Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34832 * 116.99909 * 179.97438 * 3 2 1 5 5 C 1.34413 * 119.99801 * 179.97438 * 4 3 2 6 6 C 1.41806 * 119.99792 * 179.97438 * 5 4 3 7 7 O 1.21737 * 119.99839 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00049 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00182 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47201 * 325.00246 * 9 8 6 11 11 C 1.53003 * 109.47232 * 205.00194 * 9 8 6 12 12 C 1.50702 * 109.46879 * 65.00061 * 11 9 8 13 13 H 1.07992 * 120.00105 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99747 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99730 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00081 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47134 * 59.99774 * 16 14 12 18 18 H 1.48495 * 109.47309 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47312 * 299.99760 * 16 14 12 20 20 C 1.50705 * 109.47011 * 85.00336 * 9 8 6 21 21 C 1.38227 * 119.99890 * 39.72577 * 20 9 8 22 22 C 1.38239 * 119.99513 * 179.79106 * 21 20 9 23 23 C 1.38227 * 120.00389 * 0.43804 * 22 21 20 24 24 C 1.38235 * 119.99759 * 359.81669 * 23 22 21 25 25 C 1.38231 * 119.99440 * 220.00228 * 20 9 8 26 26 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 31 31 H 1.07998 * 120.00087 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00112 * 0.02562 * 5 4 3 33 33 H 0.97005 * 119.99923 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.46989 * 184.99831 * 11 9 8 35 35 H 1.09000 * 109.46570 * 305.00066 * 11 9 8 36 36 H 0.97002 * 119.99809 * 179.97438 * 15 14 12 37 37 H 1.08002 * 120.00194 * 359.97438 * 21 20 9 38 38 H 1.08006 * 119.99606 * 180.27626 * 22 21 20 39 39 H 1.07999 * 120.00880 * 179.83461 * 23 22 21 40 40 H 1.08006 * 120.00354 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.00600 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5458 0.0005 5 6 3.8643 2.7879 0.0000 6 6 5.2701 2.9737 0.0012 7 8 6.0117 2.0083 0.0021 8 7 5.7852 4.2192 0.0002 9 6 7.2375 4.4112 0.0007 10 1 7.7078 3.6249 0.5912 11 6 7.5714 5.7747 0.6092 12 6 7.1667 5.7897 2.0608 13 1 6.7160 4.9145 2.5047 14 6 7.3709 6.9213 2.8217 15 7 7.9193 7.9873 2.2808 16 14 6.8686 6.9402 4.6207 17 1 7.6059 5.8785 5.3517 18 1 7.1928 8.2635 5.2113 19 1 5.4083 6.6934 4.7296 20 6 7.7525 4.3529 -1.4144 21 6 7.0319 4.9411 -2.4369 22 6 7.5065 4.8913 -3.7343 23 6 8.6970 4.2456 -4.0105 24 6 9.4150 3.6528 -2.9887 25 6 8.9426 3.7062 -1.6906 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 4.0085 0.6893 0.0014 32 1 3.2063 3.6443 -0.0004 33 1 5.1942 4.9884 -0.0010 34 1 8.6433 5.9557 0.5290 35 1 7.0301 6.5542 0.0729 36 1 8.0626 8.7835 2.8160 37 1 6.0996 5.4421 -2.2217 38 1 6.9457 5.3547 -4.5325 39 1 9.0665 4.2043 -5.0244 40 1 10.3455 3.1486 -3.2043 41 1 9.5036 3.2432 -0.8923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493550375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -66.088222 kcal Electronic energy + Delta-G solvation = -22160.158415 eV Core-core repulsion = 18811.448133 eV Total energy + Delta-G solvation = -3348.710282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14786 -40.09879 -39.50527 -36.78603 -34.70138 -33.78081 -32.59257 -31.70391 -31.22683 -30.47766 -26.85737 -24.60429 -23.82655 -23.70618 -23.23366 -21.34165 -20.84717 -18.91385 -18.65780 -17.75903 -17.25274 -17.13183 -16.90282 -16.44995 -16.21067 -15.84117 -15.44040 -15.07116 -14.67818 -14.40238 -14.17480 -14.10627 -13.86387 -13.66748 -13.46708 -13.35291 -13.03777 -12.90978 -12.63292 -12.44575 -12.27356 -12.13990 -11.92423 -11.85910 -11.57575 -11.33378 -10.95178 -10.57118 -10.04270 -9.74636 -9.57356 -9.47503 -8.19892 -6.30210 0.42806 0.53476 0.57327 1.40080 1.41733 1.49947 1.94832 2.40420 2.51482 2.75552 3.02989 3.14944 3.73463 4.01040 4.05314 4.07291 4.13856 4.22359 4.33519 4.35838 4.37647 4.56663 4.65658 4.68678 4.78274 4.80949 4.93298 4.95406 5.14160 5.16900 5.21754 5.26175 5.31121 5.44344 5.62613 5.64144 5.65683 5.78483 5.94755 6.17245 6.21791 6.24347 6.79099 6.82135 7.38298 7.43812 8.90811 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.005341 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.628656 B = 5241.607559 C = 7949.636563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.331 6.331 4 C 0.163 3.837 5 C -0.318 4.318 6 C 0.563 3.437 7 O -0.609 6.609 8 N -0.696 5.696 9 C 0.200 3.800 10 H 0.058 0.942 11 C 0.039 3.961 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.134 4.134 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.407 0.593 34 H 0.004 0.996 35 H 0.010 0.990 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 -13.215 -10.243 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.243 6.243 4 C 0.095 3.905 5 C -0.341 4.341 6 C 0.356 3.644 7 O -0.495 6.495 8 N -0.344 5.344 9 C 0.095 3.905 10 H 0.076 0.924 11 C 0.001 3.999 12 C -0.570 4.570 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.782 3.218 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.098 4.098 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.152 4.152 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.022 0.978 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.391 -13.545 -10.188 19.881 hybrid contribution -0.069 0.658 1.288 1.448 sum -10.460 -12.887 -8.900 18.833 Atomic orbital electron populations 1.21823 0.91322 1.04372 1.03327 1.23725 0.97322 0.78801 1.03410 1.86248 1.19563 1.32701 1.85739 1.22937 0.83605 0.97801 0.86166 1.20756 0.93809 0.98561 1.20931 1.17014 0.89002 0.82798 0.75608 1.90717 1.63250 1.40822 1.54729 1.45726 1.07325 1.07871 1.73452 1.19712 0.80532 0.98862 0.91421 0.92418 1.19119 0.95786 0.90206 0.94755 1.21387 1.40538 0.98893 0.96140 0.92925 1.25793 0.95047 0.95177 1.02781 1.70069 1.44507 1.03929 1.38141 0.85619 0.79088 0.77215 0.79834 1.19955 1.20668 1.19201 1.20456 0.95906 0.97664 0.95758 1.21069 1.00076 0.99702 0.93238 1.21435 0.97103 0.99557 0.96171 1.21468 0.95090 0.97978 1.00177 1.21395 1.00719 0.99966 0.92017 1.21183 0.96220 0.99819 0.98007 0.91918 0.91668 0.87828 0.89910 0.90219 0.84105 0.84231 0.75799 0.97795 0.97120 0.92682 0.86389 0.83616 0.82990 0.83711 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.04 0.55 6.85 71.98 0.49 1.05 16 3 O -0.33 -7.33 10.17 -80.99 -0.82 -8.16 16 4 C 0.16 4.28 9.91 66.94 0.66 4.95 16 5 C -0.32 -9.95 9.71 22.28 0.22 -9.73 16 6 C 0.56 22.06 7.52 85.12 0.64 22.70 16 7 O -0.61 -27.45 15.76 -4.47 -0.07 -27.52 16 8 N -0.70 -27.99 4.01 -454.92 -1.82 -29.82 16 9 C 0.20 9.02 2.12 44.25 0.09 9.11 16 10 H 0.06 2.88 7.44 -2.39 -0.02 2.87 16 11 C 0.04 2.03 4.50 29.85 0.13 2.16 16 12 C -0.53 -29.90 8.84 25.60 0.23 -29.68 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.01 0.60 5.46 84.66 0.46 1.06 16 15 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 16 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.10 -3.89 4.91 -19.87 -0.10 -3.99 16 21 C -0.12 -4.34 9.33 22.27 0.21 -4.13 16 22 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 23 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.13 -4.96 9.67 22.27 0.22 -4.75 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.14 3.54 7.38 -2.91 -0.02 3.51 16 32 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.41 15.17 8.56 -92.70 -0.79 14.38 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.12 4.00 7.71 -2.91 -0.02 3.98 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.11 4.17 8.04 -2.91 -0.02 4.15 16 Total: -1.00 -71.96 357.73 4.48 -67.48 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.22 Total: 28.59 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.67 Total: -22.04 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -1.54 Total: -84.81 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.89 Total: -35.68 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.96 4.48 -67.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493550375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.396 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds