Wall clock time and date at job start Tue Mar 31 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99356 * 2 1 4 4 C 1.38756 * 120.05961 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94425 * 180.02562 * 4 3 2 6 6 C 1.38278 * 120.05742 * 359.97438 * 5 4 3 7 7 C 1.38249 * 120.11225 * 0.04481 * 6 5 4 8 8 C 1.50701 * 119.97189 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47179 * 84.83519 * 8 7 6 10 10 H 1.08995 * 109.87687 * 306.58532 * 9 8 7 11 11 C 1.54322 * 109.88293 * 67.61178 * 9 8 7 12 12 C 1.55397 * 102.82995 * 141.51755 * 11 9 8 13 13 C 1.54904 * 101.66779 * 324.65872 * 12 11 9 14 14 N 1.47027 * 109.88260 * 185.57543 * 9 8 7 15 15 C 1.34775 * 125.64726 * 61.67769 * 14 9 8 16 16 O 1.21687 * 120.00432 * 5.05681 * 15 14 9 17 17 C 1.46383 * 119.99891 * 185.05653 * 15 14 9 18 18 H 1.07997 * 119.99657 * 359.97438 * 17 15 14 19 19 C 1.40045 * 119.99938 * 180.02562 * 17 15 14 20 20 N 1.30680 * 120.00003 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99930 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47013 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46911 * 120.00133 * 21 19 17 24 24 H 1.48501 * 109.46807 * 239.99704 * 21 19 17 25 25 C 1.38159 * 120.05506 * 359.67990 * 7 6 5 26 26 H 1.09008 * 109.46358 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47475 * 60.00468 * 1 2 3 28 28 H 1.08995 * 109.47356 * 299.99373 * 1 2 3 29 29 H 1.07998 * 120.02172 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.96864 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.94447 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47002 * 204.83948 * 8 7 6 33 33 H 1.09008 * 109.46950 * 324.83681 * 8 7 6 34 34 H 1.09007 * 110.71516 * 259.97019 * 11 9 8 35 35 H 1.08991 * 110.72271 * 23.23968 * 11 9 8 36 36 H 1.09004 * 111.03885 * 206.52279 * 12 11 9 37 37 H 1.09003 * 110.89589 * 82.73469 * 12 11 9 38 38 H 1.09002 * 110.37036 * 278.08942 * 13 12 11 39 39 H 1.08997 * 110.36875 * 155.76713 * 13 12 11 40 40 H 0.96999 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.03061 * 180.30213 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3754 0.0005 5 6 1.9206 3.6049 0.0000 6 6 3.3016 3.6760 -0.0005 7 6 4.0558 2.5173 -0.0015 8 6 5.5606 2.5985 -0.0026 9 6 6.0640 2.7553 1.4336 10 1 5.5657 3.5990 1.9109 11 6 5.7877 1.4630 2.2305 12 6 7.0589 1.3235 3.1134 13 6 8.1594 1.8611 2.1650 14 7 7.5187 2.9689 1.4331 15 6 8.1600 4.0060 0.8592 16 8 7.5228 4.9141 0.3590 17 6 9.6233 4.0402 0.8374 18 1 10.1888 3.2345 1.2817 19 6 10.2898 5.1182 0.2415 20 7 9.6054 6.0933 -0.2955 21 14 12.1570 5.1614 0.2132 22 1 12.6904 3.9476 0.8818 23 1 12.6299 5.2004 -1.1940 24 1 12.6350 6.3711 0.9296 25 6 3.4311 1.2851 0.0048 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 0.5137 0.8900 29 1 0.2127 2.3203 0.0005 30 1 1.3336 4.5115 0.0000 31 1 3.7918 4.6383 -0.0005 32 1 5.9733 1.6870 -0.4349 33 1 5.8777 3.4573 -0.5945 34 1 4.8965 1.5741 2.8484 35 1 5.6891 0.6097 1.5596 36 1 7.2423 0.2809 3.3734 37 1 6.9797 1.9397 4.0091 38 1 8.4769 1.0820 1.4720 39 1 9.0096 2.2280 2.7400 40 1 10.0670 6.8397 -0.7086 41 1 4.0207 0.3802 0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547473374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:46 Heat of formation + Delta-G solvation = -76.067826 kcal Electronic energy + Delta-G solvation = -22864.110727 eV Core-core repulsion = 19514.967697 eV Total energy + Delta-G solvation = -3349.143031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22969 -40.31968 -38.55314 -37.51717 -34.65001 -34.00087 -31.96219 -31.52957 -30.08650 -28.27017 -28.01889 -26.51563 -23.86546 -23.51864 -22.24166 -21.81087 -20.40844 -18.65256 -18.46315 -17.69952 -17.16629 -16.92446 -16.84009 -16.59892 -16.05048 -15.40614 -15.23190 -14.83748 -14.51423 -14.36504 -14.22265 -14.03323 -13.67030 -13.44457 -13.25428 -13.02615 -12.92432 -12.75035 -12.62212 -12.44010 -12.33794 -12.03239 -11.95720 -11.86438 -11.75283 -11.54089 -11.50233 -10.94667 -9.82339 -9.79980 -9.17904 -9.01248 -8.29157 -6.84283 0.34171 0.47189 1.38364 1.38583 1.56505 2.22742 2.36995 2.45944 2.74358 2.91505 3.58739 3.75383 3.83041 3.87263 3.91595 4.11154 4.16203 4.28699 4.37003 4.39097 4.44236 4.46091 4.54299 4.57154 4.70263 4.77387 4.86418 4.90703 4.99518 5.02712 5.11381 5.19760 5.25601 5.31263 5.33976 5.41583 5.47633 5.68316 5.75846 5.78755 6.07566 6.46100 6.48201 6.87078 7.52170 8.48290 8.68047 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.003755 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.485604 B = 7454.581739 C = 8128.388467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.123 3.877 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.174 4.174 7 C -0.035 4.035 8 C -0.080 4.080 9 C 0.150 3.850 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.120 4.120 13 C 0.108 3.892 14 N -0.650 5.650 15 C 0.554 3.446 16 O -0.625 6.625 17 C -0.565 4.565 18 H 0.085 0.915 19 C 0.027 3.973 20 N -0.821 5.821 21 Si 0.997 3.003 22 H -0.247 1.247 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.154 4.154 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.273 0.727 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.654 -13.519 3.867 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.078 3.922 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.192 4.192 7 C -0.036 4.036 8 C -0.118 4.118 9 C 0.046 3.954 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.158 4.158 13 C -0.015 4.015 14 N -0.387 5.387 15 C 0.361 3.639 16 O -0.512 6.512 17 C -0.602 4.602 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.816 3.184 22 H -0.169 1.169 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.173 4.173 26 H 0.138 0.862 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.174 0.826 30 H 0.164 0.836 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.891 -13.004 3.484 20.074 hybrid contribution 0.714 0.952 -0.368 1.246 sum -14.177 -12.052 3.116 18.866 Atomic orbital electron populations 1.23360 0.76399 1.05609 1.02310 1.86049 1.23512 1.26403 1.88665 1.19042 0.92008 0.84946 0.96203 1.21463 1.01210 0.91442 1.08752 1.21141 0.93349 0.98507 0.96377 1.21083 0.95074 0.97747 1.05320 1.19531 0.94404 0.92984 0.96701 1.20813 0.91379 1.01512 0.98139 1.21238 0.82611 0.97541 0.94047 0.95325 1.22678 0.98755 0.95291 0.98159 1.22825 0.93186 1.02820 0.96982 1.22170 0.96622 0.88736 0.94000 1.48653 1.05651 1.25412 1.58976 1.18356 0.89045 0.79354 0.77181 1.90542 1.69440 1.39048 1.52206 1.21438 0.90008 1.08375 1.40373 0.89680 1.26990 1.06191 0.93544 0.92002 1.70207 1.39282 1.07780 1.27851 0.84987 0.74930 0.79616 0.78871 1.16949 1.19336 1.19295 1.20309 0.92019 0.97493 1.07437 0.86226 0.91780 0.91568 0.82570 0.83579 0.88136 0.90917 0.94124 0.89562 0.89408 0.86950 0.91194 0.92420 0.92065 0.91666 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.25 10.50 -92.47 -0.97 -8.22 16 3 C 0.12 3.11 6.69 22.51 0.15 3.26 16 4 C -0.21 -4.71 9.04 22.37 0.20 -4.51 16 5 C -0.08 -1.96 10.04 22.25 0.22 -1.74 16 6 C -0.17 -5.85 9.72 22.28 0.22 -5.63 16 7 C -0.04 -1.21 4.81 -19.88 -0.10 -1.30 16 8 C -0.08 -3.24 4.83 29.85 0.14 -3.10 16 9 C 0.15 6.12 2.85 45.34 0.13 6.25 16 10 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 11 C -0.11 -3.20 5.71 31.87 0.18 -3.01 16 12 C -0.12 -3.23 7.09 32.07 0.23 -3.00 16 13 C 0.11 3.95 6.42 86.85 0.56 4.50 16 14 N -0.65 -31.08 3.06 -793.10 -2.43 -33.51 16 15 C 0.55 33.45 7.50 86.36 0.65 34.10 16 16 O -0.63 -43.13 14.19 -4.31 -0.06 -43.19 16 17 C -0.57 -33.02 8.97 24.83 0.22 -32.80 16 18 H 0.09 4.51 6.78 -2.91 -0.02 4.49 16 19 C 0.03 1.57 5.50 85.30 0.47 2.04 16 20 N -0.82 -51.43 11.83 21.84 0.26 -51.17 16 21 Si 1.00 41.93 29.56 68.60 2.03 43.96 16 22 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 C -0.15 -4.43 8.98 22.37 0.20 -4.23 16 26 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 28 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16 30 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.10 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.07 2.76 7.92 -2.39 -0.02 2.74 16 33 H 0.04 2.06 6.85 -2.38 -0.02 2.04 16 34 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.09 2.24 7.17 -2.39 -0.02 2.23 16 36 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.30 7.36 -2.39 -0.02 2.29 16 40 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 41 H 0.14 3.57 7.68 -2.91 -0.02 3.55 16 Total: -1.00 -80.78 337.07 4.44 -76.34 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 1.02 Total: 23.64 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.59 Total: -7.84 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.17 Total: -84.68 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.03 Total: -51.41 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -80.78 4.44 -76.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547473374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.272 kcal (2) G-P(sol) polarization free energy of solvation -80.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds