Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.46974 * 2 1 4 4 C 1.37097 * 120.00215 * 264.76683 * 3 2 1 5 5 H 1.07995 * 120.00113 * 138.84935 * 4 3 2 6 6 C 1.38947 * 119.99808 * 318.85638 * 4 3 2 7 7 N 1.31404 * 120.00518 * 341.82607 * 6 4 3 8 8 Si 1.86804 * 119.99724 * 161.82721 * 6 4 3 9 9 H 1.48500 * 109.47184 * 89.99959 * 8 6 4 10 10 H 1.48504 * 109.46910 * 210.00007 * 8 6 4 11 11 H 1.48498 * 109.47135 * 329.99479 * 8 6 4 12 12 C 1.34780 * 119.99829 * 84.77394 * 3 2 1 13 13 O 1.21289 * 119.99782 * 180.02562 * 12 3 2 14 14 C 1.50693 * 119.99895 * 359.97438 * 12 3 2 15 15 C 1.50703 * 109.46903 * 180.02562 * 14 12 3 16 16 C 1.38301 * 120.00573 * 270.02463 * 15 14 12 17 17 C 1.37965 * 119.95824 * 180.02562 * 16 15 14 18 18 C 1.39154 * 120.21475 * 0.03983 * 17 16 15 19 19 C 1.38368 * 119.69271 * 359.82156 * 18 17 16 20 20 C 1.38102 * 120.01315 * 90.00129 * 15 14 12 21 21 C 1.50771 * 121.40794 * 180.30360 * 19 18 17 22 22 C 1.53064 * 109.69209 * 342.21750 * 21 19 18 23 23 C 1.53406 * 108.29669 * 48.18232 * 22 21 19 24 24 O 1.35844 * 118.49522 * 179.75546 * 18 17 16 25 25 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47724 * 300.00113 * 1 2 3 27 27 H 1.09005 * 109.47592 * 59.99862 * 1 2 3 28 28 H 1.08999 * 109.46973 * 240.00419 * 2 1 3 29 29 H 1.08996 * 109.47321 * 119.99604 * 2 1 3 30 30 H 0.97001 * 120.00851 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47221 * 60.00545 * 14 12 3 32 32 H 1.08999 * 109.47487 * 300.00592 * 14 12 3 33 33 H 1.08000 * 120.01863 * 0.05460 * 16 15 14 34 34 H 1.07995 * 119.89057 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.83973 * 0.02562 * 20 15 14 36 36 H 1.08998 * 109.43675 * 102.25692 * 21 19 18 37 37 H 1.08994 * 109.44195 * 222.13844 * 21 19 18 38 38 H 1.09002 * 109.66834 * 288.49934 * 22 21 19 39 39 H 1.09006 * 109.73246 * 167.89966 * 22 21 19 40 40 H 1.08993 * 109.68534 * 175.58551 * 23 22 21 41 41 H 1.09002 * 109.68065 * 55.07454 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0742 3.0218 -1.3535 6 6 3.0371 1.2843 -2.1604 7 7 3.6791 0.1819 -1.8451 8 14 3.0499 1.9006 -3.9238 9 1 4.2055 2.8121 -4.1213 10 1 3.1658 0.7462 -4.8508 11 1 1.7884 2.6333 -4.2012 12 6 2.1426 2.0520 1.1624 13 8 2.5464 3.1957 1.1623 14 6 1.7788 1.3814 2.4619 15 6 2.0064 2.3397 3.6026 16 6 3.2354 2.3823 4.2354 17 6 3.4425 3.2595 5.2799 18 6 2.4180 4.1022 5.7002 19 6 1.1904 4.0592 5.0633 20 6 0.9880 3.1758 4.0160 21 6 0.0558 4.9594 5.4825 22 6 0.3264 5.5116 6.8842 23 6 1.7638 6.0461 6.9220 24 8 2.6585 4.9485 6.7352 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 4.1599 -0.3117 -2.5279 31 1 2.4003 0.4967 2.6007 32 1 0.7294 1.0880 2.4381 33 1 4.0327 1.7296 3.9117 34 1 4.4025 3.2916 5.7735 35 1 0.0292 3.1406 3.5203 36 1 -0.0304 5.7864 4.7778 37 1 -0.8743 4.3913 5.4897 38 1 0.2106 4.7162 7.6205 39 1 -0.3719 6.3196 7.1025 40 1 1.9556 6.5159 7.8866 41 1 1.9056 6.7750 6.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581886031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = -55.717234 kcal Electronic energy + Delta-G solvation = -22922.084798 eV Core-core repulsion = 19573.824236 eV Total energy + Delta-G solvation = -3348.260563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49967 -38.71284 -37.22047 -34.86381 -34.24279 -32.29184 -31.51160 -30.25688 -29.39112 -27.54844 -25.49751 -24.55160 -23.12053 -22.34976 -21.93810 -19.79230 -18.56725 -17.58708 -16.72958 -16.52028 -15.83669 -15.64879 -14.98468 -14.64176 -14.34035 -14.16950 -14.00001 -13.63048 -13.48001 -13.17691 -13.02132 -12.86626 -12.58982 -12.18215 -11.95120 -11.75483 -11.43974 -11.21779 -11.08605 -11.00972 -10.96480 -10.83597 -10.57952 -10.34631 -10.30734 -10.25372 -10.05969 -8.88134 -8.47424 -8.37107 -7.69711 -7.36540 -6.28070 -3.96035 1.64525 1.73641 3.19977 3.27846 3.32624 3.39514 3.97440 4.01761 4.22777 4.58767 4.66480 4.74640 4.97264 4.99314 5.08465 5.16404 5.29966 5.36465 5.43963 5.53098 5.60959 5.72494 5.80014 5.84102 5.90261 5.94732 5.96672 6.05602 6.18575 6.23938 6.35468 6.38550 6.53424 6.57342 6.69343 6.88950 7.04179 7.08295 7.24415 7.62019 7.64602 8.34919 8.57957 9.25800 9.45435 10.09214 10.77180 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.003689 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.679778 B = 7589.160814 C = 7730.211932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.445 5.445 4 C -0.307 4.307 5 H 0.086 0.914 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.466 3.534 13 O -0.572 6.572 14 C -0.099 4.099 15 C -0.071 4.071 16 C -0.074 4.074 17 C -0.146 4.146 18 C 0.116 3.884 19 C -0.161 4.161 20 C -0.073 4.073 21 C -0.076 4.076 22 C -0.158 4.158 23 C 0.061 3.939 24 O -0.321 6.321 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.266 0.734 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 3.053 14.327 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.165 5.165 4 C -0.435 4.435 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.253 3.747 13 O -0.454 6.454 14 C -0.139 4.139 15 C -0.072 4.072 16 C -0.092 4.092 17 C -0.165 4.165 18 C 0.072 3.928 19 C -0.162 4.162 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.235 6.235 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.527 3.469 14.340 16.133 hybrid contribution -0.130 0.161 -1.083 1.102 sum -6.657 3.630 13.257 15.272 Atomic orbital electron populations 1.22231 0.98346 1.00312 1.01485 1.21445 0.91522 0.85733 1.03423 1.43455 1.56540 1.11736 1.04771 1.19341 1.34717 0.98460 0.90966 0.89637 1.25400 0.94118 0.96574 1.00478 1.69919 1.29634 1.17621 1.33931 0.86110 0.78944 0.78312 0.82368 1.20320 1.20870 1.19456 1.20266 0.81961 0.87948 0.84478 1.90540 1.49527 1.18634 1.86746 1.20723 1.02828 0.97859 0.92528 1.19345 0.93815 0.97924 0.96077 1.20789 0.96503 0.97754 0.94142 1.20460 0.97885 0.98730 0.99392 1.18568 0.92949 0.92311 0.88959 1.19634 0.94444 1.01884 1.00198 1.20663 0.99092 0.94376 0.95032 1.20430 0.96555 0.98335 0.95988 1.22216 0.97341 1.01870 0.98123 1.22894 0.88681 0.87464 1.02365 1.85951 1.52851 1.37968 1.46736 0.93123 0.93897 0.92457 0.87927 0.93357 0.92354 0.89275 0.89635 0.85600 0.85646 0.86290 0.90623 0.90273 0.90611 0.90081 0.87963 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.15 37.15 0.38 -2.53 16 2 C 0.10 2.20 5.41 -4.04 -0.02 2.18 16 3 N -0.44 -11.26 2.50 -114.82 -0.29 -11.55 16 4 C -0.31 -8.58 8.84 -14.93 -0.13 -8.71 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.72 11.61 55.50 0.64 -23.07 16 8 Si 0.92 20.80 29.59 -169.99 -5.03 15.77 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.47 11.45 7.59 -10.99 -0.08 11.37 16 13 O -0.57 -16.30 15.95 5.55 0.09 -16.21 16 14 C -0.10 -1.86 4.44 -29.04 -0.13 -1.99 16 15 C -0.07 -1.29 4.37 -104.65 -0.46 -1.75 16 16 C -0.07 -1.28 9.70 -39.66 -0.38 -1.67 16 17 C -0.15 -2.37 9.94 -39.34 -0.39 -2.77 16 18 C 0.12 1.86 6.47 -39.19 -0.25 1.61 16 19 C -0.16 -2.47 5.75 -104.44 -0.60 -3.07 16 20 C -0.07 -1.23 9.32 -39.53 -0.37 -1.60 16 21 C -0.08 -0.88 5.86 -27.82 -0.16 -1.05 16 22 C -0.16 -1.49 6.19 -26.49 -0.16 -1.65 16 23 C 0.06 0.64 7.03 37.37 0.26 0.90 16 24 O -0.32 -4.60 10.27 -19.25 -0.20 -4.79 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.70 6.60 -51.93 -0.34 0.35 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 29 H 0.05 0.93 6.66 -51.93 -0.35 0.59 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.09 1.54 7.36 -51.93 -0.38 1.16 16 32 H 0.09 1.40 6.48 -51.93 -0.34 1.07 16 33 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 34 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -32.72 335.52 -8.22 -40.94 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.90 Total: 3.64 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.60 Total: -9.78 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.36 Total: -34.63 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.11 Total: -21.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.72 -8.22 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581886031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.774 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds