Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34832 * 116.99909 * 179.97438 * 3 2 1 5 5 C 1.34413 * 119.99801 * 179.97438 * 4 3 2 6 6 C 1.41806 * 119.99792 * 179.97438 * 5 4 3 7 7 O 1.21737 * 119.99839 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00049 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00182 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47201 * 325.00246 * 9 8 6 11 11 C 1.53003 * 109.47232 * 205.00194 * 9 8 6 12 12 C 1.50702 * 109.46879 * 65.00061 * 11 9 8 13 13 H 1.07992 * 120.00105 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99747 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99730 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00081 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47134 * 59.99774 * 16 14 12 18 18 H 1.48495 * 109.47309 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47312 * 299.99760 * 16 14 12 20 20 C 1.50705 * 109.47011 * 85.00336 * 9 8 6 21 21 C 1.38227 * 119.99890 * 39.72577 * 20 9 8 22 22 C 1.38239 * 119.99513 * 179.79106 * 21 20 9 23 23 C 1.38227 * 120.00389 * 0.43804 * 22 21 20 24 24 C 1.38235 * 119.99759 * 359.81669 * 23 22 21 25 25 C 1.38231 * 119.99440 * 220.00228 * 20 9 8 26 26 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 31 31 H 1.07998 * 120.00087 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00112 * 0.02562 * 5 4 3 33 33 H 0.97005 * 119.99923 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.46989 * 184.99831 * 11 9 8 35 35 H 1.09000 * 109.46570 * 305.00066 * 11 9 8 36 36 H 0.97002 * 119.99809 * 179.97438 * 15 14 12 37 37 H 1.08002 * 120.00194 * 359.97438 * 21 20 9 38 38 H 1.08006 * 119.99606 * 180.27626 * 22 21 20 39 39 H 1.07999 * 120.00880 * 179.83461 * 23 22 21 40 40 H 1.08006 * 120.00354 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.00600 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5458 0.0005 5 6 3.8643 2.7879 0.0000 6 6 5.2701 2.9737 0.0012 7 8 6.0117 2.0083 0.0021 8 7 5.7852 4.2192 0.0002 9 6 7.2375 4.4112 0.0007 10 1 7.7078 3.6249 0.5912 11 6 7.5714 5.7747 0.6092 12 6 7.1667 5.7897 2.0608 13 1 6.7160 4.9145 2.5047 14 6 7.3709 6.9213 2.8217 15 7 7.9193 7.9873 2.2808 16 14 6.8686 6.9402 4.6207 17 1 7.6059 5.8785 5.3517 18 1 7.1928 8.2635 5.2113 19 1 5.4083 6.6934 4.7296 20 6 7.7525 4.3529 -1.4144 21 6 7.0319 4.9411 -2.4369 22 6 7.5065 4.8913 -3.7343 23 6 8.6970 4.2456 -4.0105 24 6 9.4150 3.6528 -2.9887 25 6 8.9426 3.7062 -1.6906 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 4.0085 0.6893 0.0014 32 1 3.2063 3.6443 -0.0004 33 1 5.1942 4.9884 -0.0010 34 1 8.6433 5.9557 0.5290 35 1 7.0301 6.5542 0.0729 36 1 8.0626 8.7835 2.8160 37 1 6.0996 5.4421 -2.2217 38 1 6.9457 5.3547 -4.5325 39 1 9.0665 4.2043 -5.0244 40 1 10.3455 3.1486 -3.2043 41 1 9.5036 3.2432 -0.8923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493550375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -46.836660 kcal Electronic energy + Delta-G solvation = -22159.323605 eV Core-core repulsion = 18811.448133 eV Total energy + Delta-G solvation = -3347.875472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71265 -38.99841 -38.22985 -35.13646 -32.82288 -32.65847 -31.29980 -30.45636 -30.13307 -28.68131 -25.08166 -23.59722 -22.71172 -22.20562 -21.85956 -19.84431 -19.42438 -17.81554 -16.89411 -16.13714 -16.11826 -15.91562 -15.72972 -14.84176 -14.63689 -14.47278 -14.05154 -13.80525 -13.23907 -13.19396 -12.95068 -12.79628 -12.60600 -12.44751 -12.23108 -12.05753 -11.50243 -11.37639 -11.28051 -11.08541 -10.86920 -10.67216 -10.58372 -10.39449 -9.71963 -9.39938 -9.23630 -8.63898 -8.47766 -8.40783 -8.21375 -8.11054 -6.04577 -4.07649 1.64680 1.84480 1.86213 2.91952 3.32387 3.36861 3.40215 3.92860 4.12814 4.38067 4.44850 4.62068 4.62694 4.88989 4.95159 5.26259 5.31567 5.31983 5.33455 5.42857 5.47644 5.60204 5.69696 5.79234 5.94274 5.97535 6.00103 6.22550 6.32888 6.42675 6.52314 6.65666 6.90443 6.91082 7.03394 7.18378 7.24653 7.46640 7.55140 7.70070 7.92544 8.27650 8.32823 8.92735 8.98197 9.57061 11.06038 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.005341 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.628656 B = 5241.607559 C = 7949.636563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.323 6.323 4 C 0.127 3.873 5 C -0.285 4.285 6 C 0.562 3.438 7 O -0.573 6.573 8 N -0.696 5.696 9 C 0.184 3.816 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.069 4.069 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.109 4.109 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.401 0.599 34 H 0.034 0.966 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.432 -12.038 -9.119 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.236 6.236 4 C 0.060 3.940 5 C -0.308 4.308 6 C 0.353 3.647 7 O -0.456 6.456 8 N -0.344 5.344 9 C 0.080 3.920 10 H 0.104 0.896 11 C -0.013 4.013 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.070 4.070 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.127 4.127 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.236 0.764 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.021 -12.364 -9.060 17.786 hybrid contribution -0.421 0.415 1.014 1.174 sum -9.442 -11.949 -8.046 17.224 Atomic orbital electron populations 1.21776 0.92757 1.02842 1.03707 1.23303 0.96172 0.80793 1.01907 1.86245 1.20737 1.29664 1.86924 1.22923 0.82772 0.98422 0.89918 1.20985 0.95679 0.97069 1.17045 1.16601 0.87786 0.83664 0.76651 1.90751 1.62128 1.40035 1.52721 1.45824 1.08199 1.07227 1.73140 1.20220 0.79293 1.02309 0.90211 0.89551 1.19383 0.98060 0.88395 0.95484 1.21120 1.40728 0.99047 0.94887 0.92392 1.24984 0.95142 0.95602 0.98411 1.69955 1.43473 1.03324 1.36455 0.86650 0.79072 0.77076 0.85181 1.20237 1.21339 1.20237 1.20570 0.94572 0.95230 0.96631 1.20923 0.99865 0.99382 0.92392 1.21038 0.96637 1.00141 0.96538 1.20979 0.95948 0.99894 0.98623 1.21034 0.99670 1.00371 0.93100 1.21019 0.96234 0.98968 0.96510 0.91377 0.91430 0.90336 0.91550 0.91494 0.84667 0.85379 0.76401 0.94824 0.95750 0.92856 0.86518 0.86781 0.86908 0.86668 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.58 16 2 C 0.05 0.42 6.85 37.16 0.25 0.68 16 3 O -0.32 -3.88 10.17 -16.23 -0.17 -4.05 16 4 C 0.13 1.73 9.91 29.38 0.29 2.02 16 5 C -0.29 -4.46 9.71 -39.57 -0.38 -4.85 16 6 C 0.56 10.69 7.52 -14.90 -0.11 10.57 16 7 O -0.57 -12.48 15.76 5.16 0.08 -12.40 16 8 N -0.70 -13.36 4.01 -57.78 -0.23 -13.59 16 9 C 0.18 3.90 2.12 -69.08 -0.15 3.76 16 10 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 11 C 0.02 0.59 4.50 -27.88 -0.13 0.47 16 12 C -0.52 -14.08 8.84 -34.44 -0.30 -14.39 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 21 C -0.11 -1.89 9.33 -39.58 -0.37 -2.26 16 22 C -0.13 -1.94 10.05 -39.59 -0.40 -2.33 16 23 C -0.14 -2.01 10.05 -39.59 -0.40 -2.41 16 24 C -0.12 -1.93 10.05 -39.58 -0.40 -2.32 16 25 C -0.11 -1.96 9.67 -39.58 -0.38 -2.35 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.14 1.77 7.38 -52.49 -0.39 1.39 16 32 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.40 7.13 8.56 -40.82 -0.35 6.78 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 1.93 7.71 -52.49 -0.40 1.53 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 41 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.38 357.73 -8.05 -40.43 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.14 Total: 7.34 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.70 Total: -14.25 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.50 Total: -38.87 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.08 Total: -16.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.38 -8.05 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493550375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.404 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds