796 1.00367 0.91479 0.94306 0.88218 0.92289 0.90730 0.88105 0.95718 0.98638 0.92332 0.81936 0.86809 0.83820 0.82531 0.83396 0.91856 0.90279 0.74973 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.98 0.74 -3.40 16 2 C 0.10 3.11 5.84 86.38 0.50 3.61 16 3 N -0.60 -26.97 2.46 -831.19 -2.04 -29.01 16 4 C 0.26 14.76 5.16 85.63 0.44 15.21 16 5 C -0.54 -32.67 9.39 25.60 0.24 -32.43 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.63 13.29 21.44 0.28 -57.35 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.52 23.84 7.61 86.37 0.66 24.49 16 14 O -0.61 -34.07 15.81 -4.36 -0.07 -34.14 16 15 C -0.20 -6.48 8.61 23.62 0.20 -6.28 16 16 C -0.03 -0.85 9.46 23.84 0.23 -0.63 16 17 C -0.09 -2.12 5.87 -20.15 -0.12 -2.24 16 18 C -0.10 -1.97 9.41 22.57 0.21 -1.75 16 19 C -0.12 -1.87 10.03 22.22 0.22 -1.65 16 20 C -0.09 -1.44 9.69 22.35 0.22 -1.23 16 21 C -0.11 -2.07 5.50 -19.91 -0.11 -2.18 16 22 C 0.12 1.54 7.16 71.24 0.51 2.05 16 23 O -0.59 -9.14 13.64 -148.98 -2.03 -11.18 16 24 C -0.09 -2.09 9.44 22.57 0.21 -1.88 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 29 H 0.10 2.50 6.08 -2.39 -0.01 2.48 16 30 H 0.02 1.41 8.07 -2.39 -0.02 1.39 16 31 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.16 3.88 4.22 -2.91 -0.01 3.87 16 34 H 0.11 3.91 7.52 -2.91 -0.02 3.89 16 35 H 0.14 2.25 6.17 -2.91 -0.02 2.23 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 39 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 40 H 0.40 2.08 9.12 -74.06 -0.68 1.41 16 41 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -82.96 352.49 3.15 -79.81 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.36 Total: 11.08 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 4.62 Total: -7.42 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.76 Total: -86.36 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.10 Total: -45.32 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -82.96 3.15 -79.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492204235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.823 kcal (2) G-P(sol) polarization free energy of solvation -82.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds