Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 120.00045 * 2 1 4 4 C 1.50699 * 120.00041 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.46963 * 319.99650 * 4 2 1 6 6 C 1.52997 * 109.47337 * 79.99959 * 4 2 1 7 7 C 1.50701 * 109.47212 * 184.99952 * 6 4 2 8 8 C 1.38233 * 120.00099 * 269.72808 * 7 6 4 9 9 C 1.38239 * 119.99655 * 179.76882 * 8 7 6 10 10 C 1.38230 * 120.00228 * 0.50243 * 9 8 7 11 11 C 1.38238 * 119.99995 * 359.75228 * 10 9 8 12 12 C 1.38238 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.46497 * 109.47310 * 200.00295 * 4 2 1 14 14 C 1.34774 * 120.00444 * 84.99467 * 13 4 2 15 15 O 1.21282 * 119.99907 * 0.02562 * 14 13 4 16 16 C 1.50696 * 120.00466 * 180.02562 * 14 13 4 17 17 C 1.52999 * 109.47708 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47416 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99801 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47113 * 59.99841 * 22 20 18 24 24 H 1.48502 * 109.46878 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47219 * 299.99883 * 22 20 18 26 26 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47014 * 299.99627 * 1 2 3 28 28 H 1.09001 * 109.47052 * 59.99497 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99954 * 6 4 2 30 30 H 1.09001 * 109.46832 * 305.00144 * 6 4 2 31 31 H 1.08003 * 119.99927 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.99431 * 180.23215 * 9 8 7 33 33 H 1.07997 * 120.00220 * 179.73036 * 10 9 8 34 34 H 1.08002 * 119.99952 * 179.97438 * 11 10 9 35 35 H 1.07991 * 120.00062 * 179.97438 * 12 11 10 36 36 H 0.97001 * 119.99762 * 264.99889 * 13 4 2 37 37 H 1.09004 * 109.47221 * 300.00615 * 16 14 13 38 38 H 1.09002 * 109.47090 * 59.99722 * 16 14 13 39 39 H 1.09003 * 109.46561 * 299.99877 * 17 16 14 40 40 H 1.08993 * 109.47324 * 59.99633 * 17 16 14 41 41 H 0.97008 * 120.00142 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0136 0.6597 6 6 2.2986 -1.8714 -1.4214 7 6 2.9437 -3.2332 -1.4022 8 6 4.3104 -3.3531 -1.5717 9 6 4.9026 -4.6020 -1.5493 10 6 4.1270 -5.7317 -1.3679 11 6 2.7596 -5.6122 -1.2037 12 6 2.1680 -4.3629 -1.2204 13 7 3.6287 -1.0793 0.4720 14 6 3.8933 -1.0757 1.7935 15 8 2.9988 -1.2598 2.5915 16 6 5.3005 -0.8429 2.2796 17 6 5.3262 -0.8889 3.8087 18 6 6.7335 -0.6554 4.2948 19 1 7.5299 -0.4911 3.5841 20 6 7.0041 -0.6516 5.6467 21 7 6.0341 -0.8513 6.5120 22 14 8.7486 -0.3630 6.2492 23 1 9.2186 0.9671 5.7855 24 1 8.7733 -0.4075 7.7334 25 1 9.6405 -1.4196 5.7078 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 2.8755 -1.2051 -2.0628 30 1 1.2823 -1.9561 -1.8061 31 1 4.9158 -2.4708 -1.7182 32 1 5.9709 -4.6953 -1.6780 33 1 4.5892 -6.7077 -1.3548 34 1 2.1535 -6.4949 -1.0624 35 1 1.0997 -4.2696 -1.0925 36 1 4.3442 -0.9323 -0.1663 37 1 5.9553 -1.6184 1.8820 38 1 5.6456 0.1335 1.9393 39 1 4.6715 -0.1135 4.2065 40 1 4.9813 -1.8653 4.1486 41 1 6.2244 -0.8482 7.4633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515195871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -66.941758 kcal Electronic energy + Delta-G solvation = -22504.478592 eV Core-core repulsion = 19155.731297 eV Total energy + Delta-G solvation = -3348.747295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37631 -39.14805 -38.46342 -35.32481 -33.41269 -32.49574 -31.08997 -31.00782 -30.61393 -28.42471 -25.77056 -24.35612 -22.77064 -21.72768 -21.31426 -19.65580 -19.61255 -17.10688 -16.84876 -16.41172 -16.16721 -15.70741 -15.20955 -15.13628 -14.81436 -14.52833 -14.43100 -14.17727 -13.55898 -13.26166 -13.18960 -12.97908 -12.58954 -12.47251 -12.21996 -12.16988 -12.03777 -11.65810 -11.28816 -11.16067 -11.10781 -10.88535 -10.59251 -10.08228 -9.91130 -9.63754 -9.16897 -9.05697 -9.00192 -8.90566 -8.63220 -8.28234 -5.92567 -3.96777 1.17735 1.27833 1.91925 3.20899 3.36964 3.39444 3.41783 3.44928 3.62993 4.04277 4.50315 4.56012 4.62383 4.76000 4.86560 4.96000 4.96840 5.02382 5.19596 5.28528 5.31921 5.36234 5.42287 5.47910 5.56185 5.74809 5.81001 5.87838 5.90240 6.26985 6.29702 6.31825 6.38648 6.42118 6.63014 6.86208 6.93155 7.47013 7.77527 7.86404 7.90483 8.10847 8.42349 8.77808 9.11345 9.66409 11.18443 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.004193 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.038197 B = 6676.885198 C = 8064.719325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.344 3.656 3 O -0.445 6.445 4 C 0.103 3.897 5 H 0.115 0.885 6 C -0.079 4.079 7 C -0.081 4.081 8 C -0.108 4.108 9 C -0.115 4.115 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.115 4.115 13 N -0.725 5.725 14 C 0.516 3.484 15 O -0.536 6.536 16 C -0.128 4.128 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.399 0.601 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 -6.825 -21.464 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.217 3.783 3 O -0.317 6.317 4 C -0.004 4.004 5 H 0.133 0.867 6 C -0.117 4.117 7 C -0.081 4.081 8 C -0.127 4.127 9 C -0.133 4.133 10 C -0.140 4.140 11 C -0.137 4.137 12 C -0.133 4.133 13 N -0.378 5.378 14 C 0.305 3.695 15 O -0.411 6.411 16 C -0.168 4.168 17 C 0.001 3.999 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.233 0.767 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.971 -6.410 -20.655 23.815 hybrid contribution 1.215 0.103 0.173 1.232 sum -8.756 -6.307 -20.482 23.151 Atomic orbital electron populations 1.22254 0.94262 1.04651 1.04783 1.25190 0.92110 0.90639 0.70383 1.90410 1.71930 1.34793 1.34534 1.21399 0.86005 0.96257 0.96762 0.86747 1.20719 1.02461 0.93892 0.94602 1.19635 0.93945 0.94253 1.00271 1.21032 0.94065 0.97647 0.99908 1.21165 0.99966 0.92582 0.99634 1.21171 0.94089 0.98694 1.00039 1.21130 0.95096 0.97408 1.00040 1.21022 0.99761 0.92183 1.00310 1.45998 1.08198 1.75480 1.08166 1.21587 0.92888 0.74272 0.80798 1.90652 1.48218 1.47995 1.54257 1.21851 0.90098 1.02190 1.02695 1.18883 0.96789 0.98478 0.85763 1.21184 0.93956 1.49538 0.91802 0.92672 1.25014 0.96990 0.95343 0.96974 1.69991 1.31639 1.49449 1.01820 0.86655 0.84967 0.78720 0.77599 1.20247 1.21286 1.20265 0.89978 0.88754 0.89107 0.89869 0.88922 0.86151 0.85946 0.86192 0.86123 0.86026 0.76655 0.90240 0.90160 0.95887 0.95859 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 10.33 36.01 0.37 -1.40 16 2 C 0.34 4.41 6.47 -29.04 -0.19 4.23 16 3 O -0.44 -7.46 17.30 6.00 0.10 -7.35 16 4 C 0.10 1.24 2.21 -69.09 -0.15 1.09 16 5 H 0.11 1.51 7.58 -51.93 -0.39 1.11 16 6 C -0.08 -0.66 4.87 -27.88 -0.14 -0.80 16 7 C -0.08 -0.79 4.95 -104.62 -0.52 -1.30 16 8 C -0.11 -1.08 9.11 -39.58 -0.36 -1.44 16 9 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 10 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 11 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 12 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 13 N -0.72 -10.66 4.11 -54.94 -0.23 -10.89 16 14 C 0.52 10.33 7.79 -10.99 -0.09 10.24 16 15 O -0.54 -12.83 15.64 5.56 0.09 -12.74 16 16 C -0.13 -2.73 5.64 -27.89 -0.16 -2.89 16 17 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 18 C -0.53 -15.29 9.11 -34.44 -0.31 -15.61 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.92 13.29 55.43 0.74 -27.18 16 22 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H 0.08 0.52 8.00 -51.93 -0.42 0.11 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.12 1.02 7.60 -52.48 -0.40 0.63 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.40 4.87 7.85 -40.82 -0.32 4.55 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -37.15 355.47 -8.43 -45.58 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.13 Total: 1.62 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.33 Total: -11.42 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.51 Total: -38.07 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.19 Total: -20.10 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.15 -8.43 -45.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515195871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.361 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds