Wall clock time and date at job start Tue Mar 31 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47256 * 2 1 4 4 C 1.35729 * 117.00223 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.88855 * 179.97438 * 4 3 2 6 6 C 1.37667 * 120.11497 * 180.02562 * 5 4 3 7 7 C 1.39968 * 119.88512 * 0.02562 * 6 5 4 8 8 C 1.47000 * 120.11364 * 179.97438 * 7 6 5 9 9 C 1.34974 * 120.00189 * 136.35762 * 8 7 6 10 10 C 1.46261 * 119.99768 * 349.03616 * 9 8 7 11 11 O 1.21716 * 120.00085 * 353.22245 * 10 9 8 12 12 N 1.34783 * 120.00055 * 172.93914 * 10 9 8 13 13 C 1.46504 * 119.99888 * 180.27874 * 12 10 9 14 14 C 1.53000 * 109.46812 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47006 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46831 * 90.00355 * 19 17 15 21 21 H 1.48497 * 109.47054 * 210.00379 * 19 17 15 22 22 H 1.48498 * 109.47156 * 330.00527 * 19 17 15 23 23 C 1.39970 * 119.77637 * 0.25723 * 7 6 5 24 24 C 1.37664 * 119.87987 * 359.46786 * 23 7 6 25 25 H 1.08999 * 109.47552 * 300.00320 * 1 2 3 26 26 H 1.09005 * 109.47083 * 59.99866 * 1 2 3 27 27 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47552 * 239.99680 * 2 1 3 29 29 H 1.08998 * 109.47162 * 119.99781 * 2 1 3 30 30 H 1.07996 * 119.94453 * 359.97438 * 5 4 3 31 31 H 1.08003 * 120.05479 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.00388 * 316.36124 * 8 7 6 33 33 H 1.07995 * 120.00540 * 169.03718 * 9 8 7 34 34 H 0.96996 * 119.99603 * 0.28019 * 12 10 9 35 35 H 1.08991 * 109.46950 * 300.00024 * 13 12 10 36 36 H 1.09004 * 109.46669 * 60.00079 * 13 12 10 37 37 H 1.08999 * 109.47147 * 300.00576 * 14 13 12 38 38 H 1.09002 * 109.46870 * 60.00017 * 14 13 12 39 39 H 0.97002 * 119.99534 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.06095 * 179.74261 * 23 7 6 41 41 H 1.08004 * 119.94429 * 180.28193 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 3.8808 2.8108 0.0000 6 6 5.2448 2.9966 0.0000 7 6 6.0996 1.8883 0.0000 8 6 7.5570 2.0808 -0.0005 9 6 8.3372 1.3309 0.8061 10 6 7.7296 0.5023 1.8471 11 8 6.5353 0.5816 2.0682 12 7 8.4911 -0.3531 2.5576 13 6 7.8814 -1.1874 3.5962 14 6 8.9568 -2.0611 4.2450 15 6 8.3298 -2.9189 5.3137 16 1 7.2701 -2.8482 5.5101 17 6 9.1087 -3.7946 6.0399 18 7 10.3989 -3.8810 5.8002 19 14 8.3313 -4.8584 7.3641 20 1 7.8824 -6.1421 6.7675 21 1 9.3290 -5.1299 8.4299 22 1 7.1645 -4.1488 7.9474 23 6 5.5622 0.5959 -0.0055 24 6 4.1967 0.4210 0.0003 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2204 3.6653 -0.0012 31 1 5.6546 3.9959 0.0001 32 1 8.0035 2.8225 -0.6463 33 1 9.4100 1.3425 0.6830 34 1 9.4428 -0.4163 2.3814 35 1 7.4254 -0.5496 4.3532 36 1 7.1177 -1.8237 3.1490 37 1 9.4126 -2.6988 3.4875 38 1 9.7209 -1.4250 4.6919 39 1 10.9469 -4.4969 6.3114 40 1 6.2174 -0.2625 -0.0097 41 1 3.7808 -0.5758 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492424100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:21 Heat of formation + Delta-G solvation = -58.375602 kcal Electronic energy + Delta-G solvation = -21835.732787 eV Core-core repulsion = 18487.356949 eV Total energy + Delta-G solvation = -3348.375838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27989 -40.52948 -38.50786 -36.56254 -34.80621 -34.44826 -32.66250 -31.86596 -31.62908 -29.53491 -26.96852 -24.98111 -24.69270 -23.16328 -22.54779 -22.18027 -20.37164 -19.29721 -18.63960 -18.09148 -17.07400 -16.97289 -16.73555 -16.50847 -16.30156 -15.76764 -15.26864 -15.04914 -14.75325 -14.41830 -14.34540 -14.27310 -14.02974 -13.97690 -13.36014 -13.23282 -12.98470 -12.90670 -12.62689 -12.54698 -12.44338 -12.24414 -11.81756 -11.69857 -11.63019 -11.46166 -10.72073 -10.62355 -10.53469 -10.04430 -9.66852 -8.66833 -8.26202 -6.36938 -0.15121 0.52193 0.97581 1.39787 1.40384 1.51951 2.25737 2.33114 2.42675 2.53993 2.91633 3.08323 3.83356 3.87580 3.95199 3.99547 4.05009 4.14747 4.30965 4.40279 4.46584 4.47755 4.51442 4.57088 4.72615 4.83790 4.89498 4.90269 5.07350 5.14527 5.15636 5.24530 5.31853 5.42188 5.50260 5.53658 5.56460 5.73331 5.78391 5.86997 6.14682 6.45682 6.73816 6.76920 7.32524 7.39622 8.85651 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003303 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.776680 B = 8475.557628 C =10097.606065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.330 6.330 4 C 0.124 3.876 5 C -0.179 4.179 6 C -0.059 4.059 7 C -0.125 4.125 8 C -0.006 4.006 9 C -0.222 4.222 10 C 0.522 3.478 11 O -0.574 6.574 12 N -0.716 5.716 13 C 0.145 3.855 14 C 0.024 3.976 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.009 4.009 24 C -0.234 4.234 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.409 0.591 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.103 0.897 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 12.626 -16.401 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.244 6.244 4 C 0.078 3.922 5 C -0.198 4.198 6 C -0.077 4.077 7 C -0.126 4.126 8 C -0.026 4.026 9 C -0.243 4.243 10 C 0.313 3.687 11 O -0.456 6.456 12 N -0.366 5.366 13 C 0.021 3.979 14 C -0.014 4.014 15 C -0.587 4.587 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.028 4.028 24 C -0.253 4.253 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.177 0.823 32 H 0.196 0.804 33 H 0.184 0.816 34 H 0.245 0.755 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.524 12.696 -16.161 23.561 hybrid contribution 0.426 -1.322 1.028 1.728 sum -11.098 11.373 -15.132 21.943 Atomic orbital electron populations 1.21790 0.90867 1.04177 1.03428 1.23011 0.97267 0.81044 1.01646 1.85972 1.19055 1.30871 1.88488 1.19342 0.82298 0.94652 0.95872 1.20510 0.95918 0.94574 1.08759 1.21311 0.91644 0.99085 0.95679 1.19106 0.94378 0.93061 1.06012 1.22698 0.90679 0.94670 0.94513 1.23131 1.02144 1.01263 0.97744 1.19239 0.86465 0.79962 0.83033 1.90851 1.16194 1.68793 1.69783 1.46171 1.12812 1.40276 1.37337 1.21119 0.96266 0.91889 0.88666 1.19120 0.93657 0.93774 0.94819 1.21468 0.95181 1.22543 1.19485 0.92534 1.25872 0.95314 0.98322 0.99624 1.70056 1.06113 1.38079 1.42316 0.85452 0.78326 0.78881 0.78443 1.19651 1.20365 1.19167 1.20903 0.94019 0.96492 0.91380 1.21158 0.94535 0.98301 1.11276 0.91900 0.91096 0.88392 0.91230 0.92718 0.83908 0.82265 0.80360 0.81628 0.75500 0.94119 0.93919 0.97341 0.97422 0.92482 0.87923 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.92 5.45 71.98 0.39 1.31 16 3 O -0.33 -8.66 10.12 -90.52 -0.92 -9.57 16 4 C 0.12 3.50 6.70 22.65 0.15 3.65 16 5 C -0.18 -4.46 9.97 22.32 0.22 -4.24 16 6 C -0.06 -1.35 9.79 22.55 0.22 -1.13 16 7 C -0.13 -3.22 4.53 -20.14 -0.09 -3.32 16 8 C -0.01 -0.12 9.80 23.82 0.23 0.11 16 9 C -0.22 -5.00 9.91 23.61 0.23 -4.76 16 10 C 0.52 17.40 6.79 86.33 0.59 17.98 16 11 O -0.57 -23.15 12.16 -4.40 -0.05 -23.20 16 12 N -0.72 -25.11 5.55 -467.49 -2.60 -27.71 16 13 C 0.14 6.37 5.61 86.38 0.48 6.85 16 14 C 0.02 1.22 5.09 29.85 0.15 1.37 16 15 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.01 0.42 5.46 84.65 0.46 0.89 16 18 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 19 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C -0.01 -0.29 6.59 22.55 0.15 -0.14 16 24 C -0.23 -6.93 9.01 22.32 0.20 -6.73 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 29 H 0.05 1.20 7.65 -2.39 -0.02 1.18 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.41 12.22 8.45 -92.71 -0.78 11.44 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.10 3.26 7.03 -2.91 -0.02 3.24 16 41 H 0.13 3.44 6.27 -2.91 -0.02 3.42 16 Total: -1.00 -71.89 348.39 3.36 -68.53 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.24 Total: 20.76 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.37 Total: -20.41 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.31 Total: -82.06 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.97 Total: -32.78 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.89 3.36 -68.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492424100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.155 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds