Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35901 * 116.99686 * 2 1 4 4 C 1.38754 * 120.05358 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38297 * 120.05365 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.11261 * 0.04664 * 6 5 4 8 8 C 1.50695 * 119.97268 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.47290 * 95.61077 * 8 7 6 10 10 H 1.09000 * 109.99317 * 53.80860 * 9 8 7 11 11 C 1.54332 * 109.99312 * 292.76974 * 9 8 7 12 12 C 1.55153 * 103.02040 * 218.66161 * 11 9 8 13 13 C 1.54909 * 101.58172 * 35.30714 * 12 11 9 14 14 N 1.47017 * 109.88333 * 174.89733 * 9 8 7 15 15 C 1.34777 * 125.65109 * 298.40016 * 14 9 8 16 16 O 1.21681 * 119.99957 * 355.14568 * 15 14 9 17 17 C 1.46377 * 119.99812 * 175.14166 * 15 14 9 18 18 H 1.07998 * 120.00395 * 2.66417 * 17 15 14 19 19 C 1.40051 * 119.99586 * 182.66362 * 17 15 14 20 20 N 1.30669 * 120.00223 * 333.34219 * 19 17 15 21 21 Si 1.86801 * 119.99757 * 153.35177 * 19 17 15 22 22 H 1.48502 * 109.46761 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47003 * 299.99316 * 21 19 17 24 24 H 1.48501 * 109.47292 * 59.99810 * 21 19 17 25 25 C 1.38165 * 120.05639 * 0.22921 * 7 6 5 26 26 H 1.09003 * 109.47022 * 60.00704 * 1 2 3 27 27 H 1.09002 * 109.46815 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47313 * 300.00297 * 1 2 3 29 29 H 1.07999 * 120.03234 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.97631 * 180.02562 * 5 4 3 31 31 H 1.07994 * 119.93971 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47168 * 335.61617 * 8 7 6 33 33 H 1.09000 * 109.47120 * 215.61542 * 8 7 6 34 34 H 1.09006 * 110.84796 * 100.19556 * 11 9 8 35 35 H 1.09002 * 110.51277 * 336.97797 * 11 9 8 36 36 H 1.09003 * 111.00710 * 277.23307 * 12 11 9 37 37 H 1.09002 * 111.00672 * 153.38208 * 12 11 9 38 38 H 1.09005 * 110.37206 * 204.15306 * 13 12 11 39 39 H 1.08997 * 110.46207 * 81.87489 * 13 12 11 40 40 H 0.97001 * 120.00363 * 353.66228 * 20 19 17 41 41 H 1.07998 * 120.02782 * 179.74855 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 4.0559 2.5173 -0.0004 8 6 5.5607 2.5984 -0.0004 9 6 6.0776 2.4851 1.4352 10 1 5.6794 1.5856 1.9048 11 6 5.6568 3.7283 2.2472 12 6 6.9015 4.0067 3.1305 13 6 8.0553 3.6097 2.1760 14 7 7.5471 2.4406 1.4355 15 6 8.3043 1.4914 0.8506 16 8 7.7762 0.5240 0.3349 17 6 9.7620 1.6242 0.8358 18 1 10.2331 2.4606 1.3307 19 6 10.5457 0.6667 0.1797 20 7 10.1042 -0.5552 0.0409 21 14 12.2224 1.1365 -0.4967 22 1 12.8460 -0.0477 -1.1401 23 1 12.0655 2.2201 -1.4999 24 1 13.0886 1.6103 0.6125 25 6 3.4311 1.2850 -0.0057 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2127 2.3203 -0.0005 30 1 1.3338 4.5114 -0.0011 31 1 3.7920 4.6382 -0.0005 32 1 5.8731 3.5526 -0.4248 33 1 5.9684 1.7837 -0.5988 34 1 4.7858 3.5111 2.8656 35 1 5.4593 4.5695 1.5828 36 1 6.8973 3.3780 4.0209 37 1 6.9621 5.0613 3.3992 38 1 8.9441 3.3402 2.7466 39 1 8.2794 4.4257 1.4891 40 1 9.2770 -0.8239 0.4706 41 1 4.0207 0.3801 -0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547473375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -65.178326 kcal Electronic energy + Delta-G solvation = -22929.314787 eV Core-core repulsion = 19580.643961 eV Total energy + Delta-G solvation = -3348.670826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15005 -38.89788 -37.41708 -35.92968 -32.79070 -32.38049 -30.60464 -30.34365 -28.82081 -27.34340 -25.67894 -25.19049 -22.56611 -22.10199 -21.02612 -20.46823 -18.89997 -17.70983 -17.18258 -16.19899 -15.91887 -15.76670 -15.61801 -15.07238 -14.16467 -13.82092 -13.79065 -13.73130 -13.19398 -13.06425 -12.91522 -12.58085 -12.47096 -12.18875 -11.97291 -11.72445 -11.47159 -11.33143 -11.14239 -10.95902 -10.81086 -10.68799 -10.55710 -10.36954 -10.23464 -10.20517 -10.00522 -8.70607 -8.65958 -8.13186 -7.73270 -7.35547 -6.66591 -4.66896 1.42707 1.54422 3.26028 3.28947 3.33741 3.53090 3.84880 4.18889 4.46087 4.55674 4.78300 4.94088 4.99884 5.00199 5.06060 5.11901 5.21933 5.28784 5.32270 5.44502 5.57535 5.62168 5.66589 5.75130 5.85253 5.89716 6.06966 6.10425 6.22110 6.24100 6.37848 6.43980 6.49239 6.52795 6.59914 6.74778 6.84239 6.97746 7.32958 7.44951 7.93809 8.13815 8.43497 8.93255 9.50575 10.41853 10.59662 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.004110 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.476280 B = 6811.707707 C = 7699.484739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.220 4.220 5 C -0.083 4.083 6 C -0.155 4.155 7 C -0.023 4.023 8 C -0.093 4.093 9 C 0.155 3.845 10 H 0.059 0.941 11 C -0.125 4.125 12 C -0.136 4.136 13 C 0.119 3.881 14 N -0.638 5.638 15 C 0.566 3.434 16 O -0.623 6.623 17 C -0.615 4.615 18 H 0.065 0.935 19 C 0.054 3.946 20 N -0.794 5.794 21 Si 1.067 2.933 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.281 1.281 25 C -0.144 4.144 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.311 0.689 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.265 9.160 2.507 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.239 4.239 5 C -0.101 4.101 6 C -0.173 4.173 7 C -0.024 4.024 8 C -0.131 4.131 9 C 0.050 3.950 10 H 0.077 0.923 11 C -0.163 4.163 12 C -0.174 4.174 13 C -0.005 4.005 14 N -0.375 5.375 15 C 0.377 3.623 16 O -0.512 6.512 17 C -0.651 4.651 18 H 0.084 0.916 19 C -0.171 4.171 20 N -0.422 5.422 21 Si 0.892 3.108 22 H -0.202 1.202 23 H -0.205 1.205 24 H -0.207 1.207 25 C -0.163 4.163 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.127 0.873 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.166 7.782 1.360 16.220 hybrid contribution -1.691 0.899 0.949 2.137 sum -15.857 8.681 2.309 18.225 Atomic orbital electron populations 1.23008 0.78855 1.03671 1.01076 1.86105 1.20993 1.27184 1.88838 1.19024 0.92271 0.83979 0.96657 1.21115 0.99539 0.92501 1.10761 1.20847 0.94543 0.96677 0.98058 1.20983 0.93512 0.98015 1.04813 1.19789 0.96083 0.91885 0.94660 1.21079 0.89192 1.03733 0.99142 1.21088 0.83778 0.96993 0.93153 0.92331 1.22688 0.97655 0.97788 0.98188 1.22802 0.95506 1.00845 0.98243 1.21878 0.96345 0.89054 0.93229 1.48534 1.03452 1.26589 1.58895 1.18042 0.87266 0.79697 0.77249 1.90478 1.75123 1.32622 1.53023 1.21733 0.89695 1.13305 1.40319 0.91628 1.26583 1.04613 0.92246 0.93639 1.70105 1.23142 1.17154 1.31836 0.83659 0.73785 0.76393 0.76958 1.20227 1.20499 1.20663 1.20462 0.91115 0.98959 1.05762 0.92866 0.88455 0.92862 0.85982 0.86156 0.86079 0.91280 0.88967 0.91272 0.91167 0.91319 0.90996 0.91307 0.93434 0.87349 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.51 10.50 -19.43 -0.20 -4.71 16 3 C 0.13 1.87 6.69 -39.21 -0.26 1.61 16 4 C -0.22 -2.74 9.04 -39.43 -0.36 -3.09 16 5 C -0.08 -0.99 10.04 -39.60 -0.40 -1.39 16 6 C -0.15 -2.09 9.05 -39.56 -0.36 -2.45 16 7 C -0.02 -0.38 4.80 -104.65 -0.50 -0.88 16 8 C -0.09 -1.75 4.83 -27.88 -0.13 -1.88 16 9 C 0.15 3.01 2.86 -66.95 -0.19 2.82 16 10 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 11 C -0.13 -1.86 5.72 -24.89 -0.14 -2.00 16 12 C -0.14 -1.97 7.09 -24.58 -0.17 -2.15 16 13 C 0.12 2.22 6.45 -2.53 -0.02 2.20 16 14 N -0.64 -14.65 3.06 -164.65 -0.50 -15.16 16 15 C 0.57 16.09 7.41 -12.99 -0.10 16.00 16 16 O -0.62 -19.56 13.46 5.21 0.07 -19.49 16 17 C -0.62 -17.52 8.86 -35.63 -0.32 -17.83 16 18 H 0.07 1.75 6.86 -52.49 -0.36 1.39 16 19 C 0.05 1.53 5.36 -17.37 -0.09 1.44 16 20 N -0.79 -24.22 13.19 55.55 0.73 -23.49 16 21 Si 1.07 23.62 30.01 -169.99 -5.10 18.52 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 25 C -0.14 -2.45 9.66 -39.43 -0.38 -2.83 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.12 1.19 6.30 -52.49 -0.33 0.85 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.42 7.72 -52.49 -0.41 1.02 16 32 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.09 2.11 6.85 -51.93 -0.36 1.75 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.94 7.19 -51.93 -0.37 0.57 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.32 7.30 -51.93 -0.38 0.95 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.31 10.02 6.44 -40.82 -0.26 9.76 16 41 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -33.94 336.06 -8.22 -42.17 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.85 Total: 6.27 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.43 Total: -9.18 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.23 Total: -38.64 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.13 Total: -24.20 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.10 Total: 18.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.94 -8.22 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547473375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.011 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds