Wall clock time and date at job start Tue Mar 31 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00262 * 2 1 4 4 C 1.38506 * 119.80116 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.65660 * 179.97438 * 4 3 2 6 6 C 1.37982 * 119.88385 * 0.21483 * 5 4 3 7 7 C 1.38979 * 120.70186 * 359.96155 * 6 5 4 8 8 C 1.37617 * 119.55638 * 359.67379 * 7 6 5 9 9 C 1.50808 * 122.37867 * 180.62596 * 8 7 6 10 10 N 1.46686 * 109.67823 * 349.01413 * 9 8 7 11 11 C 1.34784 * 121.34750 * 224.26033 * 10 9 8 12 12 O 1.21276 * 119.99951 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.47522 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47344 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00118 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00238 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47324 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47062 * 120.00109 * 19 17 15 22 22 H 1.48502 * 109.47159 * 239.99803 * 19 17 15 23 23 C 1.47242 * 117.30548 * 44.24012 * 10 9 8 24 24 C 1.50607 * 117.58441 * 179.56693 * 7 6 5 25 25 H 1.08993 * 109.47276 * 300.00079 * 1 2 3 26 26 H 1.09004 * 109.47029 * 59.99969 * 1 2 3 27 27 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.17212 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.05769 * 180.24492 * 5 4 3 30 30 H 1.08000 * 119.64758 * 179.97438 * 6 5 4 31 31 H 1.08990 * 109.43849 * 228.94877 * 9 8 7 32 32 H 1.09003 * 109.43595 * 109.07209 * 9 8 7 33 33 H 1.09007 * 109.47116 * 300.00097 * 13 11 10 34 34 H 1.08998 * 109.47249 * 59.99429 * 13 11 10 35 35 H 1.08998 * 109.46956 * 300.00483 * 14 13 11 36 36 H 1.09003 * 109.46849 * 59.99737 * 14 13 11 37 37 H 0.97002 * 120.00368 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.78272 * 176.07766 * 23 10 9 39 39 H 1.08999 * 109.82531 * 55.28662 * 23 10 9 40 40 H 1.09001 * 109.20689 * 39.98232 * 24 7 6 41 41 H 1.09000 * 109.20507 * 280.68662 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2877 2.3699 -0.0005 5 6 1.9179 3.5990 0.0000 6 6 3.2962 3.6649 -0.0034 7 6 4.0620 2.5052 -0.0066 8 6 3.4372 1.2790 0.0005 9 6 4.2052 -0.0187 0.0114 10 7 5.6243 0.2449 -0.2501 11 6 6.3335 -0.5190 -1.1046 12 8 5.7996 -1.4466 -1.6750 13 6 7.7899 -0.2205 -1.3513 14 6 8.3546 -1.2288 -2.3539 15 6 9.8107 -0.9299 -2.6010 16 1 10.2861 -0.1036 -2.0934 17 6 10.5365 -1.7119 -3.4744 18 7 9.9577 -2.7184 -4.0922 19 14 12.3417 -1.3418 -3.7802 20 1 12.7502 -0.1663 -2.9700 21 1 13.1606 -2.5188 -3.3937 22 1 12.5492 -1.0459 -5.2206 23 6 6.2425 1.3781 0.4582 24 6 5.5602 2.6588 -0.0203 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2092 2.3129 -0.0005 29 1 1.3330 4.5069 0.0036 30 1 3.7850 4.6280 -0.0034 31 1 3.8110 -0.6801 -0.7600 32 1 4.0985 -0.4951 0.9860 33 1 7.8912 0.7877 -1.7532 34 1 8.3399 -0.2945 -0.4132 35 1 8.2533 -2.2367 -1.9517 36 1 7.8045 -1.1551 -3.2921 37 1 10.4684 -3.2688 -4.7064 38 1 7.3073 1.4198 0.2290 39 1 6.1008 1.2640 1.5329 40 1 5.8423 3.4820 0.6361 41 1 5.8884 2.8821 -1.0355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590876769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:44 Heat of formation + Delta-G solvation = -55.743987 kcal Electronic energy + Delta-G solvation = -22628.545122 eV Core-core repulsion = 19280.283400 eV Total energy + Delta-G solvation = -3348.261723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78605 -39.30819 -37.89544 -35.76405 -33.49746 -32.33859 -31.90715 -30.70650 -29.02068 -27.62529 -26.44649 -24.83383 -23.79584 -22.01518 -21.79502 -20.33930 -18.42300 -17.76781 -16.95204 -16.41241 -16.22923 -16.00410 -15.59806 -15.28840 -15.04266 -14.39099 -14.28961 -13.94092 -13.89906 -13.48488 -13.20016 -12.80085 -12.62783 -12.20441 -12.13558 -11.96800 -11.93550 -11.73354 -11.33727 -11.13878 -11.02593 -10.92595 -10.83255 -10.54783 -9.92998 -9.58570 -9.13551 -8.95806 -8.78969 -8.48523 -8.29784 -8.21517 -5.93355 -3.97668 1.13275 1.25541 3.05990 3.25148 3.30434 3.34373 3.41574 3.44787 3.53392 4.48463 4.50130 4.53601 4.74971 4.80587 4.90368 4.93730 5.04123 5.13545 5.22100 5.25927 5.28194 5.41575 5.41872 5.50312 5.64563 5.70880 5.77633 5.93935 5.96344 6.12866 6.23903 6.25027 6.26239 6.43608 6.56241 6.75438 6.94893 7.19952 7.77763 7.80762 7.90017 8.10572 8.41406 8.78744 9.11123 9.65709 11.17656 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.003329 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.449751 B = 8410.035857 C = 9095.713647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.133 3.867 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.032 4.032 8 C -0.118 4.118 9 C 0.162 3.838 10 N -0.626 5.626 11 C 0.516 3.484 12 O -0.531 6.531 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.109 3.891 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.966 13.791 12.391 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.087 3.913 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.176 4.176 7 C -0.032 4.032 8 C -0.120 4.120 9 C 0.040 3.960 10 N -0.362 5.362 11 C 0.307 3.693 12 O -0.406 6.406 13 C -0.167 4.167 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.015 4.015 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.115 12.904 11.927 25.237 hybrid contribution 0.499 0.486 -0.186 0.721 sum -17.617 13.389 11.741 25.049 Atomic orbital electron populations 1.23057 0.78407 1.04041 1.01162 1.86106 1.21310 1.26740 1.88398 1.18883 0.91404 0.84405 0.96582 1.21112 0.99823 0.92367 1.10015 1.20805 0.94552 0.96900 0.97840 1.21073 0.93765 0.97855 1.04909 1.19337 0.95734 0.91389 0.96751 1.19240 0.90461 0.95832 1.06438 1.20028 0.80475 0.93196 1.02343 1.48279 1.09977 1.32243 1.45729 1.21566 0.90071 0.81017 0.76693 1.90665 1.72021 1.29684 1.48238 1.21874 0.88869 1.03174 1.02760 1.18917 0.94704 0.93330 0.93198 1.21252 0.95259 1.14324 1.25529 0.92549 1.25031 0.98343 0.95126 0.95936 1.70013 1.36166 1.18064 1.28564 0.86541 0.85325 0.78164 0.77956 1.19741 1.21041 1.21056 1.21682 0.98657 0.84620 0.96525 1.20907 0.90581 0.98887 1.03369 0.92748 0.92681 0.88136 0.85489 0.85885 0.85891 0.88033 0.90970 0.90255 0.90193 0.95787 0.95831 0.93027 0.88253 0.91028 0.89357 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.79 9.68 -19.43 -0.19 -3.97 16 3 C 0.13 1.66 6.65 -39.09 -0.26 1.40 16 4 C -0.21 -2.19 9.03 -39.52 -0.36 -2.54 16 5 C -0.08 -0.78 10.04 -39.71 -0.40 -1.18 16 6 C -0.16 -1.59 9.59 -39.40 -0.38 -1.97 16 7 C -0.03 -0.38 5.76 -104.62 -0.60 -0.98 16 8 C -0.12 -1.61 5.83 -104.41 -0.61 -2.21 16 9 C 0.16 2.49 5.68 -5.04 -0.03 2.46 16 10 N -0.63 -10.06 2.93 -174.38 -0.51 -10.57 16 11 C 0.52 10.59 7.72 -10.98 -0.08 10.51 16 12 O -0.53 -13.21 15.51 5.56 0.09 -13.13 16 13 C -0.13 -2.64 4.01 -27.89 -0.11 -2.75 16 14 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 15 C -0.53 -14.99 9.11 -34.44 -0.31 -15.31 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.11 1.28 6.35 -3.74 -0.02 1.25 16 24 C -0.10 -1.03 5.86 -28.03 -0.16 -1.20 16 25 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 26 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.13 0.99 6.27 -52.49 -0.33 0.66 16 29 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.12 0.97 8.05 -52.49 -0.42 0.55 16 31 H 0.10 1.81 7.03 -51.93 -0.37 1.44 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.50 7.93 -51.93 -0.41 1.08 16 34 H 0.08 1.50 7.78 -51.93 -0.40 1.10 16 35 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.10 1.11 6.05 -51.93 -0.31 0.79 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -35.58 336.83 -8.34 -43.92 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.96 Total: -2.24 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.56 Total: -8.88 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.22 Total: -37.52 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.10 Total: -17.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.58 -8.34 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590876769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.826 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds