Wall clock time and date at job start Tue Mar 31 2020 07:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99830 * 2 1 4 4 C 1.52999 * 109.46912 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46941 * 65.00181 * 4 3 2 6 6 C 1.36869 * 119.99864 * 264.42768 * 5 4 3 7 7 H 1.08009 * 120.00120 * 130.94065 * 6 5 4 8 8 C 1.39053 * 120.00407 * 310.94604 * 6 5 4 9 9 N 1.31362 * 119.99601 * 350.70358 * 8 6 5 10 10 Si 1.86800 * 120.00263 * 170.70380 * 8 6 5 11 11 H 1.48504 * 109.47200 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47180 * 120.00192 * 10 8 6 13 13 H 1.48506 * 109.46958 * 240.00256 * 10 8 6 14 14 C 1.34775 * 120.00344 * 84.43382 * 5 4 3 15 15 O 1.21597 * 119.99878 * 2.52798 * 14 5 4 16 16 C 1.47728 * 120.00050 * 182.52883 * 14 5 4 17 17 C 1.39663 * 120.14854 * 318.13451 * 16 14 5 18 18 C 1.37918 * 119.84090 * 179.71560 * 17 16 14 19 19 C 1.38403 * 120.15379 * 0.58890 * 18 17 16 20 20 C 1.38348 * 120.30190 * 359.66577 * 19 18 17 21 21 C 1.50703 * 119.92488 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.49493 * 8.64737 * 21 20 19 23 23 C 1.52997 * 60.00085 * 252.50856 * 22 21 20 24 24 C 1.37959 * 120.15392 * 0.05185 * 20 19 18 25 25 H 1.09003 * 109.46734 * 60.00481 * 1 2 3 26 26 H 1.08994 * 109.46805 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47271 * 300.00424 * 1 2 3 28 28 H 1.08996 * 109.47295 * 59.99811 * 3 2 1 29 29 H 1.08998 * 109.47121 * 299.99639 * 3 2 1 30 30 H 1.09000 * 109.47100 * 305.00191 * 4 3 2 31 31 H 1.09005 * 109.46669 * 184.99956 * 4 3 2 32 32 H 0.97001 * 119.99953 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.08039 * 0.02562 * 17 16 14 34 34 H 1.08007 * 119.92496 * 180.29894 * 18 17 16 35 35 H 1.08000 * 119.84605 * 179.69142 * 19 18 17 36 36 H 1.08999 * 115.55181 * 154.35019 * 21 20 19 37 37 H 1.08996 * 117.50221 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49990 * 145.01821 * 22 21 20 39 39 H 1.08992 * 117.49797 * 252.51204 * 23 22 21 40 40 H 1.08997 * 117.51756 * 107.48278 * 23 22 21 41 41 H 1.08003 * 120.07296 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2075 -0.7841 -1.3020 7 1 3.7785 -1.3757 -2.0972 8 6 4.9944 -1.3921 -0.3300 9 7 5.6638 -0.6563 0.5280 10 14 5.0996 -3.2552 -0.2444 11 1 4.2577 -3.8483 -1.3143 12 1 6.5101 -3.6804 -0.4308 13 1 4.6141 -3.7180 1.0806 14 6 4.1553 1.3205 -2.3519 15 8 3.9949 2.5245 -2.2950 16 6 4.5460 0.6869 -3.6280 17 6 5.5085 -0.3250 -3.6429 18 6 5.8643 -0.9162 -4.8371 19 6 5.2788 -0.5005 -6.0202 20 6 4.3285 0.5050 -6.0132 21 6 3.6960 0.9506 -7.3065 22 6 3.9915 0.1234 -8.5592 23 6 4.6211 1.5076 -8.3903 24 6 3.9590 1.1011 -4.8252 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1766 0.0902 32 1 6.2124 -1.0804 1.2063 33 1 5.9695 -0.6472 -2.7209 34 1 6.6050 -1.7022 -4.8496 35 1 5.5647 -0.9635 -6.9531 36 1 2.7032 1.3916 -7.2168 37 1 4.6430 -0.7433 -8.4479 38 1 3.1930 0.0200 -9.2939 39 1 4.2369 2.3147 -9.0139 40 1 5.6872 1.5521 -8.1679 41 1 3.2167 1.8856 -4.8212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517962456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:13 Heat of formation + Delta-G solvation = -40.217726 kcal Electronic energy + Delta-G solvation = -23244.684101 eV Core-core repulsion = 19897.095648 eV Total energy + Delta-G solvation = -3347.588454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13764 -39.84575 -38.57537 -37.30747 -36.65493 -33.56669 -32.20161 -31.74401 -30.35181 -27.31066 -26.75277 -25.08236 -24.41934 -23.30968 -22.83247 -21.87651 -20.71479 -18.97994 -17.94007 -17.42540 -17.26017 -16.98073 -16.55104 -16.28323 -16.05231 -15.94131 -15.44837 -15.25253 -14.79577 -14.63184 -14.33391 -13.69462 -13.56394 -13.34306 -13.15823 -12.93467 -12.88357 -12.66862 -12.60054 -12.51849 -12.12158 -12.01533 -11.85704 -11.82750 -11.47753 -11.25620 -11.00473 -10.59270 -10.42582 -9.75539 -9.38732 -9.31038 -8.25882 -6.09217 0.22753 0.53414 1.42991 1.47740 1.59607 2.04788 2.33178 2.74115 2.91444 2.99082 3.16115 3.27307 3.71882 3.98336 4.06453 4.12667 4.20565 4.23831 4.24540 4.41545 4.42855 4.48815 4.55250 4.57537 4.61945 4.72828 4.77786 4.83513 4.86282 4.99466 5.11627 5.18248 5.25284 5.27917 5.32398 5.50316 5.64238 5.69028 5.75564 6.04945 6.14399 6.36794 6.43651 7.13397 7.51567 7.96860 8.79299 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.005658 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.261433 B = 4947.498906 C = 5883.615413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.064 3.936 4 C 0.120 3.880 5 N -0.429 5.429 6 C -0.320 4.320 7 H 0.078 0.922 8 C 0.011 3.989 9 N -0.899 5.899 10 Si 0.975 3.025 11 H -0.261 1.261 12 H -0.273 1.273 13 H -0.280 1.280 14 C 0.500 3.500 15 O -0.636 6.636 16 C -0.116 4.116 17 C -0.079 4.079 18 C -0.130 4.130 19 C -0.105 4.105 20 C -0.066 4.066 21 C -0.137 4.137 22 C -0.159 4.159 23 C -0.165 4.165 24 C -0.092 4.092 25 H 0.037 0.963 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.271 0.729 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 -2.704 -11.602 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.003 4.003 5 N -0.145 5.145 6 C -0.448 4.448 7 H 0.096 0.904 8 C -0.191 4.191 9 N -0.537 5.537 10 Si 0.798 3.202 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.206 1.206 14 C 0.290 3.710 15 O -0.526 6.526 16 C -0.119 4.119 17 C -0.098 4.098 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.066 4.066 21 C -0.155 4.155 22 C -0.196 4.196 23 C -0.202 4.202 24 C -0.111 4.111 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.854 -2.330 -11.344 12.205 hybrid contribution -0.191 -0.177 0.958 0.993 sum -4.044 -2.507 -10.386 11.424 Atomic orbital electron populations 1.22898 0.80504 1.03452 1.00254 1.88056 1.20604 1.27705 1.95320 1.22821 0.94332 0.84695 0.99543 1.21326 0.91403 0.97665 0.89933 1.43308 1.56060 1.07671 1.07469 1.19276 1.29601 0.82121 1.13800 0.90438 1.26169 0.93589 1.03599 0.95789 1.69947 1.27798 1.37475 1.18457 0.85149 0.78264 0.78286 0.78465 1.18475 1.19813 1.20624 1.19117 0.79737 0.85787 0.86314 1.90553 1.59110 1.15826 1.87085 1.19880 1.00118 0.98945 0.92914 1.21619 0.95537 0.93297 0.99319 1.21377 1.01051 1.00830 0.91533 1.21403 0.95739 0.96270 0.98851 1.19194 0.97628 0.96731 0.93036 1.20990 1.00199 1.07026 0.87270 1.23178 1.03821 0.94934 0.97653 1.23096 0.98778 0.98007 1.00298 1.20929 0.99824 0.99140 0.91255 0.94445 0.88629 0.92769 0.91123 0.95252 0.89330 0.92488 0.91909 0.85956 0.83315 0.82733 0.87174 0.87530 0.86801 0.87135 0.88874 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -17.02 10.44 -148.98 -1.56 -18.57 16 3 C 0.06 2.72 6.24 71.98 0.45 3.17 16 4 C 0.12 6.05 5.25 86.38 0.45 6.50 16 5 N -0.43 -22.86 2.40 -638.93 -1.53 -24.40 16 6 C -0.32 -16.70 5.89 84.10 0.50 -16.21 16 7 H 0.08 4.10 7.22 -2.91 -0.02 4.08 16 8 C 0.01 0.57 4.89 84.96 0.42 0.99 16 9 N -0.90 -48.44 11.69 21.68 0.25 -48.18 16 10 Si 0.97 40.54 29.56 68.60 2.03 42.57 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 13 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.50 26.82 7.25 86.75 0.63 27.45 16 15 O -0.64 -36.68 16.60 -4.02 -0.07 -36.75 16 16 C -0.12 -5.38 5.30 -20.09 -0.11 -5.49 16 17 C -0.08 -3.35 8.08 22.54 0.18 -3.17 16 18 C -0.13 -4.25 10.03 22.23 0.22 -4.03 16 19 C -0.10 -2.99 9.29 22.34 0.21 -2.78 16 20 C -0.07 -2.08 5.61 -19.90 -0.11 -2.19 16 21 C -0.14 -3.29 6.04 -11.54 -0.07 -3.36 16 22 C -0.16 -2.73 9.86 30.59 0.30 -2.43 16 23 C -0.16 -3.13 10.16 30.59 0.31 -2.81 16 24 C -0.09 -3.70 9.34 22.54 0.21 -3.49 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 4.72 6.08 -2.39 -0.01 4.70 16 31 H 0.06 2.94 7.56 -2.38 -0.02 2.92 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.12 5.77 6.23 -2.91 -0.02 5.75 16 34 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.16 3.17 6.00 -2.91 -0.02 3.16 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.11 1.65 6.17 -2.39 -0.01 1.64 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -67.16 343.22 4.99 -62.17 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 1.02 Total: 28.98 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.84 Total: -5.82 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.28 Total: -72.58 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -1.62 Total: -55.32 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -67.16 4.99 -62.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517962456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.957 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds