Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47070 * 2 1 4 4 C 1.34834 * 116.99860 * 179.97438 * 3 2 1 5 5 C 1.34418 * 120.00107 * 179.97438 * 4 3 2 6 6 C 1.41797 * 119.99885 * 0.27942 * 5 4 3 7 7 O 1.21743 * 119.99840 * 359.71957 * 6 5 4 8 8 N 1.34770 * 120.00278 * 179.71920 * 6 5 4 9 9 C 1.46493 * 120.00392 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46868 * 35.00106 * 9 8 6 11 11 C 1.53000 * 109.47629 * 155.00254 * 9 8 6 12 12 C 1.50709 * 109.46676 * 295.00469 * 11 9 8 13 13 H 1.07997 * 120.00151 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99503 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00344 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99724 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47586 * 59.99678 * 16 14 12 18 18 H 1.48500 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47038 * 299.99288 * 16 14 12 20 20 C 1.50703 * 109.47495 * 275.00235 * 9 8 6 21 21 C 1.38230 * 119.99880 * 319.73042 * 20 9 8 22 22 C 1.38236 * 120.00059 * 179.80770 * 21 20 9 23 23 C 1.38233 * 119.99655 * 0.39331 * 22 21 20 24 24 C 1.38240 * 120.00415 * 359.85665 * 23 22 21 25 25 C 1.38233 * 119.99875 * 139.99439 * 20 9 8 26 26 H 1.09007 * 109.46935 * 60.00470 * 1 2 3 27 27 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47090 * 300.00368 * 1 2 3 29 29 H 1.08998 * 109.47592 * 239.99703 * 2 1 3 30 30 H 1.08999 * 109.47084 * 119.99805 * 2 1 3 31 31 H 1.08004 * 120.00484 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.99881 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99567 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.46910 * 54.99747 * 11 9 8 35 35 H 1.08998 * 109.47528 * 175.00291 * 11 9 8 36 36 H 0.96999 * 120.00199 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.00181 * 359.97438 * 21 20 9 38 38 H 1.07999 * 120.00184 * 180.22519 * 22 21 20 39 39 H 1.08007 * 120.00142 * 179.83584 * 23 22 21 40 40 H 1.08000 * 120.00221 * 179.97438 * 24 23 22 41 41 H 1.08006 * 120.00293 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 0.0005 5 6 3.8645 2.7877 0.0000 6 6 3.0007 3.9122 0.0050 7 8 1.7938 3.7527 0.0045 8 7 3.5158 5.1576 0.0102 9 6 2.6235 6.3194 0.0147 10 1 1.7344 6.0923 0.6030 11 6 3.3494 7.5178 0.6293 12 6 3.6447 7.2361 2.0801 13 1 3.3442 6.2965 2.5198 14 6 4.2984 8.1779 2.8460 15 7 4.6647 9.3219 2.3105 16 14 4.6650 7.8285 4.6440 17 1 5.5241 6.6219 4.7487 18 1 5.3705 8.9912 5.2403 19 1 3.3921 7.5947 5.3724 20 6 2.2196 6.6482 -1.3995 21 6 3.1493 6.5709 -2.4195 22 6 2.7778 6.8686 -3.7173 23 6 1.4787 7.2515 -3.9938 24 6 0.5502 7.3338 -2.9729 25 6 0.9208 7.0323 -1.6757 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0087 0.6891 0.0014 32 1 4.9352 2.9291 0.0009 33 1 4.4775 5.2846 0.0102 34 1 4.2839 7.6895 0.0951 35 1 2.7187 8.4033 0.5522 36 1 5.1243 9.9846 2.8494 37 1 4.1652 6.2753 -2.2030 38 1 3.5033 6.8047 -4.5148 39 1 1.1891 7.4867 -5.0073 40 1 -0.4647 7.6333 -3.1889 41 1 0.1953 7.0964 -0.8782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493550373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -62.217345 kcal Electronic energy + Delta-G solvation = -22602.105148 eV Core-core repulsion = 19253.562720 eV Total energy + Delta-G solvation = -3348.542429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07221 -40.07064 -39.15364 -36.66099 -34.65835 -33.64524 -32.52048 -31.70377 -31.10594 -30.45020 -26.84487 -24.37947 -23.92995 -23.73543 -23.24778 -21.29358 -20.74407 -18.98543 -18.59164 -17.69314 -17.10906 -16.80125 -16.77172 -16.36211 -16.16248 -15.72752 -15.30207 -14.88815 -14.50637 -14.22231 -14.18173 -14.05134 -13.74750 -13.67055 -13.53071 -13.32804 -13.11811 -12.89954 -12.62610 -12.43679 -12.26239 -12.13001 -11.87695 -11.83920 -11.56153 -11.31978 -10.65789 -10.48570 -9.89145 -9.74609 -9.51250 -9.35611 -8.19612 -6.29975 0.53182 0.56855 0.64354 1.39235 1.41494 1.49783 2.39407 2.40485 2.66990 2.72363 3.02170 3.14599 3.82363 4.03513 4.05058 4.10982 4.18361 4.21923 4.32613 4.40744 4.44435 4.66961 4.68952 4.74200 4.80267 4.82117 4.95034 5.01381 5.14290 5.21113 5.24902 5.29749 5.34227 5.45681 5.62147 5.63921 5.69815 5.79070 6.00421 6.17698 6.22320 6.52137 6.81858 6.98385 7.38517 7.67097 8.91161 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.005826 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.549835 B = 4804.519130 C = 7031.987721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.040 3.960 3 O -0.325 6.325 4 C 0.150 3.850 5 C -0.335 4.335 6 C 0.539 3.461 7 O -0.593 6.593 8 N -0.704 5.704 9 C 0.202 3.798 10 H 0.048 0.952 11 C 0.039 3.961 12 C -0.529 4.529 13 H 0.050 0.950 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.959 3.041 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.276 1.276 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.137 4.137 26 H 0.049 0.951 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.187 0.813 32 H 0.167 0.833 33 H 0.404 0.596 34 H 0.011 0.989 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 -17.185 -10.318 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.034 4.034 3 O -0.236 6.236 4 C 0.081 3.919 5 C -0.357 4.357 6 C 0.333 3.667 7 O -0.477 6.477 8 N -0.353 5.353 9 C 0.096 3.904 10 H 0.066 0.934 11 C 0.002 3.998 12 C -0.567 4.567 13 H 0.068 0.932 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.202 1.202 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.203 0.797 32 H 0.185 0.815 33 H 0.239 0.761 34 H 0.029 0.971 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.827 -16.999 -10.263 20.057 hybrid contribution 0.678 0.406 1.314 1.534 sum -2.149 -16.593 -8.949 18.975 Atomic orbital electron populations 1.21778 0.93306 1.03717 1.02208 1.23636 0.96472 0.79860 1.03452 1.86717 1.21128 1.31077 1.84660 1.23745 0.83968 0.98096 0.86073 1.21589 1.01094 0.91013 1.21992 1.17719 0.88619 0.84279 0.76110 1.90763 1.17193 1.86779 1.52989 1.45798 1.10003 1.04900 1.74634 1.19596 0.92947 0.86771 0.91086 0.93378 1.19115 0.94472 0.91392 0.94829 1.21349 1.37329 1.01951 0.96104 0.93198 1.25802 0.95452 0.94715 1.02849 1.70069 1.40758 1.07734 1.38116 0.85602 0.78382 0.77959 0.79688 1.18977 1.20558 1.20198 1.20504 0.94604 0.98515 0.96046 1.21060 0.99125 1.00588 0.93185 1.21445 0.97408 0.99185 0.96156 1.21466 0.93191 1.00024 1.00117 1.21378 1.00880 0.99864 0.92015 1.21168 0.95584 1.00813 0.97965 0.93137 0.87466 0.93381 0.89314 0.89638 0.79679 0.81518 0.76111 0.97065 0.98189 0.92671 0.86270 0.83438 0.82916 0.83826 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 10.29 71.98 0.74 -1.99 16 2 C 0.04 0.67 6.85 71.98 0.49 1.16 16 3 O -0.33 -9.38 7.94 -58.78 -0.47 -9.85 16 4 C 0.15 3.50 10.43 66.95 0.70 4.19 16 5 C -0.33 -9.83 9.82 22.28 0.22 -9.61 16 6 C 0.54 22.08 7.52 85.12 0.64 22.72 16 7 O -0.59 -28.96 14.49 17.75 0.26 -28.71 16 8 N -0.70 -29.23 4.03 -454.94 -1.83 -31.06 16 9 C 0.20 9.50 2.11 44.25 0.09 9.60 16 10 H 0.05 2.56 7.44 -2.39 -0.02 2.54 16 11 C 0.04 2.11 4.49 29.85 0.13 2.25 16 12 C -0.53 -30.37 8.84 25.60 0.23 -30.15 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 14 C 0.01 0.59 5.46 84.66 0.46 1.05 16 15 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 C -0.10 -4.03 4.91 -19.87 -0.10 -4.12 16 21 C -0.12 -4.44 9.32 22.27 0.21 -4.23 16 22 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 23 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 24 C -0.12 -3.88 10.05 22.27 0.22 -3.65 16 25 C -0.14 -5.38 9.67 22.27 0.22 -5.16 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.19 2.02 8.01 -2.91 -0.02 1.99 16 32 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.40 15.27 8.56 -92.71 -0.79 14.48 16 34 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.12 4.14 7.73 -2.91 -0.02 4.12 16 38 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.11 4.30 8.04 -2.91 -0.02 4.28 16 Total: -1.00 -79.68 355.51 5.19 -74.49 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.22 Total: 28.61 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 4.70 Total: -24.81 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.55 Total: -86.58 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.21 Total: -38.55 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -79.68 5.19 -74.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493550373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.269 kcal (2) G-P(sol) polarization free energy of solvation -79.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds