Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47070 * 2 1 4 4 C 1.34834 * 116.99860 * 179.97438 * 3 2 1 5 5 C 1.34418 * 120.00107 * 179.97438 * 4 3 2 6 6 C 1.41797 * 119.99885 * 0.27942 * 5 4 3 7 7 O 1.21743 * 119.99840 * 359.71957 * 6 5 4 8 8 N 1.34770 * 120.00278 * 179.71920 * 6 5 4 9 9 C 1.46493 * 120.00392 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46868 * 35.00106 * 9 8 6 11 11 C 1.53000 * 109.47629 * 155.00254 * 9 8 6 12 12 C 1.50709 * 109.46676 * 295.00469 * 11 9 8 13 13 H 1.07997 * 120.00151 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99503 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00344 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99724 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47586 * 59.99678 * 16 14 12 18 18 H 1.48500 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47038 * 299.99288 * 16 14 12 20 20 C 1.50703 * 109.47495 * 275.00235 * 9 8 6 21 21 C 1.38230 * 119.99880 * 319.73042 * 20 9 8 22 22 C 1.38236 * 120.00059 * 179.80770 * 21 20 9 23 23 C 1.38233 * 119.99655 * 0.39331 * 22 21 20 24 24 C 1.38240 * 120.00415 * 359.85665 * 23 22 21 25 25 C 1.38233 * 119.99875 * 139.99439 * 20 9 8 26 26 H 1.09007 * 109.46935 * 60.00470 * 1 2 3 27 27 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47090 * 300.00368 * 1 2 3 29 29 H 1.08998 * 109.47592 * 239.99703 * 2 1 3 30 30 H 1.08999 * 109.47084 * 119.99805 * 2 1 3 31 31 H 1.08004 * 120.00484 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.99881 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99567 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.46910 * 54.99747 * 11 9 8 35 35 H 1.08998 * 109.47528 * 175.00291 * 11 9 8 36 36 H 0.96999 * 120.00199 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.00181 * 359.97438 * 21 20 9 38 38 H 1.07999 * 120.00184 * 180.22519 * 22 21 20 39 39 H 1.08007 * 120.00142 * 179.83584 * 23 22 21 40 40 H 1.08000 * 120.00221 * 179.97438 * 24 23 22 41 41 H 1.08006 * 120.00293 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 0.0005 5 6 3.8645 2.7877 0.0000 6 6 3.0007 3.9122 0.0050 7 8 1.7938 3.7527 0.0045 8 7 3.5158 5.1576 0.0102 9 6 2.6235 6.3194 0.0147 10 1 1.7344 6.0923 0.6030 11 6 3.3494 7.5178 0.6293 12 6 3.6447 7.2361 2.0801 13 1 3.3442 6.2965 2.5198 14 6 4.2984 8.1779 2.8460 15 7 4.6647 9.3219 2.3105 16 14 4.6650 7.8285 4.6440 17 1 5.5241 6.6219 4.7487 18 1 5.3705 8.9912 5.2403 19 1 3.3921 7.5947 5.3724 20 6 2.2196 6.6482 -1.3995 21 6 3.1493 6.5709 -2.4195 22 6 2.7778 6.8686 -3.7173 23 6 1.4787 7.2515 -3.9938 24 6 0.5502 7.3338 -2.9729 25 6 0.9208 7.0323 -1.6757 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0087 0.6891 0.0014 32 1 4.9352 2.9291 0.0009 33 1 4.4775 5.2846 0.0102 34 1 4.2839 7.6895 0.0951 35 1 2.7187 8.4033 0.5522 36 1 5.1243 9.9846 2.8494 37 1 4.1652 6.2753 -2.2030 38 1 3.5033 6.8047 -4.5148 39 1 1.1891 7.4867 -5.0073 40 1 -0.4647 7.6333 -3.1889 41 1 0.1953 7.0964 -0.8782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493550373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -41.716640 kcal Electronic energy + Delta-G solvation = -22601.216171 eV Core-core repulsion = 19253.562720 eV Total energy + Delta-G solvation = -3347.653451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65753 -38.85045 -37.86174 -34.96665 -32.62741 -32.59509 -31.16575 -30.39444 -29.98904 -28.61745 -25.02643 -23.23159 -22.87232 -22.16324 -21.80906 -19.76677 -19.36834 -17.78682 -16.75476 -16.07393 -15.91806 -15.63430 -15.46340 -14.76242 -14.45950 -14.43767 -13.88745 -13.48752 -13.09470 -12.97909 -12.86760 -12.57727 -12.41711 -12.37694 -12.28673 -12.02043 -11.43467 -11.39484 -11.08530 -11.04708 -10.81735 -10.63522 -10.54419 -10.32287 -9.66609 -9.21947 -9.00788 -8.48763 -8.42802 -8.37120 -8.08634 -8.01859 -6.01631 -4.04150 1.75063 1.90197 1.91175 3.25879 3.33544 3.37992 3.41546 4.10291 4.13328 4.38212 4.46800 4.68116 4.79918 4.97217 5.07766 5.34730 5.35670 5.38070 5.42647 5.47921 5.66366 5.71113 5.82254 5.95137 6.02504 6.05305 6.08791 6.31621 6.36750 6.48382 6.58538 6.72909 6.94836 6.96326 7.15524 7.27782 7.43982 7.52032 7.59917 7.78550 7.96018 8.35258 8.48172 9.01838 9.16467 9.60118 11.09071 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.005826 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.549835 B = 4804.519130 C = 7031.987721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.282 6.282 4 C 0.119 3.881 5 C -0.292 4.292 6 C 0.546 3.454 7 O -0.546 6.546 8 N -0.705 5.705 9 C 0.185 3.815 10 H 0.084 0.916 11 C 0.024 3.976 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.067 4.067 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.109 4.109 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.397 0.603 34 H 0.023 0.977 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 -14.960 -9.133 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.192 6.192 4 C 0.050 3.950 5 C -0.315 4.315 6 C 0.337 3.663 7 O -0.426 6.426 8 N -0.354 5.354 9 C 0.081 3.919 10 H 0.102 0.898 11 C -0.013 4.013 12 C -0.555 4.555 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.068 4.068 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.156 4.156 24 C -0.142 4.142 25 C -0.128 4.128 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.231 0.769 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.753 -14.757 -9.073 17.725 hybrid contribution 1.071 -0.199 1.017 1.490 sum -2.682 -14.956 -8.056 17.198 Atomic orbital electron populations 1.21713 0.92851 1.02144 1.04129 1.23282 0.96691 0.81922 1.00885 1.86753 1.19529 1.27424 1.85506 1.23005 0.84013 0.97113 0.90845 1.21505 1.00312 0.91921 1.17720 1.16940 0.88491 0.83543 0.77368 1.90799 1.15106 1.86274 1.50444 1.45875 1.10071 1.05155 1.74322 1.20138 0.94510 0.87304 0.89978 0.89792 1.19379 0.95509 0.91024 0.95419 1.21127 1.37278 1.02151 0.94907 0.92421 1.24984 0.95799 0.95051 0.98356 1.69952 1.40125 1.06865 1.36373 0.86658 0.78499 0.77562 0.85283 1.20298 1.21377 1.20264 1.20608 0.93261 0.96102 0.96815 1.20906 0.99282 0.99952 0.92379 1.21026 0.96176 1.00713 0.96514 1.20966 0.93915 1.02100 0.98578 1.21023 0.99055 1.00971 0.93133 1.21020 0.95927 0.99332 0.96474 0.91376 0.90841 0.91286 0.92176 0.92112 0.85516 0.84363 0.76863 0.95843 0.94999 0.92912 0.86582 0.86863 0.86979 0.86740 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.05 0.46 6.85 37.16 0.25 0.72 16 3 O -0.28 -4.21 7.94 -39.49 -0.31 -4.53 16 4 C 0.12 1.53 10.43 29.38 0.31 1.83 16 5 C -0.29 -4.40 9.82 -39.57 -0.39 -4.79 16 6 C 0.55 10.75 7.52 -14.90 -0.11 10.64 16 7 O -0.55 -12.60 14.49 -18.10 -0.26 -12.86 16 8 N -0.70 -13.85 4.03 -57.79 -0.23 -14.08 16 9 C 0.19 4.05 2.11 -69.08 -0.15 3.90 16 10 H 0.08 2.02 7.44 -51.93 -0.39 1.63 16 11 C 0.02 0.60 4.49 -27.88 -0.13 0.48 16 12 C -0.52 -14.17 8.84 -34.43 -0.30 -14.47 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 21 C -0.11 -1.93 9.32 -39.59 -0.37 -2.30 16 22 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 23 C -0.14 -2.09 10.05 -39.58 -0.40 -2.49 16 24 C -0.12 -2.00 10.05 -39.58 -0.40 -2.39 16 25 C -0.11 -2.04 9.67 -39.58 -0.38 -2.42 16 26 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.13 1.02 8.01 -52.48 -0.42 0.60 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.40 7.15 8.56 -40.82 -0.35 6.80 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.12 1.97 7.73 -52.49 -0.41 1.56 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.12 2.15 8.04 -52.48 -0.42 1.72 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -34.24 355.51 -8.60 -42.84 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.18 Total: 7.25 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.69 Total: -15.01 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.50 Total: -39.58 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.58 Total: -17.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.24 -8.60 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493550373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.125 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds