Wall clock time and date at job start Tue Mar 31 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47112 * 2 1 4 4 C 1.46506 * 119.99542 * 90.00151 * 3 2 1 5 5 C 1.50698 * 109.47133 * 90.00025 * 4 3 2 6 6 H 1.08000 * 120.00374 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00115 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47157 * 60.00543 * 9 7 5 11 11 H 1.48498 * 109.47198 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47448 * 300.00298 * 9 7 5 13 13 C 1.34774 * 120.00029 * 269.99966 * 3 2 1 14 14 O 1.21704 * 119.99516 * 180.02562 * 13 3 2 15 15 C 1.46424 * 120.00378 * 0.02562 * 13 3 2 16 16 C 1.34796 * 120.00201 * 173.22921 * 15 13 3 17 17 C 1.47220 * 120.00341 * 349.02598 * 16 15 13 18 18 C 1.39867 * 120.14340 * 136.36610 * 17 16 15 19 19 C 1.37897 * 119.93696 * 180.02562 * 18 17 16 20 20 C 1.38330 * 120.23098 * 359.97438 * 19 18 17 21 21 C 1.38856 * 120.29064 * 0.02562 * 20 19 18 22 22 O 1.35911 * 119.96889 * 180.02562 * 21 20 19 23 23 C 1.42903 * 117.00017 * 0.02562 * 22 21 20 24 24 C 1.38417 * 120.05612 * 359.72180 * 21 20 19 25 25 H 1.09004 * 109.47232 * 59.99682 * 1 2 3 26 26 H 1.08998 * 109.47772 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47026 * 300.00154 * 1 2 3 28 28 H 1.08995 * 109.46954 * 239.99603 * 2 1 3 29 29 H 1.08997 * 109.46857 * 120.00398 * 2 1 3 30 30 H 1.09004 * 109.46649 * 209.99364 * 4 3 2 31 31 H 1.08997 * 109.47458 * 329.99398 * 4 3 2 32 32 H 0.96993 * 119.99921 * 179.97438 * 8 7 5 33 33 H 1.08003 * 119.99733 * 353.22598 * 15 13 3 34 34 H 1.08005 * 120.00162 * 169.02910 * 16 15 13 35 35 H 1.07998 * 120.03161 * 0.03157 * 18 17 16 36 36 H 1.08007 * 119.88308 * 180.02562 * 19 18 17 37 37 H 1.08007 * 119.85094 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.46642 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.46645 * 299.99315 * 23 22 21 40 40 H 1.08991 * 109.47355 * 59.99449 * 23 22 21 41 41 H 1.08009 * 120.11451 * 180.30079 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 3.6857 1.8349 1.7038 6 1 4.3427 1.2301 1.0963 7 6 4.1494 2.3902 2.8776 8 7 3.3494 3.1263 3.6178 9 14 5.9134 2.0961 3.4171 10 1 6.8413 2.6185 2.3821 11 1 6.1609 2.7961 4.7032 12 1 6.1402 0.6394 3.5954 13 6 2.2429 2.0165 -1.1672 14 8 2.6491 3.1638 -1.1671 15 6 1.9984 1.3265 -2.4353 16 6 2.0910 2.0013 -3.5985 17 6 2.1971 3.4696 -3.5914 18 6 3.1126 4.1117 -4.4316 19 6 3.2088 5.4873 -4.4211 20 6 2.4023 6.2355 -3.5825 21 6 1.4902 5.6079 -2.7445 22 8 0.7006 6.3495 -1.9236 23 6 0.8623 7.7684 -1.9756 24 6 1.3799 4.2282 -2.7491 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 2.0956 3.1410 1.1385 31 1 1.5817 1.6877 2.0284 32 1 3.6754 3.5166 4.4437 33 1 1.7439 0.2769 -2.4386 34 1 2.0873 1.4647 -4.5359 35 1 3.7435 3.5308 -5.0880 36 1 3.9158 5.9823 -5.0705 37 1 2.4825 7.3126 -3.5795 38 1 0.1738 8.2384 -1.2735 39 1 1.8870 8.0272 -1.7088 40 1 0.6493 8.1216 -2.9845 41 1 0.6673 3.7393 -2.1011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492222207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:13 Heat of formation + Delta-G solvation = -15.620860 kcal Electronic energy + Delta-G solvation = -23145.719027 eV Core-core repulsion = 19799.197174 eV Total energy + Delta-G solvation = -3346.521853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93304 -38.97216 -37.14872 -35.23721 -33.37410 -32.64542 -30.30564 -30.01014 -29.30018 -27.21312 -26.87428 -24.05799 -22.93725 -22.49220 -21.76553 -20.28533 -18.26778 -17.31080 -16.51314 -16.28327 -15.94067 -15.63147 -15.44691 -15.24468 -14.31730 -14.24498 -13.90436 -13.44452 -13.32737 -13.16504 -13.03236 -12.47849 -12.29214 -12.13059 -11.92335 -11.77139 -11.55423 -11.28780 -11.14481 -10.95023 -10.87997 -10.67613 -10.58923 -10.43924 -10.09836 -9.60941 -9.55673 -8.94726 -8.38393 -7.88600 -7.78306 -7.43440 -5.99204 -4.03647 1.05992 1.87179 2.21609 3.34413 3.38508 3.42064 3.57489 4.02081 4.13182 4.17644 4.49376 4.93695 5.04680 5.13270 5.23137 5.28502 5.32322 5.34829 5.39306 5.51922 5.59472 5.62949 5.69560 5.75159 5.80782 5.88612 6.09513 6.26905 6.29272 6.38746 6.43266 6.55805 6.64064 6.72172 6.89182 7.07390 7.18797 7.52675 7.62997 7.74375 7.97717 8.29508 8.51904 8.96355 9.20596 9.61129 11.08641 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.005413 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.421381 B = 5171.206589 C = 6014.780859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.524 3.476 14 O -0.524 6.524 15 C -0.191 4.191 16 C -0.053 4.053 17 C -0.024 4.024 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.202 4.202 21 C 0.115 3.885 22 O -0.317 6.317 23 C 0.031 3.969 24 C -0.060 4.060 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 0.224 -15.355 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.312 3.688 14 O -0.402 6.402 15 C -0.212 4.212 16 C -0.073 4.073 17 C -0.024 4.024 18 C -0.158 4.158 19 C -0.117 4.117 20 C -0.220 4.220 21 C 0.071 3.929 22 O -0.230 6.230 23 C -0.064 4.064 24 C -0.079 4.079 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.974 0.877 -14.973 16.145 hybrid contribution 1.253 -0.082 0.484 1.345 sum -4.722 0.795 -14.489 15.260 Atomic orbital electron populations 1.22229 0.96794 1.01293 1.02387 1.21440 0.93494 0.84417 1.02548 1.48245 1.62842 1.13146 1.07865 1.19244 0.96098 0.93704 0.78155 1.21400 0.96950 1.31745 1.06156 0.92610 1.24924 0.97729 0.94988 0.96440 1.69927 1.35650 1.33506 1.14347 0.86585 0.84995 0.78214 0.77778 1.20249 1.21203 1.20274 1.18270 0.79765 0.86613 0.84167 1.90877 1.45552 1.17061 1.86736 1.23418 1.03408 1.00844 0.93488 1.22216 0.95207 0.92342 0.97487 1.18555 0.95852 0.92396 0.95627 1.20994 0.99789 0.94357 1.00672 1.20627 0.98598 0.93758 0.98726 1.21168 1.00228 0.99785 1.00856 1.18761 0.91820 0.91187 0.91173 1.86094 1.58607 1.18695 1.59638 1.22967 1.02453 0.79254 1.01773 1.20297 1.00484 0.90108 0.97018 0.92946 0.92294 0.92127 0.91602 0.90129 0.93808 0.95162 0.92752 0.85215 0.85002 0.86351 0.86376 0.86186 0.88606 0.92803 0.93219 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.73 5.88 -4.04 -0.02 1.70 16 3 N -0.59 -12.76 2.46 -176.70 -0.43 -13.19 16 4 C 0.25 6.61 5.16 -5.19 -0.03 6.58 16 5 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.52 11.14 6.66 -12.97 -0.09 11.05 16 14 O -0.52 -13.18 11.73 5.18 0.06 -13.12 16 15 C -0.19 -3.00 9.14 -37.51 -0.34 -3.34 16 16 C -0.05 -0.75 9.81 -37.15 -0.36 -1.11 16 17 C -0.02 -0.40 4.53 -105.08 -0.48 -0.88 16 18 C -0.14 -2.09 9.79 -39.10 -0.38 -2.47 16 19 C -0.10 -1.42 10.02 -39.67 -0.40 -1.82 16 20 C -0.20 -3.11 9.04 -39.32 -0.36 -3.47 16 21 C 0.12 2.08 6.68 -39.29 -0.26 1.81 16 22 O -0.32 -5.58 10.49 -19.46 -0.20 -5.78 16 23 C 0.03 0.38 9.81 101.05 0.99 1.37 16 24 C -0.06 -1.13 6.54 -38.95 -0.25 -1.38 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.90 6.02 -51.93 -0.31 0.58 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.13 1.61 6.15 -52.48 -0.32 1.28 16 34 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.12 1.53 6.28 -52.48 -0.33 1.20 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.65 7.65 -51.93 -0.40 0.26 16 40 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 41 H 0.12 2.40 7.04 -52.48 -0.37 2.03 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -35.02 344.18 -7.55 -42.57 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.86 Total: 1.12 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.02 Total: -7.73 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.30 Total: -39.60 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.14 Total: -18.90 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.02 -7.55 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492222207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.950 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds