Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 120.00045 * 2 1 4 4 C 1.50699 * 120.00041 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.46963 * 319.99650 * 4 2 1 6 6 C 1.52997 * 109.47337 * 79.99959 * 4 2 1 7 7 C 1.50701 * 109.47212 * 184.99952 * 6 4 2 8 8 C 1.38233 * 120.00099 * 269.72808 * 7 6 4 9 9 C 1.38239 * 119.99655 * 179.76882 * 8 7 6 10 10 C 1.38230 * 120.00228 * 0.50243 * 9 8 7 11 11 C 1.38238 * 119.99995 * 359.75228 * 10 9 8 12 12 C 1.38238 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.46497 * 109.47310 * 200.00295 * 4 2 1 14 14 C 1.34774 * 120.00444 * 84.99467 * 13 4 2 15 15 O 1.21282 * 119.99907 * 0.02562 * 14 13 4 16 16 C 1.50696 * 120.00466 * 180.02562 * 14 13 4 17 17 C 1.52999 * 109.47708 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47416 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99801 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47113 * 59.99841 * 22 20 18 24 24 H 1.48502 * 109.46878 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47219 * 299.99883 * 22 20 18 26 26 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47014 * 299.99627 * 1 2 3 28 28 H 1.09001 * 109.47052 * 59.99497 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99954 * 6 4 2 30 30 H 1.09001 * 109.46832 * 305.00144 * 6 4 2 31 31 H 1.08003 * 119.99927 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.99431 * 180.23215 * 9 8 7 33 33 H 1.07997 * 120.00220 * 179.73036 * 10 9 8 34 34 H 1.08002 * 119.99952 * 179.97438 * 11 10 9 35 35 H 1.07991 * 120.00062 * 179.97438 * 12 11 10 36 36 H 0.97001 * 119.99762 * 264.99889 * 13 4 2 37 37 H 1.09004 * 109.47221 * 300.00615 * 16 14 13 38 38 H 1.09002 * 109.47090 * 59.99722 * 16 14 13 39 39 H 1.09003 * 109.46561 * 299.99877 * 17 16 14 40 40 H 1.08993 * 109.47324 * 59.99633 * 17 16 14 41 41 H 0.97008 * 120.00142 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0136 0.6597 6 6 2.2986 -1.8714 -1.4214 7 6 2.9437 -3.2332 -1.4022 8 6 4.3104 -3.3531 -1.5717 9 6 4.9026 -4.6020 -1.5493 10 6 4.1270 -5.7317 -1.3679 11 6 2.7596 -5.6122 -1.2037 12 6 2.1680 -4.3629 -1.2204 13 7 3.6287 -1.0793 0.4720 14 6 3.8933 -1.0757 1.7935 15 8 2.9988 -1.2598 2.5915 16 6 5.3005 -0.8429 2.2796 17 6 5.3262 -0.8889 3.8087 18 6 6.7335 -0.6554 4.2948 19 1 7.5299 -0.4911 3.5841 20 6 7.0041 -0.6516 5.6467 21 7 6.0341 -0.8513 6.5120 22 14 8.7486 -0.3630 6.2492 23 1 9.2186 0.9671 5.7855 24 1 8.7733 -0.4075 7.7334 25 1 9.6405 -1.4196 5.7078 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 2.8755 -1.2051 -2.0628 30 1 1.2823 -1.9561 -1.8061 31 1 4.9158 -2.4708 -1.7182 32 1 5.9709 -4.6953 -1.6780 33 1 4.5892 -6.7077 -1.3548 34 1 2.1535 -6.4949 -1.0624 35 1 1.0997 -4.2696 -1.0925 36 1 4.3442 -0.9323 -0.1663 37 1 5.9553 -1.6184 1.8820 38 1 5.6456 0.1335 1.9393 39 1 4.6715 -0.1135 4.2065 40 1 4.9813 -1.8653 4.1486 41 1 6.2244 -0.8482 7.4633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515195871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -90.964343 kcal Electronic energy + Delta-G solvation = -22505.520289 eV Core-core repulsion = 19155.731297 eV Total energy + Delta-G solvation = -3349.788992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51889 -39.98245 -39.85315 -36.46118 -35.56504 -33.70415 -32.81799 -31.76118 -31.59951 -29.38715 -27.63090 -25.41136 -23.74458 -23.36716 -22.06985 -21.24614 -20.66649 -18.86563 -17.86847 -17.61102 -17.38218 -17.16860 -16.48677 -16.23958 -15.97783 -15.88797 -15.69660 -15.38425 -14.75105 -14.24964 -14.21952 -14.14642 -13.95899 -13.74131 -13.29607 -13.25434 -13.08241 -12.92786 -12.79467 -12.55617 -12.50205 -11.99252 -11.94721 -11.80886 -11.66533 -11.34524 -11.26468 -10.76936 -10.57214 -9.97067 -9.74250 -9.54294 -8.18984 -6.33385 0.44578 0.56793 0.92771 1.40747 1.45676 1.53377 1.65637 2.15328 2.43252 2.86874 3.12594 3.13740 3.81489 3.86213 3.96209 4.10111 4.17785 4.21630 4.23929 4.34802 4.45882 4.51156 4.53710 4.63503 4.64634 4.68080 4.81872 4.89408 5.03348 5.10356 5.19707 5.22277 5.36879 5.47784 5.60282 5.61979 5.69202 5.71950 5.82916 6.16157 6.18010 6.45622 6.53768 6.83985 7.27604 7.36806 8.93619 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.004193 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.038197 B = 6676.885198 C = 8064.719325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.343 3.657 3 O -0.492 6.492 4 C 0.098 3.902 5 H 0.107 0.893 6 C -0.067 4.067 7 C -0.093 4.093 8 C -0.124 4.124 9 C -0.133 4.133 10 C -0.136 4.136 11 C -0.132 4.132 12 C -0.124 4.124 13 N -0.704 5.704 14 C 0.516 3.484 15 O -0.585 6.585 16 C -0.120 4.120 17 C 0.046 3.954 18 C -0.546 4.546 19 H 0.074 0.926 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.261 1.261 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.413 0.587 37 H 0.104 0.896 38 H 0.096 0.904 39 H -0.021 1.021 40 H -0.016 1.016 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -7.058 -23.525 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.219 3.781 3 O -0.368 6.368 4 C -0.008 4.008 5 H 0.125 0.875 6 C -0.105 4.105 7 C -0.093 4.093 8 C -0.142 4.142 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.150 4.150 12 C -0.141 4.141 13 N -0.357 5.357 14 C 0.304 3.696 15 O -0.465 6.465 16 C -0.160 4.160 17 C 0.008 3.992 18 C -0.583 4.583 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.186 1.186 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.122 0.878 38 H 0.115 0.885 39 H -0.003 1.003 40 H 0.003 0.997 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.451 -6.655 -22.799 25.561 hybrid contribution 0.989 0.118 0.771 1.260 sum -8.461 -6.537 -22.028 24.486 Atomic orbital electron populations 1.22304 0.90876 1.06877 1.05492 1.25765 0.94087 0.89836 0.68409 1.90404 1.73151 1.36137 1.37059 1.21698 0.83964 0.96282 0.98888 0.87540 1.20737 1.04738 0.93050 0.91934 1.19823 0.93997 0.94944 1.00493 1.21302 0.94639 0.98131 1.00088 1.21424 1.00745 0.92904 1.00010 1.21464 0.94556 0.99375 0.99964 1.21452 0.95335 0.98329 0.99878 1.21369 1.01005 0.92082 0.99688 1.45732 1.10266 1.73235 1.06438 1.21264 0.91777 0.74227 0.82306 1.90633 1.49177 1.50696 1.55959 1.21621 0.92071 1.04038 0.98243 1.18646 0.95597 0.94646 0.90284 1.21666 0.94731 1.49297 0.92653 0.90775 1.26131 1.02219 0.94683 0.97231 1.70172 1.34646 1.50606 1.02270 0.85369 0.78583 0.79421 0.76847 1.18841 1.21125 1.18564 0.87120 0.89623 0.86553 0.88723 0.85497 0.85092 0.85000 0.84940 0.84509 0.83935 0.74976 0.87751 0.88536 1.00303 0.99728 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 10.33 71.24 0.74 -2.28 16 2 C 0.34 8.34 6.47 29.10 0.19 8.53 16 3 O -0.49 -16.30 17.30 -1.46 -0.03 -16.32 16 4 C 0.10 2.22 2.21 44.24 0.10 2.31 16 5 H 0.11 2.69 7.58 -2.39 -0.02 2.67 16 6 C -0.07 -0.93 4.87 29.85 0.15 -0.79 16 7 C -0.09 -1.60 4.95 -19.86 -0.10 -1.70 16 8 C -0.12 -2.28 9.11 22.27 0.20 -2.07 16 9 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 10 C -0.14 -2.49 10.05 22.27 0.22 -2.26 16 11 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 12 C -0.12 -2.07 9.70 22.27 0.22 -1.85 16 13 N -0.70 -20.11 4.11 -446.11 -1.83 -21.94 16 14 C 0.52 20.96 7.79 87.66 0.68 21.64 16 15 O -0.58 -29.15 15.64 -3.03 -0.05 -29.20 16 16 C -0.12 -5.14 5.64 29.85 0.17 -4.98 16 17 C 0.05 2.66 4.26 29.85 0.13 2.79 16 18 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 19 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 20 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 21 N -0.94 -60.56 13.29 21.45 0.28 -60.27 16 22 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 26 H 0.11 1.03 8.00 -2.39 -0.02 1.01 16 27 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 30 H 0.13 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.13 1.99 7.60 -2.91 -0.02 1.97 16 32 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.14 1.66 8.06 -2.92 -0.02 1.64 16 36 H 0.41 9.42 7.85 -92.71 -0.73 8.69 16 37 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 38 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 39 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 40 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 41 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 Total: -1.00 -84.84 355.47 4.53 -80.31 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.29 Total: 16.89 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.83 Total: -16.66 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.55 Total: -82.22 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.07 Total: -45.52 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -84.84 4.53 -80.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515195871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.653 kcal (2) G-P(sol) polarization free energy of solvation -84.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds