Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20756 * 120.00600 * 2 1 4 4 C 1.50703 * 119.99466 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.46876 * 45.00901 * 4 2 1 6 6 C 1.52995 * 109.47702 * 285.00190 * 4 2 1 7 7 C 1.50696 * 109.47334 * 175.00012 * 6 4 2 8 8 C 1.38236 * 120.00013 * 269.73266 * 7 6 4 9 9 C 1.38243 * 119.99776 * 179.76520 * 8 7 6 10 10 C 1.38230 * 119.99956 * 0.50831 * 9 8 7 11 11 C 1.38234 * 120.00064 * 359.74284 * 10 9 8 12 12 C 1.38235 * 119.99848 * 89.99979 * 7 6 4 13 13 N 1.46506 * 109.46573 * 165.00307 * 4 2 1 14 14 C 1.34773 * 119.99968 * 274.99986 * 13 4 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 4 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 4 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 13 18 18 C 1.50696 * 109.46969 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00408 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99883 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99834 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47112 * 89.99781 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00049 * 22 20 18 25 25 H 1.48494 * 109.47201 * 330.00023 * 22 20 18 26 26 H 1.08996 * 109.47468 * 240.00206 * 1 2 3 27 27 H 1.09006 * 109.46541 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47199 * 119.99875 * 1 2 3 29 29 H 1.09001 * 109.47417 * 295.00664 * 6 4 2 30 30 H 1.09007 * 109.46847 * 55.00115 * 6 4 2 31 31 H 1.07994 * 120.00235 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.99663 * 180.22288 * 9 8 7 33 33 H 1.08000 * 120.00147 * 179.72328 * 10 9 8 34 34 H 1.08006 * 120.00135 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.00414 * 0.02562 * 12 7 6 36 36 H 0.96998 * 119.99507 * 95.00841 * 13 4 2 37 37 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 38 38 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 39 39 H 1.09000 * 109.46986 * 300.00089 * 17 16 14 40 40 H 1.09002 * 109.46857 * 60.00224 * 17 16 14 41 41 H 0.96999 * 119.99905 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.8128 -1.9833 -0.7259 6 6 2.1921 -1.9330 1.3941 7 6 2.8389 -3.2938 1.3643 8 6 2.0798 -4.4139 1.0812 9 6 2.6742 -5.6616 1.0491 10 6 4.0255 -5.7904 1.3104 11 6 4.7835 -4.6709 1.5986 12 6 4.1902 -3.4225 1.6255 13 7 3.6601 -1.0612 -0.3570 14 6 4.0237 -1.0004 -1.6533 15 8 3.1931 -1.1526 -2.5239 16 6 5.4635 -0.7500 -2.0211 17 6 5.6057 -0.7353 -3.5444 18 6 7.0454 -0.4842 -3.9121 19 1 7.7851 -0.3491 -3.1369 20 6 7.4183 -0.4271 -5.2384 21 7 6.5175 -0.5911 -6.1823 22 14 9.2030 -0.1166 -5.6942 23 1 9.9181 -1.4132 -5.8063 24 1 9.2647 0.5969 -6.9951 25 1 9.8450 0.7135 -4.6435 26 1 -0.3634 -0.5138 0.8899 27 1 -0.3632 1.0278 -0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 2.7177 -1.2963 2.1057 30 1 1.1497 -2.0328 1.6969 31 1 1.0232 -4.3138 0.8818 32 1 2.0819 -6.5362 0.8244 33 1 4.4890 -6.7656 1.2898 34 1 5.8392 -4.7715 1.8032 35 1 4.7824 -2.5481 1.8514 36 1 4.3250 -0.9435 0.3394 37 1 5.7795 0.2119 -1.6174 38 1 6.0876 -1.5411 -1.6055 39 1 5.2896 -1.6972 -3.9481 40 1 4.9816 0.0559 -3.9599 41 1 6.7797 -0.5506 -7.1153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515195870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = -66.938016 kcal Electronic energy + Delta-G solvation = -22508.628732 eV Core-core repulsion = 19159.881599 eV Total energy + Delta-G solvation = -3348.747132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37522 -39.15046 -38.44894 -35.33249 -33.40951 -32.50265 -31.08363 -31.00719 -30.62270 -28.39628 -25.77173 -24.37680 -22.77345 -21.72333 -21.33049 -19.65249 -19.58966 -17.11693 -16.84707 -16.39619 -16.19109 -15.71126 -15.21423 -15.14646 -14.78413 -14.51978 -14.42657 -14.17115 -13.56217 -13.25129 -13.18457 -13.00599 -12.63569 -12.47704 -12.20160 -12.16238 -12.01047 -11.67232 -11.28971 -11.16030 -11.10237 -10.90325 -10.56891 -10.06995 -9.91184 -9.63358 -9.15987 -9.05733 -8.99254 -8.90669 -8.63737 -8.28319 -5.92549 -3.96600 1.17560 1.27622 1.93546 3.21744 3.35755 3.39588 3.42481 3.45806 3.62685 4.04882 4.50430 4.55262 4.61731 4.74650 4.86329 4.95790 4.97139 5.02000 5.18437 5.23295 5.32983 5.36554 5.42439 5.47290 5.55627 5.75465 5.82169 5.88998 5.90033 6.27398 6.30326 6.31635 6.38443 6.41856 6.63598 6.86007 6.93646 7.48165 7.78105 7.86861 7.90912 8.11116 8.42655 8.78699 9.11780 9.66598 11.18544 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004193 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.367644 B = 6675.645191 C = 8069.648377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.342 3.658 3 O -0.442 6.442 4 C 0.103 3.897 5 H 0.115 0.885 6 C -0.079 4.079 7 C -0.081 4.081 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.122 4.122 11 C -0.116 4.116 12 C -0.108 4.108 13 N -0.725 5.725 14 C 0.516 3.484 15 O -0.536 6.536 16 C -0.128 4.128 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 -7.784 20.635 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.214 3.786 3 O -0.313 6.313 4 C -0.004 4.004 5 H 0.133 0.867 6 C -0.117 4.117 7 C -0.081 4.081 8 C -0.133 4.133 9 C -0.137 4.137 10 C -0.140 4.140 11 C -0.134 4.134 12 C -0.126 4.126 13 N -0.378 5.378 14 C 0.305 3.695 15 O -0.412 6.412 16 C -0.168 4.168 17 C 0.001 3.999 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.233 0.767 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.504 -7.325 19.776 24.022 hybrid contribution 1.217 0.088 -0.076 1.222 sum -10.287 -7.237 19.700 23.373 Atomic orbital electron populations 1.22332 0.94247 1.05059 1.04511 1.25177 0.92107 0.90666 0.70648 1.90417 1.72006 1.34690 1.34230 1.21346 0.85134 0.95933 0.98012 0.86691 1.20749 1.02345 0.93603 0.95003 1.19633 0.94118 0.94274 1.00103 1.21024 0.99828 0.92268 1.00157 1.21130 0.95177 0.97409 0.99958 1.21171 0.94276 0.98764 0.99778 1.21168 0.99935 0.92647 0.99605 1.21030 0.94127 0.97581 0.99905 1.45984 1.07717 1.75580 1.08547 1.21575 0.92683 0.74213 0.80993 1.90650 1.53729 1.48482 1.48296 1.21850 0.89373 1.02112 1.03486 1.18887 0.96551 0.98477 0.86031 1.21223 0.93799 1.49473 0.91903 0.92621 1.25020 0.97318 0.95390 0.96627 1.69999 1.33189 1.49789 0.99916 0.86593 0.85248 0.78251 0.77877 1.20689 1.21229 1.19883 0.89051 0.89961 0.88669 0.89891 0.88928 0.86019 0.86125 0.86192 0.85945 0.86157 0.76680 0.90162 0.90256 0.95872 0.95870 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 10.21 36.01 0.37 -1.38 16 2 C 0.34 4.37 6.51 -29.03 -0.19 4.19 16 3 O -0.44 -7.50 17.23 6.00 0.10 -7.40 16 4 C 0.10 1.24 2.30 -69.08 -0.16 1.08 16 5 H 0.12 1.51 7.57 -51.93 -0.39 1.12 16 6 C -0.08 -0.65 4.87 -27.89 -0.14 -0.79 16 7 C -0.08 -0.78 4.95 -104.63 -0.52 -1.30 16 8 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 9 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 10 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 11 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 12 C -0.11 -1.08 9.10 -39.58 -0.36 -1.44 16 13 N -0.72 -10.66 4.06 -54.93 -0.22 -10.88 16 14 C 0.52 10.38 7.79 -10.98 -0.09 10.29 16 15 O -0.54 -12.90 15.64 5.56 0.09 -12.81 16 16 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 17 C 0.04 1.06 4.26 -27.89 -0.12 0.94 16 18 C -0.53 -15.29 9.11 -34.44 -0.31 -15.61 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.96 13.29 55.43 0.74 -27.22 16 22 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 26 H 0.09 0.48 7.73 -51.93 -0.40 0.08 16 27 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.09 0.52 7.64 -51.92 -0.40 0.12 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.12 1.02 7.57 -52.49 -0.40 0.62 16 36 H 0.40 4.85 7.83 -40.82 -0.32 4.53 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -37.43 354.56 -8.41 -45.84 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.09 Total: 1.46 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.34 Total: -11.38 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.51 Total: -38.10 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.19 Total: -20.21 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.43 -8.41 -45.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515195870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.097 kcal (2) G-P(sol) polarization free energy of solvation -37.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds