Wall clock time and date at job start Tue Mar 31 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47211 * 2 1 4 4 C 1.46497 * 120.00070 * 89.99558 * 3 2 1 5 5 C 1.50706 * 109.46833 * 90.00325 * 4 3 2 6 6 H 1.07999 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99732 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00389 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47033 * 90.00069 * 9 7 5 11 11 H 1.48498 * 109.47276 * 209.99708 * 9 7 5 12 12 H 1.48504 * 109.47128 * 330.00278 * 9 7 5 13 13 C 1.34779 * 119.99666 * 269.72302 * 3 2 1 14 14 O 1.21717 * 119.99632 * 179.97438 * 13 3 2 15 15 C 1.46239 * 120.00131 * 0.02562 * 13 3 2 16 16 C 1.35002 * 120.00184 * 186.58332 * 15 13 3 17 17 C 1.46943 * 119.99457 * 10.06015 * 16 15 13 18 18 C 1.39924 * 120.21620 * 48.58644 * 17 16 15 19 19 C 1.37763 * 119.88214 * 179.69404 * 18 17 16 20 20 C 1.38572 * 120.31719 * 0.58121 * 19 18 17 21 21 C 1.38122 * 120.43326 * 359.71348 * 20 19 18 22 22 C 1.38607 * 120.11282 * 359.97438 * 21 20 19 23 23 O 1.35692 * 120.15897 * 179.97438 * 22 21 20 24 24 C 1.42900 * 117.00518 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47291 * 300.00097 * 1 2 3 27 27 H 1.09006 * 109.47087 * 60.00413 * 1 2 3 28 28 H 1.08999 * 109.47291 * 239.99903 * 2 1 3 29 29 H 1.08997 * 109.47183 * 119.99807 * 2 1 3 30 30 H 1.09002 * 109.47242 * 209.99933 * 4 3 2 31 31 H 1.08994 * 109.47133 * 330.00515 * 4 3 2 32 32 H 0.96997 * 120.00218 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.00339 * 6.58105 * 15 13 3 34 34 H 1.07995 * 120.00430 * 190.05416 * 16 15 13 35 35 H 1.07994 * 120.06087 * 359.97000 * 18 17 16 36 36 H 1.07998 * 119.84146 * 180.26860 * 19 18 17 37 37 H 1.07992 * 119.77929 * 179.73740 * 20 19 18 38 38 H 1.08005 * 119.94731 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46860 * 59.99249 * 24 23 22 40 40 H 1.08996 * 109.47708 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46321 * 300.00084 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7037 6 1 4.3426 1.2303 1.0962 7 6 4.1493 2.3906 2.8774 8 7 3.3496 3.1275 3.6170 9 14 5.9133 2.0965 3.4170 10 1 6.7856 3.1612 2.8594 11 1 5.9881 2.1217 4.8999 12 1 6.3688 0.7730 2.9207 13 6 2.2483 2.0146 -1.1672 14 8 2.6536 3.1624 -1.1672 15 6 2.0098 1.3234 -2.4337 16 6 2.3642 1.9068 -3.5984 17 6 3.1838 3.1264 -3.5895 18 6 4.3440 3.1895 -2.8100 19 6 5.1107 4.3341 -2.8117 20 6 4.7320 5.4285 -3.5728 21 6 3.5860 5.3827 -4.3423 22 6 2.8048 4.2378 -4.3589 23 8 1.6784 4.1920 -5.1142 24 6 1.3560 5.3611 -5.8700 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0955 3.1411 1.1383 31 1 1.5817 1.6878 2.0283 32 1 3.6758 3.5186 4.4425 33 1 1.5501 0.3460 -2.4373 34 1 2.0455 1.4772 -4.5365 35 1 4.6405 2.3409 -2.2115 36 1 6.0084 4.3805 -2.2132 37 1 5.3372 6.3229 -3.5644 38 1 3.2984 6.2401 -4.9328 39 1 2.1664 5.5791 -6.5655 40 1 0.4350 5.1909 -6.4275 41 1 1.2209 6.2051 -5.1935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492220457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:06 Heat of formation + Delta-G solvation = -18.037955 kcal Electronic energy + Delta-G solvation = -23178.508639 eV Core-core repulsion = 19831.881972 eV Total energy + Delta-G solvation = -3346.626667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01864 -38.91174 -37.05954 -35.23445 -33.50108 -32.67859 -30.01473 -29.83957 -29.55959 -27.32086 -26.87078 -24.07363 -22.91194 -22.36015 -21.70437 -20.29469 -18.19350 -17.48438 -16.81393 -16.33246 -15.80460 -15.61975 -15.56721 -14.81292 -14.35327 -14.12048 -14.00352 -13.57953 -13.36810 -13.22670 -12.84008 -12.50814 -12.33617 -12.06796 -11.91246 -11.86857 -11.54333 -11.17671 -11.14883 -10.95994 -10.84360 -10.68479 -10.61037 -10.44885 -10.09006 -9.61542 -9.49275 -8.87166 -8.39548 -8.03670 -7.60814 -7.48348 -6.00056 -4.04602 1.20026 1.87075 2.23059 3.32684 3.38615 3.39952 3.40821 4.09546 4.14655 4.19688 4.48851 4.94293 5.02227 5.12961 5.17883 5.21466 5.33938 5.37375 5.42001 5.43495 5.59610 5.70438 5.73459 5.78753 5.84584 6.02547 6.11362 6.28253 6.31359 6.39842 6.47124 6.57225 6.70565 6.81519 6.99310 7.10966 7.20860 7.52826 7.62459 7.65222 7.97254 8.29068 8.55196 8.96051 9.23964 9.60545 11.07826 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.005331 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.051477 B = 5250.585774 C = 6481.326094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.528 3.472 14 O -0.529 6.529 15 C -0.205 4.205 16 C -0.030 4.030 17 C -0.087 4.087 18 C 0.001 3.999 19 C -0.160 4.160 20 C -0.076 4.076 21 C -0.222 4.222 22 C 0.135 3.865 23 O -0.317 6.317 24 C 0.030 3.970 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -1.494 -16.995 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.317 3.683 14 O -0.408 6.408 15 C -0.226 4.226 16 C -0.050 4.050 17 C -0.087 4.087 18 C -0.018 4.018 19 C -0.178 4.178 20 C -0.094 4.094 21 C -0.240 4.240 22 C 0.090 3.910 23 O -0.230 6.230 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.970 -0.941 -16.787 17.074 hybrid contribution 0.849 0.103 0.527 1.004 sum -2.121 -0.837 -16.261 16.420 Atomic orbital electron populations 1.22231 0.96920 1.01241 1.02374 1.21417 0.93430 0.84444 1.02492 1.48220 1.63265 1.13079 1.07824 1.19229 0.96101 0.93663 0.78239 1.21425 0.96898 1.31611 1.06129 0.92546 1.24923 0.97689 0.95021 0.96431 1.69938 1.35562 1.33540 1.14415 0.86538 0.84964 0.78587 0.77556 1.20594 1.21217 1.19946 1.18235 0.79133 0.86814 0.84113 1.90846 1.45417 1.17591 1.86922 1.23318 1.05239 1.00694 0.93358 1.22039 0.92963 0.92753 0.97252 1.18134 0.97319 0.93190 1.00087 1.20954 0.91373 0.98050 0.91384 1.20875 1.01543 0.93854 1.01516 1.20877 0.95451 0.97838 0.95218 1.20935 0.98781 0.97802 1.06524 1.18992 0.86132 0.94064 0.91837 1.85976 1.40314 1.38887 1.57834 1.22985 1.01098 0.87602 0.94872 0.92331 0.92193 0.92926 0.91603 0.90164 0.93935 0.95266 0.92812 0.85488 0.85446 0.85944 0.86179 0.86467 0.86143 0.92974 0.88644 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.11 1.77 5.80 -4.04 -0.02 1.74 16 3 N -0.59 -12.83 2.46 -176.77 -0.43 -13.26 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -14.82 9.38 -34.44 -0.32 -15.14 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.53 11.33 6.83 -13.05 -0.09 11.24 16 14 O -0.53 -13.24 11.95 5.17 0.06 -13.18 16 15 C -0.21 -3.39 9.07 -37.52 -0.34 -3.73 16 16 C -0.03 -0.47 9.33 -37.21 -0.35 -0.82 16 17 C -0.09 -1.52 4.36 -104.93 -0.46 -1.98 16 18 C 0.00 0.01 6.73 -39.12 -0.26 -0.25 16 19 C -0.16 -2.75 10.02 -39.63 -0.40 -3.15 16 20 C -0.08 -1.16 10.03 -39.50 -0.40 -1.55 16 21 C -0.22 -3.31 9.03 -39.49 -0.36 -3.67 16 22 C 0.13 2.21 6.70 -38.64 -0.26 1.95 16 23 O -0.32 -4.60 9.95 -18.78 -0.19 -4.79 16 24 C 0.03 0.29 9.81 101.05 0.99 1.29 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.13 1.68 6.32 -52.48 -0.33 1.35 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.12 2.37 7.44 -52.49 -0.39 1.98 16 36 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 39 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -33.96 344.46 -7.56 -41.52 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.90 Total: 1.66 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.01 Total: -7.92 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.30 Total: -39.39 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.13 Total: -17.97 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.96 -7.56 -41.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492220457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.478 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds