Wall clock time and date at job start Tue Mar 31 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35901 * 116.99686 * 2 1 4 4 C 1.38754 * 120.05358 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38297 * 120.05365 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.11261 * 0.04664 * 6 5 4 8 8 C 1.50695 * 119.97268 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.47290 * 95.61077 * 8 7 6 10 10 H 1.09000 * 109.99317 * 53.80860 * 9 8 7 11 11 C 1.54332 * 109.99312 * 292.76974 * 9 8 7 12 12 C 1.55153 * 103.02040 * 218.66161 * 11 9 8 13 13 C 1.54909 * 101.58172 * 35.30714 * 12 11 9 14 14 N 1.47017 * 109.88333 * 174.89733 * 9 8 7 15 15 C 1.34777 * 125.65109 * 298.40016 * 14 9 8 16 16 O 1.21681 * 119.99957 * 355.14568 * 15 14 9 17 17 C 1.46377 * 119.99812 * 175.14166 * 15 14 9 18 18 H 1.07998 * 120.00395 * 2.66417 * 17 15 14 19 19 C 1.40051 * 119.99586 * 182.66362 * 17 15 14 20 20 N 1.30669 * 120.00223 * 333.34219 * 19 17 15 21 21 Si 1.86801 * 119.99757 * 153.35177 * 19 17 15 22 22 H 1.48502 * 109.46761 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47003 * 299.99316 * 21 19 17 24 24 H 1.48501 * 109.47292 * 59.99810 * 21 19 17 25 25 C 1.38165 * 120.05639 * 0.22921 * 7 6 5 26 26 H 1.09003 * 109.47022 * 60.00704 * 1 2 3 27 27 H 1.09002 * 109.46815 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47313 * 300.00297 * 1 2 3 29 29 H 1.07999 * 120.03234 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.97631 * 180.02562 * 5 4 3 31 31 H 1.07994 * 119.93971 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47168 * 335.61617 * 8 7 6 33 33 H 1.09000 * 109.47120 * 215.61542 * 8 7 6 34 34 H 1.09006 * 110.84796 * 100.19556 * 11 9 8 35 35 H 1.09002 * 110.51277 * 336.97797 * 11 9 8 36 36 H 1.09003 * 111.00710 * 277.23307 * 12 11 9 37 37 H 1.09002 * 111.00672 * 153.38208 * 12 11 9 38 38 H 1.09005 * 110.37206 * 204.15306 * 13 12 11 39 39 H 1.08997 * 110.46207 * 81.87489 * 13 12 11 40 40 H 0.97001 * 120.00363 * 353.66228 * 20 19 17 41 41 H 1.07998 * 120.02782 * 179.74855 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 4.0559 2.5173 -0.0004 8 6 5.5607 2.5984 -0.0004 9 6 6.0776 2.4851 1.4352 10 1 5.6794 1.5856 1.9048 11 6 5.6568 3.7283 2.2472 12 6 6.9015 4.0067 3.1305 13 6 8.0553 3.6097 2.1760 14 7 7.5471 2.4406 1.4355 15 6 8.3043 1.4914 0.8506 16 8 7.7762 0.5240 0.3349 17 6 9.7620 1.6242 0.8358 18 1 10.2331 2.4606 1.3307 19 6 10.5457 0.6667 0.1797 20 7 10.1042 -0.5552 0.0409 21 14 12.2224 1.1365 -0.4967 22 1 12.8460 -0.0477 -1.1401 23 1 12.0655 2.2201 -1.4999 24 1 13.0886 1.6103 0.6125 25 6 3.4311 1.2850 -0.0057 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2127 2.3203 -0.0005 30 1 1.3338 4.5114 -0.0011 31 1 3.7920 4.6382 -0.0005 32 1 5.8731 3.5526 -0.4248 33 1 5.9684 1.7837 -0.5988 34 1 4.7858 3.5111 2.8656 35 1 5.4593 4.5695 1.5828 36 1 6.8973 3.3780 4.0209 37 1 6.9621 5.0613 3.3992 38 1 8.9441 3.3402 2.7466 39 1 8.2794 4.4257 1.4891 40 1 9.2770 -0.8239 0.4706 41 1 4.0207 0.3801 -0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547473375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:49 Heat of formation + Delta-G solvation = -87.350161 kcal Electronic energy + Delta-G solvation = -22930.276230 eV Core-core repulsion = 19580.643961 eV Total energy + Delta-G solvation = -3349.632269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29148 -40.48761 -38.70138 -37.80606 -34.64917 -34.03487 -32.17556 -31.54301 -30.11972 -28.18540 -27.79321 -26.56239 -23.96577 -23.51651 -22.23867 -21.94274 -20.71178 -19.11355 -18.79641 -17.54222 -17.19539 -16.93189 -16.74211 -16.67439 -15.71921 -15.55919 -15.28999 -14.86049 -14.66943 -14.57789 -14.34474 -14.20095 -13.74492 -13.60766 -13.45181 -13.20899 -12.79992 -12.74639 -12.55652 -12.43404 -12.13607 -12.05250 -11.96611 -11.88205 -11.75414 -11.66648 -11.57360 -10.84589 -9.98102 -9.86523 -9.32155 -9.13731 -8.91764 -6.94750 0.30740 0.45776 1.50160 1.54500 1.82144 2.32180 2.34731 2.39857 2.69351 2.83884 3.35488 3.68820 3.75745 3.83486 3.86012 4.01522 4.17162 4.23253 4.28801 4.32425 4.36625 4.39846 4.46415 4.52726 4.66669 4.68078 4.81013 4.87947 4.94112 4.96136 5.05985 5.10936 5.19276 5.30551 5.35434 5.45534 5.50545 5.67364 5.71110 5.84532 6.01778 6.22030 6.44927 6.80265 7.42683 8.19376 8.29846 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.004110 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.476280 B = 6811.707707 C = 7699.484739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.348 6.348 3 C 0.117 3.883 4 C -0.210 4.210 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.037 4.037 8 C -0.080 4.080 9 C 0.148 3.852 10 H 0.021 0.979 11 C -0.109 4.109 12 C -0.120 4.120 13 C 0.108 3.892 14 N -0.646 5.646 15 C 0.547 3.453 16 O -0.669 6.669 17 C -0.638 4.638 18 H 0.082 0.918 19 C 0.004 3.996 20 N -0.826 5.826 21 Si 1.128 2.872 22 H -0.277 1.277 23 H -0.263 1.263 24 H -0.248 1.248 25 C -0.182 4.182 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.158 0.842 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.285 0.715 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 13.597 3.237 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.263 6.263 3 C 0.072 3.928 4 C -0.228 4.228 5 C -0.086 4.086 6 C -0.168 4.168 7 C -0.038 4.038 8 C -0.118 4.118 9 C 0.043 3.957 10 H 0.039 0.961 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.015 4.015 14 N -0.381 5.381 15 C 0.358 3.642 16 O -0.562 6.562 17 C -0.673 4.673 18 H 0.100 0.900 19 C -0.213 4.213 20 N -0.454 5.454 21 Si 0.944 3.056 22 H -0.202 1.202 23 H -0.188 1.188 24 H -0.172 1.172 25 C -0.201 4.201 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.176 0.824 30 H 0.184 0.816 31 H 0.166 0.834 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.973 12.268 2.139 20.254 hybrid contribution -1.316 -0.506 0.754 1.599 sum -17.289 11.762 2.892 21.110 Atomic orbital electron populations 1.23367 0.76071 1.05479 1.02624 1.86071 1.23963 1.27437 1.88817 1.19093 0.91494 0.85445 0.96775 1.21528 1.01161 0.91481 1.08643 1.21354 0.93967 0.98036 0.95239 1.21214 0.94373 0.97452 1.03777 1.19551 0.94344 0.92943 0.96946 1.20818 0.91525 1.01722 0.97760 1.21307 0.81644 0.98317 0.94410 0.96105 1.22656 0.98374 0.95607 0.98005 1.22789 0.92766 1.03466 0.96751 1.22205 0.97775 0.87572 0.93956 1.48434 1.05148 1.26673 1.57798 1.18373 0.88250 0.80213 0.77398 1.90442 1.76114 1.34819 1.54854 1.22138 0.90198 1.13902 1.41033 0.90003 1.28594 1.08606 0.91304 0.92799 1.70254 1.22485 1.18831 1.33817 0.82947 0.68659 0.76482 0.77537 1.20235 1.18768 1.17228 1.20311 0.92603 0.97966 1.09211 0.91223 0.86824 0.91140 0.82441 0.81617 0.83437 0.89971 0.95004 0.89331 0.88433 0.91558 0.86379 0.92495 0.91886 0.90203 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.35 -10.12 10.50 -92.44 -0.97 -11.09 16 3 C 0.12 3.52 6.69 22.51 0.15 3.67 16 4 C -0.21 -4.52 9.04 22.37 0.20 -4.31 16 5 C -0.07 -1.31 10.04 22.26 0.22 -1.08 16 6 C -0.15 -3.60 9.05 22.28 0.20 -3.40 16 7 C -0.04 -1.24 4.80 -19.88 -0.10 -1.34 16 8 C -0.08 -3.20 4.83 29.85 0.14 -3.05 16 9 C 0.15 6.01 2.86 45.35 0.13 6.14 16 10 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 11 C -0.11 -2.95 5.72 31.78 0.18 -2.77 16 12 C -0.12 -3.11 7.09 31.98 0.23 -2.88 16 13 C 0.11 3.91 6.45 86.85 0.56 4.47 16 14 N -0.65 -31.00 3.06 -793.06 -2.43 -33.43 16 15 C 0.55 33.27 7.41 86.36 0.64 33.91 16 16 O -0.67 -46.16 13.46 -4.29 -0.06 -46.22 16 17 C -0.64 -37.71 8.86 24.83 0.22 -37.49 16 18 H 0.08 4.42 6.86 -2.91 -0.02 4.40 16 19 C 0.00 0.22 5.36 85.31 0.46 0.68 16 20 N -0.83 -53.47 13.19 21.84 0.29 -53.18 16 21 Si 1.13 47.84 30.01 68.60 2.06 49.89 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 24 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 25 C -0.18 -6.74 9.66 22.37 0.22 -6.53 16 26 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 29 H 0.16 2.25 6.30 -2.91 -0.02 2.23 16 30 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.15 2.74 7.72 -2.91 -0.02 2.72 16 32 H 0.08 2.96 7.93 -2.39 -0.02 2.94 16 33 H 0.03 1.63 6.85 -2.39 -0.02 1.61 16 34 H 0.09 2.12 8.14 -2.38 -0.02 2.11 16 35 H 0.10 2.16 7.19 -2.39 -0.02 2.15 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.18 7.30 -2.38 -0.02 2.16 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.28 19.95 6.44 -92.71 -0.60 19.36 16 41 H 0.09 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -85.08 336.06 4.65 -80.43 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 1.19 Total: 26.15 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.57 Total: -12.56 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.14 Total: -86.61 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -1.03 Total: -57.31 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.06 Total: 49.89 kcal Total: -85.08 4.65 -80.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547473375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.916 kcal (2) G-P(sol) polarization free energy of solvation -85.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds