Wall clock time and date at job start Tue Mar 31 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47211 * 2 1 4 4 C 1.46497 * 120.00070 * 89.99558 * 3 2 1 5 5 C 1.50706 * 109.46833 * 90.00325 * 4 3 2 6 6 H 1.07999 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99732 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00389 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47033 * 90.00069 * 9 7 5 11 11 H 1.48498 * 109.47276 * 209.99708 * 9 7 5 12 12 H 1.48504 * 109.47128 * 330.00278 * 9 7 5 13 13 C 1.34779 * 119.99666 * 269.72302 * 3 2 1 14 14 O 1.21717 * 119.99632 * 179.97438 * 13 3 2 15 15 C 1.46239 * 120.00131 * 0.02562 * 13 3 2 16 16 C 1.35002 * 120.00184 * 186.58332 * 15 13 3 17 17 C 1.46943 * 119.99457 * 10.06015 * 16 15 13 18 18 C 1.39924 * 120.21620 * 48.58644 * 17 16 15 19 19 C 1.37763 * 119.88214 * 179.69404 * 18 17 16 20 20 C 1.38572 * 120.31719 * 0.58121 * 19 18 17 21 21 C 1.38122 * 120.43326 * 359.71348 * 20 19 18 22 22 C 1.38607 * 120.11282 * 359.97438 * 21 20 19 23 23 O 1.35692 * 120.15897 * 179.97438 * 22 21 20 24 24 C 1.42900 * 117.00518 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47291 * 300.00097 * 1 2 3 27 27 H 1.09006 * 109.47087 * 60.00413 * 1 2 3 28 28 H 1.08999 * 109.47291 * 239.99903 * 2 1 3 29 29 H 1.08997 * 109.47183 * 119.99807 * 2 1 3 30 30 H 1.09002 * 109.47242 * 209.99933 * 4 3 2 31 31 H 1.08994 * 109.47133 * 330.00515 * 4 3 2 32 32 H 0.96997 * 120.00218 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.00339 * 6.58105 * 15 13 3 34 34 H 1.07995 * 120.00430 * 190.05416 * 16 15 13 35 35 H 1.07994 * 120.06087 * 359.97000 * 18 17 16 36 36 H 1.07998 * 119.84146 * 180.26860 * 19 18 17 37 37 H 1.07992 * 119.77929 * 179.73740 * 20 19 18 38 38 H 1.08005 * 119.94731 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46860 * 59.99249 * 24 23 22 40 40 H 1.08996 * 109.47708 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46321 * 300.00084 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7037 6 1 4.3426 1.2303 1.0962 7 6 4.1493 2.3906 2.8774 8 7 3.3496 3.1275 3.6170 9 14 5.9133 2.0965 3.4170 10 1 6.7856 3.1612 2.8594 11 1 5.9881 2.1217 4.8999 12 1 6.3688 0.7730 2.9207 13 6 2.2483 2.0146 -1.1672 14 8 2.6536 3.1624 -1.1672 15 6 2.0098 1.3234 -2.4337 16 6 2.3642 1.9068 -3.5984 17 6 3.1838 3.1264 -3.5895 18 6 4.3440 3.1895 -2.8100 19 6 5.1107 4.3341 -2.8117 20 6 4.7320 5.4285 -3.5728 21 6 3.5860 5.3827 -4.3423 22 6 2.8048 4.2378 -4.3589 23 8 1.6784 4.1920 -5.1142 24 6 1.3560 5.3611 -5.8700 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0955 3.1411 1.1383 31 1 1.5817 1.6878 2.0283 32 1 3.6758 3.5186 4.4425 33 1 1.5501 0.3460 -2.4373 34 1 2.0455 1.4772 -4.5365 35 1 4.6405 2.3409 -2.2115 36 1 6.0084 4.3805 -2.2132 37 1 5.3372 6.3229 -3.5644 38 1 3.2984 6.2401 -4.9328 39 1 2.1664 5.5791 -6.5655 40 1 0.4350 5.1909 -6.4275 41 1 1.2209 6.2051 -5.1935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492220457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:06 Heat of formation + Delta-G solvation = -38.730452 kcal Electronic energy + Delta-G solvation = -23179.405933 eV Core-core repulsion = 19831.881972 eV Total energy + Delta-G solvation = -3347.523961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27907 -40.40839 -38.25735 -36.86630 -35.03435 -34.61113 -31.59561 -31.09239 -30.79003 -29.01339 -27.98662 -25.79710 -24.43624 -23.82529 -22.90988 -21.76642 -19.51872 -18.85994 -18.56962 -18.13719 -17.17627 -16.98787 -16.59760 -16.45118 -16.01005 -15.57280 -15.39305 -14.89875 -14.64943 -14.50508 -14.37000 -14.11985 -13.71018 -13.49406 -13.34114 -13.16585 -13.06040 -12.80754 -12.65060 -12.48891 -12.41106 -12.15509 -11.98235 -11.85553 -11.74416 -11.68970 -10.83494 -10.63942 -10.42709 -9.42200 -9.23670 -8.84523 -8.20353 -6.35451 -0.08685 0.60574 0.94655 1.35690 1.38501 1.48421 2.32724 2.38514 2.54827 2.60290 2.93028 3.08472 3.78976 3.89465 3.96874 4.13068 4.17759 4.31692 4.42328 4.43482 4.45962 4.52972 4.56842 4.65431 4.74561 4.79741 4.93042 5.00801 5.04047 5.07831 5.15749 5.21489 5.33149 5.40587 5.46278 5.58734 5.61519 5.73670 5.88301 5.93838 6.09395 6.50755 6.73090 6.90599 7.31062 7.61291 8.86249 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.005331 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.051477 B = 5250.585774 C = 6481.326094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.601 5.601 4 C 0.266 3.734 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.262 1.262 13 C 0.518 3.482 14 O -0.576 6.576 15 C -0.214 4.214 16 C -0.012 4.012 17 C -0.114 4.114 18 C -0.021 4.021 19 C -0.184 4.184 20 C -0.077 4.077 21 C -0.222 4.222 22 C 0.130 3.870 23 O -0.328 6.328 24 C 0.019 3.981 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.069 0.931 30 H -0.007 1.007 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -2.328 -19.278 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.332 5.332 4 C 0.144 3.856 5 C -0.574 4.574 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.186 1.186 13 C 0.310 3.690 14 O -0.458 6.458 15 C -0.235 4.235 16 C -0.032 4.032 17 C -0.115 4.115 18 C -0.039 4.039 19 C -0.202 4.202 20 C -0.095 4.095 21 C -0.241 4.241 22 C 0.085 3.915 23 O -0.242 6.242 24 C -0.075 4.075 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.163 -1.816 -19.095 19.440 hybrid contribution 0.849 0.463 1.140 1.495 sum -2.314 -1.353 -17.955 18.154 Atomic orbital electron populations 1.22153 0.94770 1.03394 1.01487 1.21738 0.95169 0.81673 1.03696 1.48232 1.63756 1.14921 1.06281 1.18623 0.95196 0.91326 0.80431 1.21671 0.97706 1.31664 1.06363 0.92940 1.25842 1.02273 0.94529 0.96428 1.70065 1.37720 1.34363 1.14890 0.85448 0.79193 0.78857 0.77517 1.20587 1.20041 1.18567 1.19089 0.77920 0.86586 0.85449 1.90817 1.47422 1.19867 1.87733 1.23251 1.07260 1.02235 0.90712 1.22467 0.90812 0.91420 0.98479 1.18413 0.97517 0.94907 1.00620 1.20884 0.92847 0.97997 0.92187 1.21075 1.01983 0.94553 1.02630 1.21228 0.95929 0.98038 0.94299 1.21342 0.98084 0.98453 1.06207 1.19137 0.86796 0.93979 0.91615 1.85951 1.39273 1.41131 1.57809 1.23346 1.03055 0.86246 0.94899 0.88554 0.94600 0.92294 0.88104 0.91206 0.98855 0.96571 0.92523 0.81604 0.81529 0.88247 0.86188 0.83560 0.82897 0.91118 0.85971 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 10.24 71.98 0.74 -3.53 16 2 C 0.10 3.22 5.80 86.38 0.50 3.72 16 3 N -0.60 -26.78 2.46 -831.38 -2.04 -28.82 16 4 C 0.27 14.92 5.16 85.64 0.44 15.36 16 5 C -0.54 -31.60 9.38 25.60 0.24 -31.36 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 9 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.52 22.76 6.83 86.32 0.59 23.35 16 14 O -0.58 -30.33 11.95 -4.40 -0.05 -30.39 16 15 C -0.21 -6.77 9.07 23.61 0.21 -6.55 16 16 C -0.01 -0.37 9.33 23.81 0.22 -0.14 16 17 C -0.11 -3.99 4.36 -20.07 -0.09 -4.08 16 18 C -0.02 -0.80 6.73 22.57 0.15 -0.65 16 19 C -0.18 -6.56 10.02 22.24 0.22 -6.34 16 20 C -0.08 -2.30 10.03 22.32 0.22 -2.08 16 21 C -0.22 -6.27 9.03 22.33 0.20 -6.07 16 22 C 0.13 4.10 6.70 22.88 0.15 4.26 16 23 O -0.33 -8.75 9.95 -90.11 -0.90 -9.65 16 24 C 0.02 0.31 9.81 113.37 1.11 1.42 16 25 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.10 2.55 6.17 -2.39 -0.01 2.53 16 29 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 30 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 31 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.17 3.80 6.32 -2.91 -0.02 3.79 16 34 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.10 4.14 7.44 -2.91 -0.02 4.12 16 36 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.15 3.18 6.30 -2.91 -0.02 3.16 16 39 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.05 0.91 7.66 -2.39 -0.02 0.89 16 Total: -1.00 -78.64 344.46 5.72 -72.92 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.01 Total: 17.31 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.39 Total: -11.77 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.76 Total: -86.21 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.95 Total: -40.04 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.64 5.72 -72.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492220457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.189 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds