Wall clock time and date at job start Tue Mar 31 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47112 * 2 1 4 4 C 1.46506 * 119.99542 * 90.00151 * 3 2 1 5 5 C 1.50698 * 109.47133 * 90.00025 * 4 3 2 6 6 H 1.08000 * 120.00374 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00115 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47157 * 60.00543 * 9 7 5 11 11 H 1.48498 * 109.47198 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47448 * 300.00298 * 9 7 5 13 13 C 1.34774 * 120.00029 * 269.99966 * 3 2 1 14 14 O 1.21704 * 119.99516 * 180.02562 * 13 3 2 15 15 C 1.46424 * 120.00378 * 0.02562 * 13 3 2 16 16 C 1.34796 * 120.00201 * 173.22921 * 15 13 3 17 17 C 1.47220 * 120.00341 * 349.02598 * 16 15 13 18 18 C 1.39867 * 120.14340 * 136.36610 * 17 16 15 19 19 C 1.37897 * 119.93696 * 180.02562 * 18 17 16 20 20 C 1.38330 * 120.23098 * 359.97438 * 19 18 17 21 21 C 1.38856 * 120.29064 * 0.02562 * 20 19 18 22 22 O 1.35911 * 119.96889 * 180.02562 * 21 20 19 23 23 C 1.42903 * 117.00017 * 0.02562 * 22 21 20 24 24 C 1.38417 * 120.05612 * 359.72180 * 21 20 19 25 25 H 1.09004 * 109.47232 * 59.99682 * 1 2 3 26 26 H 1.08998 * 109.47772 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47026 * 300.00154 * 1 2 3 28 28 H 1.08995 * 109.46954 * 239.99603 * 2 1 3 29 29 H 1.08997 * 109.46857 * 120.00398 * 2 1 3 30 30 H 1.09004 * 109.46649 * 209.99364 * 4 3 2 31 31 H 1.08997 * 109.47458 * 329.99398 * 4 3 2 32 32 H 0.96993 * 119.99921 * 179.97438 * 8 7 5 33 33 H 1.08003 * 119.99733 * 353.22598 * 15 13 3 34 34 H 1.08005 * 120.00162 * 169.02910 * 16 15 13 35 35 H 1.07998 * 120.03161 * 0.03157 * 18 17 16 36 36 H 1.08007 * 119.88308 * 180.02562 * 19 18 17 37 37 H 1.08007 * 119.85094 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.46642 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.46645 * 299.99315 * 23 22 21 40 40 H 1.08991 * 109.47355 * 59.99449 * 23 22 21 41 41 H 1.08009 * 120.11451 * 180.30079 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 3.6857 1.8349 1.7038 6 1 4.3427 1.2301 1.0963 7 6 4.1494 2.3902 2.8776 8 7 3.3494 3.1263 3.6178 9 14 5.9134 2.0961 3.4171 10 1 6.8413 2.6185 2.3821 11 1 6.1609 2.7961 4.7032 12 1 6.1402 0.6394 3.5954 13 6 2.2429 2.0165 -1.1672 14 8 2.6491 3.1638 -1.1671 15 6 1.9984 1.3265 -2.4353 16 6 2.0910 2.0013 -3.5985 17 6 2.1971 3.4696 -3.5914 18 6 3.1126 4.1117 -4.4316 19 6 3.2088 5.4873 -4.4211 20 6 2.4023 6.2355 -3.5825 21 6 1.4902 5.6079 -2.7445 22 8 0.7006 6.3495 -1.9236 23 6 0.8623 7.7684 -1.9756 24 6 1.3799 4.2282 -2.7491 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 2.0956 3.1410 1.1385 31 1 1.5817 1.6877 2.0284 32 1 3.6754 3.5166 4.4437 33 1 1.7439 0.2769 -2.4386 34 1 2.0873 1.4647 -4.5359 35 1 3.7435 3.5308 -5.0880 36 1 3.9158 5.9823 -5.0705 37 1 2.4825 7.3126 -3.5795 38 1 0.1738 8.2384 -1.2735 39 1 1.8870 8.0272 -1.7088 40 1 0.6493 8.1216 -2.9845 41 1 0.6673 3.7393 -2.1011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492222207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:12 Heat of formation + Delta-G solvation = -37.961915 kcal Electronic energy + Delta-G solvation = -23146.687808 eV Core-core repulsion = 19799.197174 eV Total energy + Delta-G solvation = -3347.490634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24908 -40.44799 -38.41294 -36.85993 -35.00643 -34.43731 -31.59338 -31.49808 -30.57682 -28.99323 -28.06047 -25.77390 -24.44803 -23.89622 -23.03222 -21.69502 -19.60005 -18.85663 -18.47932 -17.85193 -17.16747 -16.96904 -16.83495 -16.61423 -16.18538 -15.78120 -15.16984 -14.80704 -14.64134 -14.49106 -14.29710 -14.18114 -13.70196 -13.52014 -13.36349 -13.19994 -13.08674 -12.81957 -12.65533 -12.54557 -12.39981 -12.16736 -12.10212 -11.84983 -11.75706 -11.70087 -10.78742 -10.65733 -10.50712 -9.42415 -9.06111 -8.95453 -8.22351 -6.38201 -0.16707 0.64538 1.00012 1.33381 1.38185 1.45604 2.30297 2.43800 2.53460 2.61122 2.95718 3.05784 3.79358 3.88470 3.94904 4.12665 4.21112 4.26801 4.33953 4.40678 4.44559 4.52263 4.57086 4.61811 4.64783 4.73928 4.92936 4.99632 5.03737 5.09721 5.19044 5.19549 5.35037 5.39842 5.45191 5.56476 5.58345 5.69929 5.89520 5.97019 6.07034 6.54819 6.70386 6.89184 7.28497 7.60217 8.83936 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.005413 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.421381 B = 5171.206589 C = 6014.780859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.267 3.733 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.258 1.258 13 C 0.511 3.489 14 O -0.576 6.576 15 C -0.206 4.206 16 C -0.026 4.026 17 C -0.045 4.045 18 C -0.142 4.142 19 C -0.099 4.099 20 C -0.208 4.208 21 C 0.087 3.913 22 O -0.352 6.352 23 C 0.023 3.977 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.105 0.895 29 H 0.068 0.932 30 H -0.009 1.009 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.171 0.829 34 H 0.188 0.812 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 -1.335 -18.025 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.331 5.331 4 C 0.145 3.855 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.182 1.182 13 C 0.303 3.697 14 O -0.458 6.458 15 C -0.227 4.227 16 C -0.045 4.045 17 C -0.045 4.045 18 C -0.160 4.160 19 C -0.117 4.117 20 C -0.226 4.226 21 C 0.043 3.957 22 O -0.267 6.267 23 C -0.072 4.072 24 C -0.110 4.110 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.052 0.948 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.009 0.991 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.188 0.812 34 H 0.205 0.795 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.576 -0.725 -17.661 18.259 hybrid contribution 0.758 0.522 1.261 1.562 sum -3.817 -0.203 -16.400 16.840 Atomic orbital electron populations 1.22152 0.94812 1.03414 1.01379 1.21765 0.95110 0.81583 1.03863 1.48258 1.63478 1.15069 1.06311 1.18596 0.95124 0.91221 0.80550 1.21671 0.97816 1.31887 1.06470 0.92954 1.25895 1.02503 0.94473 0.96435 1.70064 1.37869 1.34275 1.14792 0.85468 0.78878 0.79146 0.77322 1.20437 1.20228 1.18232 1.19274 0.78490 0.86254 0.85702 1.90850 1.47825 1.19429 1.87657 1.23347 1.06223 1.02446 0.90637 1.22785 0.91503 0.91156 0.99093 1.18985 0.95953 0.94013 0.95530 1.21454 0.99218 0.95044 1.00286 1.21147 0.98299 0.93950 0.98276 1.21508 0.99554 1.01250 1.00304 1.19112 0.92984 0.91420 0.92221 1.86038 1.59217 1.21150 1.60260 1.23255 1.02982 0.76990 1.03931 1.20312 1.01587 0.91001 0.98058 0.92336 0.88447 0.94809 0.87685 0.91297 0.99102 0.96594 0.92469 0.81167 0.79495 0.82892 0.82703 0.83838 0.86930 0.92906 0.90656 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 10.24 71.98 0.74 -3.53 16 2 C 0.10 3.18 5.88 86.38 0.51 3.69 16 3 N -0.60 -26.97 2.46 -831.18 -2.04 -29.01 16 4 C 0.27 15.27 5.16 85.63 0.44 15.71 16 5 C -0.54 -32.54 9.39 25.60 0.24 -32.30 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.33 5.46 84.65 0.46 0.80 16 8 N -0.93 -58.59 13.29 21.45 0.28 -58.31 16 9 Si 0.97 46.46 29.54 68.60 2.03 48.49 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.51 22.39 6.66 86.37 0.57 22.97 16 14 O -0.58 -30.68 11.73 -4.36 -0.05 -30.73 16 15 C -0.21 -6.09 9.14 23.61 0.22 -5.87 16 16 C -0.03 -0.67 9.81 23.84 0.23 -0.43 16 17 C -0.04 -1.45 4.53 -20.16 -0.09 -1.54 16 18 C -0.14 -3.87 9.79 22.58 0.22 -3.65 16 19 C -0.10 -2.61 10.02 22.21 0.22 -2.39 16 20 C -0.21 -6.30 9.04 22.44 0.20 -6.10 16 21 C 0.09 3.29 6.68 22.46 0.15 3.44 16 22 O -0.35 -13.27 10.49 -92.55 -0.97 -14.24 16 23 C 0.02 0.57 9.81 113.37 1.11 1.69 16 24 C -0.09 -3.57 6.54 22.68 0.15 -3.42 16 25 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.11 2.54 6.02 -2.39 -0.01 2.53 16 29 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 30 H -0.01 -0.61 7.42 -2.38 -0.02 -0.63 16 31 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.17 3.50 6.15 -2.91 -0.02 3.48 16 34 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.14 3.49 6.28 -2.91 -0.02 3.47 16 38 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.31 7.65 -2.39 -0.02 1.30 16 40 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 41 H 0.09 3.93 7.04 -2.91 -0.02 3.91 16 Total: -1.00 -83.96 344.18 5.64 -78.32 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.02 Total: 16.44 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.38 Total: -10.96 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -1.76 Total: -87.31 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.02 Total: -44.98 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -83.96 5.64 -78.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492222207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.356 kcal (2) G-P(sol) polarization free energy of solvation -83.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds