Wall clock time and date at job start Tue Mar 31 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.46974 * 2 1 4 4 C 1.37097 * 120.00215 * 264.76683 * 3 2 1 5 5 H 1.07995 * 120.00113 * 138.84935 * 4 3 2 6 6 C 1.38947 * 119.99808 * 318.85638 * 4 3 2 7 7 N 1.31404 * 120.00518 * 341.82607 * 6 4 3 8 8 Si 1.86804 * 119.99724 * 161.82721 * 6 4 3 9 9 H 1.48500 * 109.47184 * 89.99959 * 8 6 4 10 10 H 1.48504 * 109.46910 * 210.00007 * 8 6 4 11 11 H 1.48498 * 109.47135 * 329.99479 * 8 6 4 12 12 C 1.34780 * 119.99829 * 84.77394 * 3 2 1 13 13 O 1.21289 * 119.99782 * 180.02562 * 12 3 2 14 14 C 1.50693 * 119.99895 * 359.97438 * 12 3 2 15 15 C 1.50703 * 109.46903 * 180.02562 * 14 12 3 16 16 C 1.38301 * 120.00573 * 270.02463 * 15 14 12 17 17 C 1.37965 * 119.95824 * 180.02562 * 16 15 14 18 18 C 1.39154 * 120.21475 * 0.03983 * 17 16 15 19 19 C 1.38368 * 119.69271 * 359.82156 * 18 17 16 20 20 C 1.38102 * 120.01315 * 90.00129 * 15 14 12 21 21 C 1.50771 * 121.40794 * 180.30360 * 19 18 17 22 22 C 1.53064 * 109.69209 * 342.21750 * 21 19 18 23 23 C 1.53406 * 108.29669 * 48.18232 * 22 21 19 24 24 O 1.35844 * 118.49522 * 179.75546 * 18 17 16 25 25 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47724 * 300.00113 * 1 2 3 27 27 H 1.09005 * 109.47592 * 59.99862 * 1 2 3 28 28 H 1.08999 * 109.46973 * 240.00419 * 2 1 3 29 29 H 1.08996 * 109.47321 * 119.99604 * 2 1 3 30 30 H 0.97001 * 120.00851 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47221 * 60.00545 * 14 12 3 32 32 H 1.08999 * 109.47487 * 300.00592 * 14 12 3 33 33 H 1.08000 * 120.01863 * 0.05460 * 16 15 14 34 34 H 1.07995 * 119.89057 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.83973 * 0.02562 * 20 15 14 36 36 H 1.08998 * 109.43675 * 102.25692 * 21 19 18 37 37 H 1.08994 * 109.44195 * 222.13844 * 21 19 18 38 38 H 1.09002 * 109.66834 * 288.49934 * 22 21 19 39 39 H 1.09006 * 109.73246 * 167.89966 * 22 21 19 40 40 H 1.08993 * 109.68534 * 175.58551 * 23 22 21 41 41 H 1.09002 * 109.68065 * 55.07454 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0742 3.0218 -1.3535 6 6 3.0371 1.2843 -2.1604 7 7 3.6791 0.1819 -1.8451 8 14 3.0499 1.9006 -3.9238 9 1 4.2055 2.8121 -4.1213 10 1 3.1658 0.7462 -4.8508 11 1 1.7884 2.6333 -4.2012 12 6 2.1426 2.0520 1.1624 13 8 2.5464 3.1957 1.1623 14 6 1.7788 1.3814 2.4619 15 6 2.0064 2.3397 3.6026 16 6 3.2354 2.3823 4.2354 17 6 3.4425 3.2595 5.2799 18 6 2.4180 4.1022 5.7002 19 6 1.1904 4.0592 5.0633 20 6 0.9880 3.1758 4.0160 21 6 0.0558 4.9594 5.4825 22 6 0.3264 5.5116 6.8842 23 6 1.7638 6.0461 6.9220 24 8 2.6585 4.9485 6.7352 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 4.1599 -0.3117 -2.5279 31 1 2.4003 0.4967 2.6007 32 1 0.7294 1.0880 2.4381 33 1 4.0327 1.7296 3.9117 34 1 4.4025 3.2916 5.7735 35 1 0.0292 3.1406 3.5203 36 1 -0.0304 5.7864 4.7778 37 1 -0.8743 4.3913 5.4897 38 1 0.2106 4.7162 7.6205 39 1 -0.3719 6.3196 7.1025 40 1 1.9556 6.5159 7.8866 41 1 1.9056 6.7750 6.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581886031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:44 Heat of formation + Delta-G solvation = -74.490747 kcal Electronic energy + Delta-G solvation = -22922.898879 eV Core-core repulsion = 19573.824236 eV Total energy + Delta-G solvation = -3349.074643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62727 -40.45092 -38.52640 -36.78301 -35.21238 -34.14157 -33.00588 -31.37130 -31.10364 -28.95603 -26.82616 -26.13423 -24.24695 -23.88237 -23.28406 -21.16059 -20.06438 -18.71083 -18.68263 -17.70572 -17.61927 -16.93665 -16.64958 -16.05042 -15.78836 -15.47589 -15.34704 -14.85514 -14.74224 -14.53528 -14.48289 -14.17261 -13.94783 -13.63148 -13.55130 -13.22430 -12.89952 -12.80389 -12.64167 -12.50150 -12.32016 -12.14387 -12.04058 -11.85602 -11.74238 -11.60402 -11.31582 -10.86776 -10.32282 -9.69605 -9.35792 -8.96222 -8.31579 -6.07909 0.40154 0.45327 1.37733 1.40644 1.53050 2.11444 2.30250 2.38240 2.74840 3.03664 3.25224 3.69049 3.76678 3.84121 3.95119 3.98163 4.18428 4.27373 4.33238 4.37509 4.46772 4.50603 4.61733 4.64490 4.68532 4.70113 4.76070 4.90669 4.93268 5.05795 5.09625 5.11767 5.19895 5.30043 5.33747 5.46871 5.48629 5.58413 5.72874 5.85735 6.26571 6.53311 6.60564 7.23110 7.51383 8.13828 8.71831 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.003689 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.679778 B = 7589.160814 C = 7730.211932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.457 5.457 4 C -0.341 4.341 5 H 0.058 0.942 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.978 3.022 9 H -0.281 1.281 10 H -0.266 1.266 11 H -0.266 1.266 12 C 0.453 3.547 13 O -0.623 6.623 14 C -0.083 4.083 15 C -0.096 4.096 16 C -0.090 4.090 17 C -0.157 4.157 18 C 0.110 3.890 19 C -0.165 4.165 20 C -0.085 4.085 21 C -0.080 4.080 22 C -0.150 4.150 23 C 0.049 3.951 24 O -0.332 6.332 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.272 0.728 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 3.045 15.416 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.022 4.022 3 N -0.177 5.177 4 C -0.469 4.469 5 H 0.076 0.924 6 C -0.198 4.198 7 N -0.530 5.530 8 Si 0.802 3.198 9 H -0.207 1.207 10 H -0.191 1.191 11 H -0.191 1.191 12 C 0.243 3.757 13 O -0.509 6.509 14 C -0.122 4.122 15 C -0.096 4.096 16 C -0.109 4.109 17 C -0.176 4.176 18 C 0.066 3.934 19 C -0.166 4.166 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.187 4.187 23 C -0.025 4.025 24 O -0.247 6.247 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.999 3.424 15.439 17.723 hybrid contribution 0.356 0.223 -1.350 1.413 sum -7.643 3.647 14.090 16.439 Atomic orbital electron populations 1.22119 0.95221 1.02550 1.01367 1.21570 0.94064 0.83501 1.03099 1.43754 1.56487 1.13026 1.04416 1.19301 1.36497 0.98020 0.93070 0.92434 1.26114 0.93201 0.96633 1.03822 1.69983 1.29538 1.18211 1.35224 0.85182 0.78679 0.78170 0.77770 1.20698 1.19088 1.19084 1.21203 0.80890 0.87493 0.86094 1.90490 1.51724 1.20963 1.87742 1.20595 1.04481 0.97801 0.89345 1.19436 0.94740 0.98998 0.96476 1.20919 0.96528 0.98519 0.94884 1.20683 0.98877 0.98692 0.99329 1.18746 0.93052 0.92401 0.89249 1.20053 0.95477 1.01730 0.99322 1.20898 0.99298 0.94486 0.95606 1.20564 0.95704 0.97926 0.97448 1.22212 0.97212 1.02807 0.96496 1.23291 0.88902 0.86346 1.04009 1.85939 1.54263 1.38622 1.45830 0.89629 0.92449 0.94130 0.90407 0.91416 0.91817 0.87940 0.87041 0.85505 0.84302 0.85270 0.90412 0.88669 0.90517 0.86862 0.84823 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 10.15 71.98 0.73 -4.44 16 2 C 0.10 4.27 5.41 86.38 0.47 4.74 16 3 N -0.46 -23.61 2.50 -635.56 -1.59 -25.20 16 4 C -0.34 -19.66 8.84 84.04 0.74 -18.91 16 5 H 0.06 3.56 7.82 -2.91 -0.02 3.54 16 6 C 0.00 0.25 4.95 84.93 0.42 0.68 16 7 N -0.89 -48.81 11.61 21.66 0.25 -48.56 16 8 Si 0.98 43.04 29.59 68.60 2.03 45.07 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.45 22.79 7.59 87.65 0.66 23.46 16 13 O -0.62 -36.95 15.95 -3.06 -0.05 -37.00 16 14 C -0.08 -3.06 4.44 29.10 0.13 -2.93 16 15 C -0.10 -3.50 4.37 -19.88 -0.09 -3.58 16 16 C -0.09 -3.20 9.70 22.22 0.22 -2.98 16 17 C -0.16 -5.14 9.94 22.43 0.22 -4.92 16 18 C 0.11 3.46 6.47 22.52 0.15 3.61 16 19 C -0.16 -4.92 5.75 -19.75 -0.11 -5.04 16 20 C -0.08 -2.81 9.32 22.30 0.21 -2.60 16 21 C -0.08 -1.68 5.86 29.89 0.18 -1.50 16 22 C -0.15 -2.35 6.19 30.75 0.19 -2.16 16 23 C 0.05 0.89 7.03 72.12 0.51 1.40 16 24 O -0.33 -9.05 10.27 -91.80 -0.94 -9.99 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.74 6.60 -2.39 -0.02 1.72 16 27 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.08 3.70 5.76 -2.39 -0.01 3.68 16 29 H 0.07 2.55 6.66 -2.39 -0.02 2.53 16 30 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.10 3.47 7.36 -2.38 -0.02 3.46 16 32 H 0.11 3.48 6.48 -2.39 -0.02 3.46 16 33 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.48 335.52 5.34 -68.14 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 1.02 Total: 22.73 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 4.62 Total: -15.19 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.34 Total: -73.76 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.99 Total: -46.99 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.48 5.34 -68.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581886031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.355 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds