Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00262 * 2 1 4 4 C 1.38506 * 119.80116 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.65660 * 179.97438 * 4 3 2 6 6 C 1.37982 * 119.88385 * 0.21483 * 5 4 3 7 7 C 1.38979 * 120.70186 * 359.96155 * 6 5 4 8 8 C 1.37617 * 119.55638 * 359.67379 * 7 6 5 9 9 C 1.50808 * 122.37867 * 180.62596 * 8 7 6 10 10 N 1.46686 * 109.67823 * 349.01413 * 9 8 7 11 11 C 1.34784 * 121.34750 * 224.26033 * 10 9 8 12 12 O 1.21276 * 119.99951 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.47522 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47344 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00118 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00238 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47324 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47062 * 120.00109 * 19 17 15 22 22 H 1.48502 * 109.47159 * 239.99803 * 19 17 15 23 23 C 1.47242 * 117.30548 * 44.24012 * 10 9 8 24 24 C 1.50607 * 117.58441 * 179.56693 * 7 6 5 25 25 H 1.08993 * 109.47276 * 300.00079 * 1 2 3 26 26 H 1.09004 * 109.47029 * 59.99969 * 1 2 3 27 27 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.17212 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.05769 * 180.24492 * 5 4 3 30 30 H 1.08000 * 119.64758 * 179.97438 * 6 5 4 31 31 H 1.08990 * 109.43849 * 228.94877 * 9 8 7 32 32 H 1.09003 * 109.43595 * 109.07209 * 9 8 7 33 33 H 1.09007 * 109.47116 * 300.00097 * 13 11 10 34 34 H 1.08998 * 109.47249 * 59.99429 * 13 11 10 35 35 H 1.08998 * 109.46956 * 300.00483 * 14 13 11 36 36 H 1.09003 * 109.46849 * 59.99737 * 14 13 11 37 37 H 0.97002 * 120.00368 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.78272 * 176.07766 * 23 10 9 39 39 H 1.08999 * 109.82531 * 55.28662 * 23 10 9 40 40 H 1.09001 * 109.20689 * 39.98232 * 24 7 6 41 41 H 1.09000 * 109.20507 * 280.68662 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2877 2.3699 -0.0005 5 6 1.9179 3.5990 0.0000 6 6 3.2962 3.6649 -0.0034 7 6 4.0620 2.5052 -0.0066 8 6 3.4372 1.2790 0.0005 9 6 4.2052 -0.0187 0.0114 10 7 5.6243 0.2449 -0.2501 11 6 6.3335 -0.5190 -1.1046 12 8 5.7996 -1.4466 -1.6750 13 6 7.7899 -0.2205 -1.3513 14 6 8.3546 -1.2288 -2.3539 15 6 9.8107 -0.9299 -2.6010 16 1 10.2861 -0.1036 -2.0934 17 6 10.5365 -1.7119 -3.4744 18 7 9.9577 -2.7184 -4.0922 19 14 12.3417 -1.3418 -3.7802 20 1 12.7502 -0.1663 -2.9700 21 1 13.1606 -2.5188 -3.3937 22 1 12.5492 -1.0459 -5.2206 23 6 6.2425 1.3781 0.4582 24 6 5.5602 2.6588 -0.0203 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2092 2.3129 -0.0005 29 1 1.3330 4.5069 0.0036 30 1 3.7850 4.6280 -0.0034 31 1 3.8110 -0.6801 -0.7600 32 1 4.0985 -0.4951 0.9860 33 1 7.8912 0.7877 -1.7532 34 1 8.3399 -0.2945 -0.4132 35 1 8.2533 -2.2367 -1.9517 36 1 7.8045 -1.1551 -3.2921 37 1 10.4684 -3.2688 -4.7064 38 1 7.3073 1.4198 0.2290 39 1 6.1008 1.2640 1.5329 40 1 5.8423 3.4820 0.6361 41 1 5.8884 2.8821 -1.0355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590876769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = -78.742417 kcal Electronic energy + Delta-G solvation = -22629.542409 eV Core-core repulsion = 19280.283400 eV Total energy + Delta-G solvation = -3349.259010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75474 -40.61508 -38.89937 -36.94026 -35.60494 -33.45055 -33.20464 -32.31450 -29.89934 -28.53961 -27.91465 -26.37740 -24.74465 -23.58913 -22.82941 -21.60233 -19.65905 -19.00068 -18.43754 -17.76202 -17.26066 -17.15960 -16.76424 -16.54206 -16.40250 -16.04496 -15.52883 -14.91154 -14.79380 -14.69023 -14.48302 -14.16780 -14.01925 -13.57908 -13.44252 -13.18397 -12.95400 -12.83464 -12.75581 -12.53609 -12.41032 -12.17472 -11.94057 -11.86204 -11.72782 -11.53178 -11.27363 -10.71395 -10.57031 -9.77945 -9.61794 -9.08715 -8.16689 -6.31041 0.30777 0.44406 1.43488 1.45293 1.58629 1.65001 1.96662 2.35277 2.44498 2.72429 3.16433 3.58103 3.69349 3.84755 3.98943 4.10385 4.21079 4.28585 4.36105 4.36994 4.39566 4.44411 4.47490 4.53083 4.59461 4.65181 4.70435 4.73882 4.86086 4.95427 5.07894 5.17591 5.26870 5.46110 5.49928 5.57238 5.62170 5.63610 5.83930 5.85816 6.17851 6.38187 6.44192 6.87545 7.22080 7.39350 8.96496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.003329 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.449751 B = 8410.035857 C = 9095.713647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.043 4.043 8 C -0.150 4.150 9 C 0.168 3.832 10 N -0.615 5.615 11 C 0.512 3.488 12 O -0.592 6.592 13 C -0.112 4.112 14 C 0.042 3.958 15 C -0.539 4.539 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.940 5.940 19 Si 0.976 3.024 20 H -0.249 1.249 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.098 3.902 24 C -0.096 4.096 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.108 0.892 35 H -0.020 1.020 36 H -0.021 1.021 37 H 0.262 0.738 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 17.663 14.066 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.070 3.930 4 C -0.235 4.235 5 C -0.096 4.096 6 C -0.177 4.177 7 C -0.044 4.044 8 C -0.152 4.152 9 C 0.045 3.955 10 N -0.348 5.348 11 C 0.303 3.697 12 O -0.472 6.472 13 C -0.151 4.151 14 C 0.004 3.996 15 C -0.577 4.577 16 H 0.098 0.902 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.800 3.200 20 H -0.173 1.173 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.023 4.023 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.126 0.874 35 H -0.001 1.001 36 H -0.003 1.003 37 H 0.071 0.929 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.145 0.855 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.619 16.844 13.660 27.941 hybrid contribution 0.187 -0.695 -0.664 0.979 sum -17.432 16.149 12.996 27.084 Atomic orbital electron populations 1.23324 0.76353 1.05325 1.02400 1.86072 1.23623 1.27334 1.88547 1.19119 0.91415 0.85304 0.97179 1.21432 1.01001 0.91880 1.09139 1.21265 0.94791 0.97714 0.95872 1.21407 0.94151 0.98233 1.03885 1.19605 0.96772 0.91314 0.96675 1.19225 0.91104 0.95340 1.09503 1.19898 0.80079 0.94404 1.01116 1.48238 1.10221 1.32222 1.44138 1.21511 0.90238 0.80870 0.77098 1.90640 1.73025 1.32539 1.51039 1.21634 0.89107 1.02201 1.02187 1.18704 0.94922 0.93153 0.92792 1.21732 0.95620 1.14815 1.25540 0.90216 1.26182 1.04232 0.94695 0.95546 1.70201 1.38654 1.19582 1.29546 0.85239 0.78067 0.78680 0.78035 1.17255 1.20724 1.20744 1.22106 0.99190 0.83602 0.97394 1.20951 0.89489 0.98947 1.03906 0.90956 0.91822 0.87035 0.83187 0.82655 0.83097 0.91844 0.90545 0.87571 0.87397 1.00113 1.00266 0.92908 0.87133 0.88759 0.85510 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.56 9.68 -92.44 -0.90 -9.46 16 3 C 0.12 2.86 6.65 22.59 0.15 3.01 16 4 C -0.22 -3.94 9.03 22.31 0.20 -3.74 16 5 C -0.08 -1.21 10.04 22.18 0.22 -0.99 16 6 C -0.16 -2.64 9.59 22.39 0.21 -2.43 16 7 C -0.04 -0.94 5.76 -19.86 -0.11 -1.06 16 8 C -0.15 -4.07 5.83 -19.73 -0.11 -4.19 16 9 C 0.17 5.42 5.68 85.63 0.49 5.90 16 10 N -0.61 -19.97 2.93 -823.99 -2.42 -22.39 16 11 C 0.51 21.93 7.72 87.65 0.68 22.61 16 12 O -0.59 -31.95 15.51 -3.02 -0.05 -31.99 16 13 C -0.11 -4.67 4.01 29.85 0.12 -4.55 16 14 C 0.04 2.41 4.26 29.85 0.13 2.53 16 15 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 16 H 0.08 4.11 7.74 -2.91 -0.02 4.09 16 17 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 18 N -0.94 -60.67 13.29 21.45 0.28 -60.38 16 19 Si 0.98 44.57 29.54 68.60 2.03 46.60 16 20 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 C 0.10 2.09 6.35 86.17 0.55 2.64 16 24 C -0.10 -1.69 5.86 29.75 0.17 -1.52 16 25 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 26 H 0.06 0.79 7.65 -2.39 -0.02 0.78 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.15 1.91 6.27 -2.91 -0.02 1.89 16 29 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.15 1.63 8.05 -2.91 -0.02 1.60 16 31 H 0.06 2.50 7.03 -2.39 -0.02 2.49 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 3.85 7.93 -2.38 -0.02 3.83 16 34 H 0.11 3.89 7.78 -2.39 -0.02 3.87 16 35 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 36 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 37 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.11 2.11 6.05 -2.39 -0.01 2.10 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.13 1.30 8.11 -2.39 -0.02 1.28 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -83.74 336.83 4.47 -79.27 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.02 Total: 9.56 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.50 Total: -11.20 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.13 Total: -82.77 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.94 Total: -41.45 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -83.74 4.47 -79.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590876769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.525 kcal (2) G-P(sol) polarization free energy of solvation -83.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds