Wall clock time and date at job start Tue Mar 31 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20756 * 120.00600 * 2 1 4 4 C 1.50703 * 119.99466 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.46876 * 45.00901 * 4 2 1 6 6 C 1.52995 * 109.47702 * 285.00190 * 4 2 1 7 7 C 1.50696 * 109.47334 * 175.00012 * 6 4 2 8 8 C 1.38236 * 120.00013 * 269.73266 * 7 6 4 9 9 C 1.38243 * 119.99776 * 179.76520 * 8 7 6 10 10 C 1.38230 * 119.99956 * 0.50831 * 9 8 7 11 11 C 1.38234 * 120.00064 * 359.74284 * 10 9 8 12 12 C 1.38235 * 119.99848 * 89.99979 * 7 6 4 13 13 N 1.46506 * 109.46573 * 165.00307 * 4 2 1 14 14 C 1.34773 * 119.99968 * 274.99986 * 13 4 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 4 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 4 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 13 18 18 C 1.50696 * 109.46969 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00408 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99883 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99834 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47112 * 89.99781 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00049 * 22 20 18 25 25 H 1.48494 * 109.47201 * 330.00023 * 22 20 18 26 26 H 1.08996 * 109.47468 * 240.00206 * 1 2 3 27 27 H 1.09006 * 109.46541 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47199 * 119.99875 * 1 2 3 29 29 H 1.09001 * 109.47417 * 295.00664 * 6 4 2 30 30 H 1.09007 * 109.46847 * 55.00115 * 6 4 2 31 31 H 1.07994 * 120.00235 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.99663 * 180.22288 * 9 8 7 33 33 H 1.08000 * 120.00147 * 179.72328 * 10 9 8 34 34 H 1.08006 * 120.00135 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.00414 * 0.02562 * 12 7 6 36 36 H 0.96998 * 119.99507 * 95.00841 * 13 4 2 37 37 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 38 38 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 39 39 H 1.09000 * 109.46986 * 300.00089 * 17 16 14 40 40 H 1.09002 * 109.46857 * 60.00224 * 17 16 14 41 41 H 0.96999 * 119.99905 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.8128 -1.9833 -0.7259 6 6 2.1921 -1.9330 1.3941 7 6 2.8389 -3.2938 1.3643 8 6 2.0798 -4.4139 1.0812 9 6 2.6742 -5.6616 1.0491 10 6 4.0255 -5.7904 1.3104 11 6 4.7835 -4.6709 1.5986 12 6 4.1902 -3.4225 1.6255 13 7 3.6601 -1.0612 -0.3570 14 6 4.0237 -1.0004 -1.6533 15 8 3.1931 -1.1526 -2.5239 16 6 5.4635 -0.7500 -2.0211 17 6 5.6057 -0.7353 -3.5444 18 6 7.0454 -0.4842 -3.9121 19 1 7.7851 -0.3491 -3.1369 20 6 7.4183 -0.4271 -5.2384 21 7 6.5175 -0.5911 -6.1823 22 14 9.2030 -0.1166 -5.6942 23 1 9.9181 -1.4132 -5.8063 24 1 9.2647 0.5969 -6.9951 25 1 9.8450 0.7135 -4.6435 26 1 -0.3634 -0.5138 0.8899 27 1 -0.3632 1.0278 -0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 2.7177 -1.2963 2.1057 30 1 1.1497 -2.0328 1.6969 31 1 1.0232 -4.3138 0.8818 32 1 2.0819 -6.5362 0.8244 33 1 4.4890 -6.7656 1.2898 34 1 5.8392 -4.7715 1.8032 35 1 4.7824 -2.5481 1.8514 36 1 4.3250 -0.9435 0.3394 37 1 5.7795 0.2119 -1.6174 38 1 6.0876 -1.5411 -1.6055 39 1 5.2896 -1.6972 -3.9481 40 1 4.9816 0.0559 -3.9599 41 1 6.7797 -0.5506 -7.1153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515195870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:41 Heat of formation + Delta-G solvation = -91.335114 kcal Electronic energy + Delta-G solvation = -22509.686669 eV Core-core repulsion = 19159.881599 eV Total energy + Delta-G solvation = -3349.805070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51638 -39.97819 -39.84532 -36.46453 -35.56774 -33.71124 -32.81911 -31.75550 -31.59710 -29.35779 -27.62729 -25.43001 -23.74647 -23.36592 -22.07947 -21.24485 -20.64038 -18.86857 -17.87505 -17.60290 -17.37438 -17.19034 -16.48327 -16.23778 -15.98648 -15.89042 -15.65905 -15.37576 -14.74922 -14.25103 -14.21853 -14.14888 -13.92755 -13.76641 -13.33594 -13.25529 -13.12915 -12.83526 -12.82586 -12.55173 -12.47829 -11.98782 -11.95632 -11.80381 -11.66698 -11.33059 -11.24908 -10.76464 -10.58234 -9.97412 -9.73969 -9.54217 -8.19413 -6.33710 0.44995 0.57055 0.95462 1.40585 1.43834 1.54797 1.66186 2.15200 2.42973 2.87298 3.13236 3.13446 3.81729 3.86220 3.96534 4.09518 4.18074 4.21953 4.24467 4.35132 4.45824 4.51080 4.56433 4.59237 4.65019 4.69684 4.82744 4.89789 5.03323 5.12759 5.21156 5.22592 5.38190 5.47865 5.60020 5.62254 5.69475 5.72249 5.82750 6.15943 6.18335 6.47518 6.54085 6.83928 7.28206 7.36519 8.93482 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004193 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.367644 B = 6675.645191 C = 8069.648377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.340 3.660 3 O -0.493 6.493 4 C 0.098 3.902 5 H 0.107 0.893 6 C -0.068 4.068 7 C -0.093 4.093 8 C -0.123 4.123 9 C -0.132 4.132 10 C -0.136 4.136 11 C -0.133 4.133 12 C -0.124 4.124 13 N -0.704 5.704 14 C 0.516 3.484 15 O -0.586 6.586 16 C -0.120 4.120 17 C 0.046 3.954 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.975 3.025 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.257 1.257 26 H 0.135 0.865 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.413 0.587 37 H 0.096 0.904 38 H 0.105 0.895 39 H -0.016 1.016 40 H -0.022 1.022 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 -8.136 22.819 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.217 3.783 3 O -0.368 6.368 4 C -0.008 4.008 5 H 0.124 0.876 6 C -0.105 4.105 7 C -0.093 4.093 8 C -0.141 4.141 9 C -0.150 4.150 10 C -0.154 4.154 11 C -0.151 4.151 12 C -0.142 4.142 13 N -0.356 5.356 14 C 0.305 3.695 15 O -0.466 6.466 16 C -0.160 4.160 17 C 0.008 3.992 18 C -0.582 4.582 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.181 1.181 26 H 0.153 0.847 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.250 0.750 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.003 0.997 40 H -0.003 1.003 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.199 -7.693 22.043 25.894 hybrid contribution 1.051 0.132 -0.720 1.281 sum -10.148 -7.561 21.323 24.796 Atomic orbital electron populations 1.22374 0.90679 1.05709 1.06838 1.25783 0.94172 0.89825 0.68559 1.90412 1.73285 1.36136 1.36987 1.21648 0.82933 0.96033 1.00213 0.87565 1.20780 1.04784 0.92578 0.92348 1.19829 0.94159 0.95008 1.00278 1.21374 1.01058 0.92148 0.99534 1.21452 0.95396 0.98340 0.99845 1.21461 0.94747 0.99435 0.99743 1.21425 1.00692 0.92987 1.00013 1.21305 0.94710 0.98045 1.00111 1.45716 1.09769 1.73288 1.06867 1.21254 0.91703 0.74175 0.82391 1.90630 1.54618 1.51212 1.50122 1.21620 0.91382 1.03982 0.98986 1.18649 0.95545 0.94619 0.90380 1.21696 0.94513 1.49251 0.92780 0.90762 1.26139 1.02873 0.94754 0.96547 1.70177 1.36163 1.50913 1.00475 0.85308 0.78450 0.78671 0.77743 1.19464 1.21056 1.18051 0.84706 0.90280 0.87974 0.88627 0.85303 0.83886 0.84535 0.84977 0.85028 0.85090 0.74975 0.88570 0.87728 0.99747 1.00334 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 10.21 71.24 0.73 -2.18 16 2 C 0.34 8.26 6.51 29.10 0.19 8.45 16 3 O -0.49 -16.62 17.23 -1.44 -0.02 -16.64 16 4 C 0.10 2.20 2.30 44.24 0.10 2.30 16 5 H 0.11 2.68 7.57 -2.39 -0.02 2.67 16 6 C -0.07 -0.90 4.87 29.85 0.15 -0.75 16 7 C -0.09 -1.58 4.95 -19.87 -0.10 -1.67 16 8 C -0.12 -2.03 9.70 22.27 0.22 -1.82 16 9 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 10 C -0.14 -2.49 10.05 22.27 0.22 -2.26 16 11 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 12 C -0.12 -2.26 9.10 22.27 0.20 -2.06 16 13 N -0.70 -20.12 4.06 -446.09 -1.81 -21.94 16 14 C 0.52 21.10 7.79 87.66 0.68 21.78 16 15 O -0.59 -29.41 15.64 -3.04 -0.05 -29.46 16 16 C -0.12 -5.17 5.64 29.85 0.17 -5.00 16 17 C 0.05 2.66 4.26 29.85 0.13 2.78 16 18 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 19 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 20 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 21 N -0.94 -60.71 13.29 21.45 0.28 -60.42 16 22 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 26 H 0.13 0.79 7.73 -2.39 -0.02 0.77 16 27 H 0.08 1.25 8.12 -2.38 -0.02 1.23 16 28 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.13 0.83 7.64 -2.38 -0.02 0.81 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 1.97 7.57 -2.91 -0.02 1.95 16 36 H 0.41 9.38 7.83 -92.71 -0.73 8.65 16 37 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 39 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 40 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 41 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -85.99 354.56 4.55 -81.44 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.30 Total: 16.19 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 3.83 Total: -16.49 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.53 Total: -82.36 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.07 Total: -46.10 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -85.99 4.55 -81.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515195870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.891 kcal (2) G-P(sol) polarization free energy of solvation -85.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds