Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47256 * 2 1 4 4 C 1.35729 * 117.00223 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.88855 * 179.97438 * 4 3 2 6 6 C 1.37667 * 120.11497 * 180.02562 * 5 4 3 7 7 C 1.39968 * 119.88512 * 0.02562 * 6 5 4 8 8 C 1.47000 * 120.11364 * 179.97438 * 7 6 5 9 9 C 1.34974 * 120.00189 * 136.35762 * 8 7 6 10 10 C 1.46261 * 119.99768 * 349.03616 * 9 8 7 11 11 O 1.21716 * 120.00085 * 353.22245 * 10 9 8 12 12 N 1.34783 * 120.00055 * 172.93914 * 10 9 8 13 13 C 1.46504 * 119.99888 * 180.27874 * 12 10 9 14 14 C 1.53000 * 109.46812 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47006 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46831 * 90.00355 * 19 17 15 21 21 H 1.48497 * 109.47054 * 210.00379 * 19 17 15 22 22 H 1.48498 * 109.47156 * 330.00527 * 19 17 15 23 23 C 1.39970 * 119.77637 * 0.25723 * 7 6 5 24 24 C 1.37664 * 119.87987 * 359.46786 * 23 7 6 25 25 H 1.08999 * 109.47552 * 300.00320 * 1 2 3 26 26 H 1.09005 * 109.47083 * 59.99866 * 1 2 3 27 27 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47552 * 239.99680 * 2 1 3 29 29 H 1.08998 * 109.47162 * 119.99781 * 2 1 3 30 30 H 1.07996 * 119.94453 * 359.97438 * 5 4 3 31 31 H 1.08003 * 120.05479 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.00388 * 316.36124 * 8 7 6 33 33 H 1.07995 * 120.00540 * 169.03718 * 9 8 7 34 34 H 0.96996 * 119.99603 * 0.28019 * 12 10 9 35 35 H 1.08991 * 109.46950 * 300.00024 * 13 12 10 36 36 H 1.09004 * 109.46669 * 60.00079 * 13 12 10 37 37 H 1.08999 * 109.47147 * 300.00576 * 14 13 12 38 38 H 1.09002 * 109.46870 * 60.00017 * 14 13 12 39 39 H 0.97002 * 119.99534 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.06095 * 179.74261 * 23 7 6 41 41 H 1.08004 * 119.94429 * 180.28193 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 3.8808 2.8108 0.0000 6 6 5.2448 2.9966 0.0000 7 6 6.0996 1.8883 0.0000 8 6 7.5570 2.0808 -0.0005 9 6 8.3372 1.3309 0.8061 10 6 7.7296 0.5023 1.8471 11 8 6.5353 0.5816 2.0682 12 7 8.4911 -0.3531 2.5576 13 6 7.8814 -1.1874 3.5962 14 6 8.9568 -2.0611 4.2450 15 6 8.3298 -2.9189 5.3137 16 1 7.2701 -2.8482 5.5101 17 6 9.1087 -3.7946 6.0399 18 7 10.3989 -3.8810 5.8002 19 14 8.3313 -4.8584 7.3641 20 1 7.8824 -6.1421 6.7675 21 1 9.3290 -5.1299 8.4299 22 1 7.1645 -4.1488 7.9474 23 6 5.5622 0.5959 -0.0055 24 6 4.1967 0.4210 0.0003 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2204 3.6653 -0.0012 31 1 5.6546 3.9959 0.0001 32 1 8.0035 2.8225 -0.6463 33 1 9.4100 1.3425 0.6830 34 1 9.4428 -0.4163 2.3814 35 1 7.4254 -0.5496 4.3532 36 1 7.1177 -1.8237 3.1490 37 1 9.4126 -2.6988 3.4875 38 1 9.7209 -1.4250 4.6919 39 1 10.9469 -4.4969 6.3114 40 1 6.2174 -0.2625 -0.0097 41 1 3.7808 -0.5758 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492424100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -38.262130 kcal Electronic energy + Delta-G solvation = -21834.860601 eV Core-core repulsion = 18487.356949 eV Total energy + Delta-G solvation = -3347.503653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21675 -39.30207 -37.45389 -34.89910 -33.42400 -32.84261 -31.81569 -30.87013 -29.86915 -28.40269 -25.16693 -24.10396 -23.41038 -21.84218 -21.35070 -20.74604 -19.14897 -18.30722 -17.14394 -16.35504 -16.18844 -15.88353 -15.35139 -14.90766 -14.68153 -14.43553 -14.05120 -14.01314 -13.52467 -13.43948 -13.20688 -12.95786 -12.78664 -12.62519 -12.29138 -12.02253 -11.80906 -11.49549 -11.20944 -11.04787 -10.93212 -10.72562 -10.64517 -10.33767 -9.77032 -9.54662 -9.46914 -9.22019 -8.81877 -8.48752 -8.27027 -7.62520 -6.10527 -4.13351 0.86402 1.55846 2.00598 3.14443 3.28267 3.34441 3.38620 3.66178 3.83028 3.94731 4.41319 4.73686 4.74913 4.81210 4.92843 4.97847 5.07135 5.15274 5.26543 5.28891 5.39841 5.42498 5.55361 5.58032 5.78120 5.81977 6.02563 6.07586 6.20656 6.34698 6.35604 6.45347 6.53480 6.73763 6.74117 6.83315 6.95790 7.44354 7.51496 7.61028 7.87960 8.07091 8.27646 8.72180 8.92834 9.51532 11.01110 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003303 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.776680 B = 8475.557628 C =10097.606065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.138 3.862 5 C -0.170 4.170 6 C -0.062 4.062 7 C -0.108 4.108 8 C -0.028 4.028 9 C -0.210 4.210 10 C 0.527 3.473 11 O -0.539 6.539 12 N -0.717 5.717 13 C 0.123 3.877 14 C 0.012 3.988 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.010 3.990 24 C -0.218 4.218 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.116 0.884 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 11.460 -15.711 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.093 3.907 5 C -0.189 4.189 6 C -0.080 4.080 7 C -0.108 4.108 8 C -0.048 4.048 9 C -0.231 4.231 10 C 0.315 3.685 11 O -0.419 6.419 12 N -0.366 5.366 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.008 4.008 24 C -0.237 4.237 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.231 0.769 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.134 0.866 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.390 11.520 -15.447 22.384 hybrid contribution 0.446 -0.988 0.870 1.391 sum -10.943 10.532 -14.577 21.051 Atomic orbital electron populations 1.21770 0.92891 1.02802 1.03342 1.22777 0.95662 0.82099 1.01663 1.85981 1.19518 1.29281 1.88544 1.19100 0.81855 0.94193 0.95535 1.20133 0.95028 0.94411 1.09309 1.20910 0.92022 0.97887 0.97194 1.18731 0.92605 0.93319 1.06128 1.22247 0.92117 0.95159 0.95239 1.23117 1.00360 1.01418 0.98226 1.18456 0.86926 0.80404 0.82732 1.90858 1.14549 1.67770 1.68694 1.46346 1.12077 1.40255 1.37881 1.21688 0.97744 0.92348 0.88189 1.19321 0.93413 0.94096 0.95665 1.21055 0.94978 1.21623 1.18374 0.92302 1.24997 0.94823 0.97080 0.97388 1.69955 1.04853 1.37307 1.41206 0.86517 0.79084 0.80664 0.81332 1.20554 1.21139 1.19722 1.20854 0.93923 0.95942 0.90120 1.21024 0.94288 0.97733 1.10616 0.91535 0.91694 0.90411 0.92094 0.91772 0.85666 0.85648 0.85074 0.85177 0.76944 0.92627 0.92695 0.95988 0.95971 0.92838 0.86559 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.54 5.45 37.16 0.20 0.74 16 3 O -0.32 -4.18 10.12 -18.89 -0.19 -4.37 16 4 C 0.14 1.95 6.70 -39.00 -0.26 1.69 16 5 C -0.17 -2.22 9.97 -39.50 -0.39 -2.62 16 6 C -0.06 -0.77 9.79 -39.14 -0.38 -1.16 16 7 C -0.11 -1.47 4.53 -105.05 -0.48 -1.94 16 8 C -0.03 -0.32 9.80 -37.19 -0.36 -0.68 16 9 C -0.21 -2.62 9.91 -37.52 -0.37 -2.99 16 10 C 0.53 8.88 6.79 -13.03 -0.09 8.79 16 11 O -0.54 -10.71 12.16 5.17 0.06 -10.65 16 12 N -0.72 -12.51 5.55 -61.75 -0.34 -12.86 16 13 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.01 0.15 6.59 -39.14 -0.26 -0.11 16 24 C -0.22 -3.13 9.01 -39.50 -0.36 -3.49 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 29 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.40 6.00 8.45 -40.82 -0.35 5.65 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.12 1.77 7.03 -52.49 -0.37 1.40 16 41 H 0.12 1.58 6.27 -52.48 -0.33 1.25 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -32.69 348.39 -8.48 -41.17 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.03 Total: 3.58 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.94 Total: -13.07 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.39 Total: -38.30 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.13 Total: -15.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.69 -8.48 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492424100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.908 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds