Wall clock time and date at job start Tue Mar 31 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81393 * 109.47469 * 2 1 4 4 O 1.42106 * 108.57835 * 65.51558 * 3 2 1 5 5 O 1.42098 * 108.58146 * 294.48790 * 3 2 1 6 6 C 1.81405 * 101.92253 * 179.97438 * 3 2 1 7 7 C 1.53114 * 109.52225 * 185.00393 * 6 3 2 8 8 C 1.53033 * 109.27866 * 177.56161 * 7 6 3 9 9 N 1.46853 * 109.52305 * 300.81725 * 8 7 6 10 10 C 1.46900 * 111.00293 * 185.83831 * 9 8 7 11 11 H 1.08991 * 109.47516 * 188.74592 * 10 9 8 12 12 C 1.53002 * 109.46957 * 308.74636 * 10 9 8 13 13 C 1.53003 * 109.46787 * 68.74436 * 10 9 8 14 14 C 1.50698 * 109.47323 * 63.57749 * 13 10 9 15 15 H 1.08003 * 119.99770 * 5.07925 * 14 13 10 16 16 C 1.37871 * 120.00232 * 185.08145 * 14 13 10 17 17 N 1.31519 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46928 * 90.00281 * 18 16 14 20 20 H 1.48501 * 109.47141 * 210.00293 * 18 16 14 21 21 H 1.48495 * 109.47489 * 330.00242 * 18 16 14 22 22 C 1.46845 * 111.19674 * 61.74112 * 9 8 7 23 23 C 1.53038 * 109.52395 * 298.26014 * 22 9 8 24 24 H 1.09001 * 109.47189 * 59.99425 * 1 2 3 25 25 H 1.08994 * 109.47917 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47052 * 300.00116 * 1 2 3 27 27 H 1.09008 * 109.46817 * 239.99763 * 2 1 3 28 28 H 1.08996 * 109.46737 * 120.00542 * 2 1 3 29 29 H 1.08997 * 109.56920 * 64.84467 * 6 3 2 30 30 H 1.08998 * 109.50716 * 57.61983 * 7 6 3 31 31 H 1.09009 * 109.50348 * 297.49650 * 7 6 3 32 32 H 1.08998 * 109.46866 * 60.83251 * 8 7 6 33 33 H 1.09005 * 109.46646 * 180.80021 * 8 7 6 34 34 H 1.08997 * 109.47143 * 179.97438 * 12 10 9 35 35 H 1.08998 * 109.47132 * 300.00087 * 12 10 9 36 36 H 1.09004 * 109.47126 * 59.99975 * 12 10 9 37 37 H 1.09000 * 109.46560 * 183.57500 * 13 10 9 38 38 H 1.08996 * 109.47229 * 303.56902 * 13 10 9 39 39 H 0.96998 * 119.99950 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.46235 * 58.27617 * 22 9 8 41 41 H 1.08994 * 109.46274 * 178.24303 * 22 9 8 42 42 H 1.08997 * 109.50575 * 179.11916 * 23 22 9 43 43 H 1.08997 * 109.50303 * 299.24189 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7101 0.0000 4 8 1.7594 2.3231 1.2259 5 8 1.7593 2.3232 -1.2258 6 6 3.9331 1.4717 0.0008 7 6 4.6292 2.8296 0.1268 8 6 6.1435 2.6174 0.1881 9 7 6.4738 1.7691 1.3405 10 6 7.9285 1.6572 1.5121 11 1 8.1482 0.9052 2.2698 12 6 8.5684 1.2458 0.1846 13 6 8.4951 3.0078 1.9545 14 6 7.9311 3.3716 3.3038 15 1 7.3029 2.6705 3.8333 16 6 8.2168 4.5993 3.8622 17 7 8.9812 5.4533 3.2171 18 14 7.5170 5.0505 5.5344 19 1 8.4622 4.6248 6.5977 20 1 7.3186 6.5203 5.6078 21 1 6.2139 4.3649 5.7271 22 6 5.8548 0.4431 1.2185 23 6 4.3318 0.5905 1.1878 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 4.2380 0.9908 -0.9286 30 1 4.2943 3.3273 1.0369 31 1 4.3830 3.4464 -0.7377 32 1 6.4797 2.1322 -0.7282 33 1 6.6415 3.5814 0.2921 34 1 9.6478 1.1633 0.3118 35 1 8.1646 0.2837 -0.1307 36 1 8.3487 1.9980 -0.5732 37 1 9.5811 2.9421 2.0205 38 1 8.2209 3.7726 1.2278 39 1 9.1819 6.3172 3.6099 40 1 6.1923 -0.0319 0.2973 41 1 6.1430 -0.1720 2.0709 42 1 3.8731 -0.3925 1.0816 43 1 3.9923 1.0530 2.1146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565044199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:46 Heat of formation + Delta-G solvation = -79.361043 kcal Electronic energy + Delta-G solvation = -22422.465504 eV Core-core repulsion = 19208.623620 eV Total energy + Delta-G solvation = -3213.841884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.08826 -37.01988 -36.06752 -35.09754 -33.47143 -32.49577 -30.77226 -29.86449 -27.31857 -24.92938 -24.20157 -23.13794 -22.61000 -20.32465 -18.86388 -18.78270 -17.20829 -16.23990 -16.14823 -16.07622 -15.45111 -14.72410 -14.59993 -14.32298 -14.11166 -13.86860 -13.58185 -13.37351 -12.79778 -12.76940 -12.45737 -12.20994 -12.07735 -12.01087 -11.88999 -11.79525 -11.74772 -11.55326 -11.21378 -10.97397 -10.85749 -10.66357 -10.55481 -10.52992 -10.39413 -9.98165 -9.82520 -9.18154 -8.96448 -8.24569 -7.52564 -5.87543 -3.85259 -0.10919 2.65415 3.41314 3.48078 3.51175 3.53805 3.86987 4.31042 4.36419 4.41258 4.49448 4.59049 4.68925 4.89587 5.00941 5.27631 5.31475 5.35963 5.48789 5.50461 5.54500 5.60838 5.62749 5.69888 5.74161 5.78248 5.89943 5.95032 6.06691 6.10983 6.29677 6.42417 6.51374 6.65266 6.95142 7.49869 7.63905 7.87002 7.98849 8.12840 8.57853 9.19922 9.76682 11.24424 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.004701 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.169064 B = 5954.720938 C = 6664.544026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.619 4.619 3 S 2.411 3.589 4 O -0.931 6.931 5 O -0.944 6.944 6 C -0.561 4.561 7 C -0.103 4.103 8 C 0.066 3.934 9 N -0.509 5.509 10 C 0.087 3.913 11 H 0.070 0.930 12 C -0.184 4.184 13 C 0.030 3.970 14 C -0.489 4.489 15 H 0.059 0.941 16 C 0.052 3.948 17 N -0.904 5.904 18 Si 0.888 3.112 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.273 1.273 22 C 0.061 3.939 23 C -0.107 4.107 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.023 0.977 39 H 0.257 0.743 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.179 -13.580 -8.970 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.747 4.747 3 S 2.594 3.406 4 O -0.928 6.928 5 O -0.941 6.941 6 C -0.671 4.671 7 C -0.142 4.142 8 C -0.063 4.063 9 N -0.233 5.233 10 C -0.021 4.021 11 H 0.088 0.912 12 C -0.243 4.243 13 C -0.007 4.007 14 C -0.528 4.528 15 H 0.078 0.922 16 C -0.148 4.148 17 N -0.545 5.545 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.198 1.198 22 C -0.069 4.069 23 C -0.145 4.145 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.836 -12.398 -8.538 19.783 hybrid contribution 0.524 -0.894 0.067 1.038 sum -12.312 -13.292 -8.472 20.001 Atomic orbital electron populations 1.21501 0.90589 1.04639 1.03669 1.30270 1.07280 1.25715 1.11484 1.08457 0.78560 0.78119 0.75424 1.93595 1.81154 1.72829 1.45198 1.93562 1.81489 1.73263 1.45835 1.30179 1.22723 1.06764 1.07427 1.21476 0.97307 0.91596 1.03814 1.21982 0.93243 0.99638 0.91486 1.62006 1.11190 1.10349 1.39719 1.21928 0.84596 1.01553 0.93994 0.91221 1.22533 1.01503 0.99841 1.00422 1.19195 0.95111 0.89488 0.96924 1.21129 1.28902 1.00368 1.02384 0.92229 1.24982 0.95591 0.96704 0.97502 1.69958 1.38270 1.08031 1.38260 0.86653 0.79557 0.77408 0.84743 1.21070 1.21543 1.19775 1.21961 0.92514 0.92323 1.00079 1.21568 0.98807 0.97581 0.96555 0.91025 0.90256 0.90805 0.85224 0.84743 0.85212 0.88857 0.90528 0.95309 0.88651 0.92492 0.94289 0.92726 0.96689 0.95925 0.93324 0.95454 0.90507 0.90942 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.92 37.16 0.37 -0.72 16 2 C -0.62 -4.53 5.93 37.16 0.22 -4.31 16 3 S 2.41 27.84 4.26 -107.50 -0.46 27.38 16 4 O -0.93 -14.32 18.05 -57.83 -1.04 -15.36 16 5 O -0.94 -13.62 18.10 -57.83 -1.05 -14.67 16 6 C -0.56 -6.36 2.69 -26.61 -0.07 -6.43 16 7 C -0.10 -1.52 5.38 -26.66 -0.14 -1.66 16 8 C 0.07 1.09 4.47 -3.83 -0.02 1.08 16 9 N -0.51 -9.10 4.26 -226.69 -0.97 -10.06 16 10 C 0.09 1.68 2.26 -67.71 -0.15 1.53 16 11 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 12 C -0.18 -2.98 8.40 37.16 0.31 -2.67 16 13 C 0.03 0.74 4.40 -27.88 -0.12 0.61 16 14 C -0.49 -13.51 8.80 -34.44 -0.30 -13.81 16 15 H 0.06 1.64 7.75 -52.48 -0.41 1.23 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.06 0.84 5.18 -3.83 -0.02 0.82 16 23 C -0.11 -1.21 5.02 -26.65 -0.13 -1.34 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.13 0.75 6.84 -51.93 -0.36 0.40 16 29 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.03 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.10 1.85 6.28 -51.93 -0.33 1.52 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.55 6.93 -51.93 -0.36 0.19 16 36 H 0.05 0.88 6.44 -51.93 -0.33 0.55 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.59 6.39 -51.93 -0.33 0.26 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.03 0.34 6.98 -51.93 -0.36 -0.02 16 41 H 0.08 1.03 7.98 -51.93 -0.41 0.61 16 42 H 0.07 0.53 6.56 -51.93 -0.34 0.18 16 43 H 0.09 1.22 8.13 -51.93 -0.42 0.79 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -34.81 343.09 -10.14 -44.95 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.35 Total: -2.62 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -0.16 Total: -25.53 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.23 Total: -36.44 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -2.09 Total: -30.03 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 27.84 SS G_CDS: -0.46 Total: 27.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.81 -10.14 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565044199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.416 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds