Wall clock time and date at job start Tue Mar 31 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81393 * 109.47469 * 2 1 4 4 O 1.42106 * 108.57835 * 65.51558 * 3 2 1 5 5 O 1.42098 * 108.58146 * 294.48790 * 3 2 1 6 6 C 1.81405 * 101.92253 * 179.97438 * 3 2 1 7 7 C 1.53114 * 109.52225 * 185.00393 * 6 3 2 8 8 C 1.53033 * 109.27866 * 177.56161 * 7 6 3 9 9 N 1.46853 * 109.52305 * 300.81725 * 8 7 6 10 10 C 1.46900 * 111.00293 * 185.83831 * 9 8 7 11 11 H 1.08991 * 109.47516 * 188.74592 * 10 9 8 12 12 C 1.53002 * 109.46957 * 308.74636 * 10 9 8 13 13 C 1.53003 * 109.46787 * 68.74436 * 10 9 8 14 14 C 1.50698 * 109.47323 * 63.57749 * 13 10 9 15 15 H 1.08003 * 119.99770 * 5.07925 * 14 13 10 16 16 C 1.37871 * 120.00232 * 185.08145 * 14 13 10 17 17 N 1.31519 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46928 * 90.00281 * 18 16 14 20 20 H 1.48501 * 109.47141 * 210.00293 * 18 16 14 21 21 H 1.48495 * 109.47489 * 330.00242 * 18 16 14 22 22 C 1.46845 * 111.19674 * 61.74112 * 9 8 7 23 23 C 1.53038 * 109.52395 * 298.26014 * 22 9 8 24 24 H 1.09001 * 109.47189 * 59.99425 * 1 2 3 25 25 H 1.08994 * 109.47917 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47052 * 300.00116 * 1 2 3 27 27 H 1.09008 * 109.46817 * 239.99763 * 2 1 3 28 28 H 1.08996 * 109.46737 * 120.00542 * 2 1 3 29 29 H 1.08997 * 109.56920 * 64.84467 * 6 3 2 30 30 H 1.08998 * 109.50716 * 57.61983 * 7 6 3 31 31 H 1.09009 * 109.50348 * 297.49650 * 7 6 3 32 32 H 1.08998 * 109.46866 * 60.83251 * 8 7 6 33 33 H 1.09005 * 109.46646 * 180.80021 * 8 7 6 34 34 H 1.08997 * 109.47143 * 179.97438 * 12 10 9 35 35 H 1.08998 * 109.47132 * 300.00087 * 12 10 9 36 36 H 1.09004 * 109.47126 * 59.99975 * 12 10 9 37 37 H 1.09000 * 109.46560 * 183.57500 * 13 10 9 38 38 H 1.08996 * 109.47229 * 303.56902 * 13 10 9 39 39 H 0.96998 * 119.99950 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.46235 * 58.27617 * 22 9 8 41 41 H 1.08994 * 109.46274 * 178.24303 * 22 9 8 42 42 H 1.08997 * 109.50575 * 179.11916 * 23 22 9 43 43 H 1.08997 * 109.50303 * 299.24189 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7101 0.0000 4 8 1.7594 2.3231 1.2259 5 8 1.7593 2.3232 -1.2258 6 6 3.9331 1.4717 0.0008 7 6 4.6292 2.8296 0.1268 8 6 6.1435 2.6174 0.1881 9 7 6.4738 1.7691 1.3405 10 6 7.9285 1.6572 1.5121 11 1 8.1482 0.9052 2.2698 12 6 8.5684 1.2458 0.1846 13 6 8.4951 3.0078 1.9545 14 6 7.9311 3.3716 3.3038 15 1 7.3029 2.6705 3.8333 16 6 8.2168 4.5993 3.8622 17 7 8.9812 5.4533 3.2171 18 14 7.5170 5.0505 5.5344 19 1 8.4622 4.6248 6.5977 20 1 7.3186 6.5203 5.6078 21 1 6.2139 4.3649 5.7271 22 6 5.8548 0.4431 1.2185 23 6 4.3318 0.5905 1.1878 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 4.2380 0.9908 -0.9286 30 1 4.2943 3.3273 1.0369 31 1 4.3830 3.4464 -0.7377 32 1 6.4797 2.1322 -0.7282 33 1 6.6415 3.5814 0.2921 34 1 9.6478 1.1633 0.3118 35 1 8.1646 0.2837 -0.1307 36 1 8.3487 1.9980 -0.5732 37 1 9.5811 2.9421 2.0205 38 1 8.2209 3.7726 1.2278 39 1 9.1819 6.3172 3.6099 40 1 6.1923 -0.0319 0.2973 41 1 6.1430 -0.1720 2.0709 42 1 3.8731 -0.3925 1.0816 43 1 3.9923 1.0530 2.1146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565044199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:46 Heat of formation + Delta-G solvation = -105.479454 kcal Electronic energy + Delta-G solvation = -22423.598084 eV Core-core repulsion = 19208.623620 eV Total energy + Delta-G solvation = -3214.974463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33657 -38.01784 -37.05838 -36.47258 -34.52844 -34.05347 -31.91112 -31.30162 -29.12232 -26.03494 -25.13808 -24.88370 -23.72381 -21.58445 -20.18718 -19.72746 -18.34527 -18.13588 -17.10437 -17.02638 -16.68605 -16.48690 -15.76839 -15.40774 -15.15982 -15.02822 -14.79477 -14.37028 -14.02347 -13.82913 -13.68637 -13.50886 -13.32844 -13.14323 -13.06157 -13.01510 -12.95944 -12.80961 -12.55751 -12.39092 -12.34746 -12.11744 -11.84031 -11.79759 -11.71716 -11.41758 -11.07858 -11.06788 -10.69805 -10.46729 -8.83499 -8.09502 -6.13259 -0.95945 1.40085 1.42492 1.53169 1.84497 2.47491 2.67294 3.05349 3.12346 3.28509 3.48279 3.60256 3.79148 3.96555 4.04522 4.17914 4.29799 4.39644 4.42317 4.44199 4.52554 4.59463 4.65345 4.70933 4.73998 4.77991 4.88034 4.91704 4.98905 5.08084 5.13178 5.14423 5.21118 5.25854 5.37312 5.51402 5.72436 5.91022 6.34185 6.50004 6.59942 7.00880 7.52389 9.02522 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.004701 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.169064 B = 5954.720938 C = 6664.544026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.588 4.588 3 S 2.401 3.599 4 O -0.984 6.984 5 O -0.983 6.983 6 C -0.554 4.554 7 C -0.109 4.109 8 C 0.070 3.930 9 N -0.538 5.538 10 C 0.095 3.905 11 H 0.069 0.931 12 C -0.173 4.173 13 C 0.034 3.966 14 C -0.495 4.495 15 H 0.057 0.943 16 C -0.004 4.004 17 N -0.941 5.941 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.056 3.944 23 C -0.109 4.109 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.050 0.950 37 H -0.011 1.011 38 H -0.004 1.004 39 H 0.257 0.743 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 -17.344 -9.648 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.721 4.721 3 S 2.590 3.410 4 O -0.981 6.981 5 O -0.980 6.980 6 C -0.664 4.664 7 C -0.148 4.148 8 C -0.059 4.059 9 N -0.263 5.263 10 C -0.013 4.013 11 H 0.087 0.913 12 C -0.232 4.232 13 C -0.003 4.003 14 C -0.534 4.534 15 H 0.075 0.925 16 C -0.200 4.200 17 N -0.583 5.583 18 Si 0.777 3.223 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.072 4.072 23 C -0.147 4.147 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.083 0.917 27 H 0.187 0.813 28 H 0.181 0.819 29 H 0.186 0.814 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.007 0.993 38 H 0.015 0.985 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.268 -16.127 -9.212 23.420 hybrid contribution 0.940 0.215 0.256 0.998 sum -13.328 -15.911 -8.956 22.606 Atomic orbital electron populations 1.21702 0.90693 1.06342 1.03264 1.30036 1.07012 1.20150 1.14882 1.08425 0.78406 0.80494 0.73638 1.93531 1.81852 1.75867 1.46837 1.93511 1.81901 1.75939 1.46661 1.30110 1.22177 1.04639 1.09433 1.21410 0.96411 0.94247 1.02707 1.21854 0.94164 0.97758 0.92168 1.61846 1.10158 1.13371 1.40897 1.21601 0.86178 0.97810 0.95705 0.91303 1.22389 1.01288 1.01232 0.98300 1.19069 0.93595 0.92372 0.95295 1.21488 1.28147 1.00221 1.03497 0.92451 1.25799 0.96124 0.96929 1.01159 1.70087 1.39845 1.08428 1.39973 0.85661 0.79022 0.76944 0.80708 1.19866 1.21511 1.19400 1.22118 0.93719 0.89904 1.01498 1.21687 0.97403 1.00172 0.95438 0.91356 0.87278 0.91713 0.81322 0.81895 0.81446 0.92058 0.89729 0.93014 0.93017 0.92636 0.90970 0.93136 0.99267 0.98532 0.93393 0.92899 0.90097 0.85357 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.92 71.98 0.71 -1.10 16 2 C -0.59 -5.61 5.93 71.98 0.43 -5.18 16 3 S 2.40 51.54 4.26 -56.49 -0.24 51.30 16 4 O -0.98 -30.71 18.05 -127.37 -2.30 -33.01 16 5 O -0.98 -27.63 18.10 -127.37 -2.31 -29.93 16 6 C -0.55 -11.09 2.69 30.67 0.08 -11.01 16 7 C -0.11 -3.25 5.38 30.64 0.16 -3.08 16 8 C 0.07 2.34 4.47 86.32 0.39 2.73 16 9 N -0.54 -18.97 4.26 -871.11 -3.71 -22.68 16 10 C 0.10 3.68 2.26 44.92 0.10 3.78 16 11 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 12 C -0.17 -5.34 8.40 71.98 0.60 -4.74 16 13 C 0.03 1.75 4.40 29.85 0.13 1.88 16 14 C -0.50 -28.24 8.80 25.60 0.23 -28.01 16 15 H 0.06 3.23 7.75 -2.91 -0.02 3.20 16 16 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 17 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 18 Si 0.95 46.52 29.54 68.60 2.03 48.54 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.06 1.36 5.18 86.33 0.45 1.80 16 23 C -0.11 -2.08 5.02 30.65 0.15 -1.92 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.17 0.45 8.14 -2.39 -0.02 0.44 16 28 H 0.16 0.75 6.84 -2.39 -0.02 0.73 16 29 H 0.17 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.05 1.47 6.57 -2.39 -0.02 1.46 16 33 H 0.05 2.15 6.28 -2.38 -0.01 2.14 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.75 6.93 -2.39 -0.02 1.74 16 36 H 0.05 1.58 6.44 -2.38 -0.02 1.57 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.00 -0.20 6.39 -2.39 -0.02 -0.22 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.05 1.04 6.98 -2.39 -0.02 1.02 16 41 H 0.08 1.89 7.98 -2.39 -0.02 1.88 16 42 H 0.13 1.02 6.56 -2.39 -0.02 1.00 16 43 H 0.07 1.72 8.13 -2.39 -0.02 1.71 16 Total: -1.00 -81.38 343.09 -1.38 -82.76 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.97 Total: 5.96 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 3.90 Total: -44.64 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.43 Total: -80.98 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -4.60 Total: -62.94 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.24 Total: 51.30 kcal Total: -81.38 -1.38 -82.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565044199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.724 kcal (2) G-P(sol) polarization free energy of solvation -81.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds