Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47493 * 2 1 4 4 C 1.46501 * 119.99406 * 278.33750 * 3 2 1 5 5 C 1.50696 * 109.47333 * 269.99805 * 4 3 2 6 6 H 1.07999 * 119.99608 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00394 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99532 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00099 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47006 * 90.00373 * 9 7 5 11 11 H 1.48508 * 109.47141 * 210.00017 * 9 7 5 12 12 H 1.48500 * 109.47253 * 330.00127 * 9 7 5 13 13 C 1.34771 * 120.00220 * 98.33416 * 3 2 1 14 14 O 1.21551 * 119.99735 * 186.32779 * 13 3 2 15 15 C 1.47841 * 120.00054 * 6.32849 * 13 3 2 16 16 C 1.39596 * 120.22972 * 330.48208 * 15 13 3 17 17 C 1.37750 * 119.74964 * 180.38195 * 16 15 13 18 18 C 1.38809 * 120.50372 * 359.47675 * 17 16 15 19 19 C 1.38072 * 120.00118 * 0.03002 * 18 17 16 20 20 C 1.38331 * 120.02776 * 0.33954 * 19 18 17 21 21 C 1.50770 * 121.33370 * 180.58876 * 19 18 17 22 22 C 1.52960 * 109.76591 * 342.65462 * 21 19 18 23 23 O 1.43209 * 108.46214 * 49.33451 * 22 21 19 24 24 C 1.42701 * 113.16724 * 289.31869 * 23 22 21 25 25 H 1.08994 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47385 * 300.00695 * 1 2 3 27 27 H 1.09006 * 109.47299 * 60.00145 * 1 2 3 28 28 H 1.09000 * 109.47636 * 239.99758 * 2 1 3 29 29 H 1.09006 * 109.47299 * 119.99855 * 2 1 3 30 30 H 1.09005 * 109.47552 * 29.99950 * 4 3 2 31 31 H 1.09001 * 109.46988 * 149.99840 * 4 3 2 32 32 H 0.97001 * 119.99927 * 179.97438 * 8 7 5 33 33 H 1.08003 * 120.12540 * 0.12527 * 16 15 13 34 34 H 1.07998 * 119.74621 * 179.74598 * 17 16 15 35 35 H 1.07995 * 119.91678 * 179.81788 * 20 19 18 36 36 H 1.09003 * 109.42249 * 102.74468 * 21 19 18 37 37 H 1.09002 * 109.42112 * 222.62209 * 21 19 18 38 38 H 1.08997 * 109.63861 * 169.02316 * 22 21 19 39 39 H 1.08997 * 109.63408 * 289.64548 * 22 21 19 40 40 H 1.09004 * 109.32899 * 291.56609 * 24 23 22 41 41 H 1.08999 * 109.33560 * 172.07004 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0891 2.1330 -1.2554 5 6 3.4387 1.9222 -1.8919 6 1 4.1707 1.2916 -1.4093 7 6 3.7394 2.5352 -3.0898 8 7 2.8481 3.3035 -3.6771 9 14 5.4125 2.2744 -3.8783 10 1 5.3563 1.0961 -4.7803 11 1 5.7839 3.4801 -4.6617 12 1 6.4274 2.0397 -2.8199 13 6 2.4025 1.9602 1.1548 14 8 2.6981 3.1390 1.1747 15 6 2.4645 1.1615 2.3973 16 6 1.6084 0.0735 2.5769 17 6 1.6691 -0.6591 3.7418 18 6 2.5825 -0.3304 4.7341 19 6 3.4387 0.7384 4.5577 20 6 3.3820 1.4863 3.3954 21 6 4.4511 1.1138 5.6099 22 6 4.0754 0.4663 6.9437 23 8 3.8154 -0.9235 6.7159 24 6 2.6071 -1.1575 5.9936 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3095 1.7838 -1.9325 31 1 1.9451 3.1942 -1.0520 32 1 3.0597 3.7350 -4.5197 33 1 0.8983 -0.1903 1.8071 34 1 1.0040 -1.4983 3.8824 35 1 4.0505 2.3237 3.2606 36 1 5.4379 0.7665 5.3036 37 1 4.4682 2.1975 5.7261 38 1 4.8999 0.5739 7.6484 39 1 3.1820 0.9452 7.3445 40 1 1.7554 -0.8887 6.6185 41 1 2.5413 -2.2139 5.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596889820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -32.575455 kcal Electronic energy + Delta-G solvation = -23011.860197 eV Core-core repulsion = 19664.603137 eV Total energy + Delta-G solvation = -3347.257060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60747 -39.19587 -37.15124 -35.63027 -33.30711 -32.82194 -31.71360 -30.43394 -29.35306 -27.55033 -25.77820 -24.09262 -23.24459 -22.93123 -22.04299 -20.59576 -18.76061 -17.06786 -16.86631 -16.43581 -16.24212 -15.85803 -15.49355 -14.89783 -14.58197 -14.45342 -14.15401 -13.87412 -13.59792 -13.30679 -13.12351 -12.91434 -12.39974 -12.32322 -12.06185 -11.92614 -11.66616 -11.50597 -11.21337 -11.13629 -10.92381 -10.86208 -10.63100 -10.42501 -10.13401 -9.94133 -9.65273 -9.02662 -8.75861 -8.50328 -8.44035 -7.69022 -6.05782 -4.10781 1.01238 1.35289 3.23068 3.29428 3.36064 3.40733 3.62924 3.78922 4.06823 4.43082 4.50936 4.54282 4.69590 4.82985 4.97586 5.00454 5.11804 5.15768 5.25422 5.29061 5.34321 5.43078 5.51901 5.54955 5.64591 5.71422 5.72266 5.92723 5.95208 6.00384 6.21082 6.27343 6.42782 6.47886 6.50537 6.84258 6.90280 7.07524 7.43288 7.51488 7.90792 8.21554 8.37124 8.86830 9.03831 9.54393 11.02286 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.004048 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.153204 B = 6916.133913 C = 7557.829791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 N -0.586 5.586 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.546 3.454 14 O -0.539 6.539 15 C -0.111 4.111 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.064 4.064 21 C -0.115 4.115 22 C 0.060 3.940 23 O -0.377 6.377 24 C 0.102 3.898 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 -10.269 18.416 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.050 4.050 3 N -0.317 5.317 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.333 3.667 14 O -0.417 6.417 15 C -0.115 4.115 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.083 4.083 21 C -0.152 4.152 22 C -0.017 4.017 23 O -0.295 6.295 24 C 0.026 3.974 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.974 -9.662 18.273 20.883 hybrid contribution 0.718 0.105 -0.870 1.133 sum -2.256 -9.557 17.403 19.982 Atomic orbital electron populations 1.22289 0.96583 1.01817 1.02832 1.22257 0.93704 0.84898 1.04114 1.48125 1.61586 1.13238 1.08722 1.19317 0.97108 0.92744 0.78213 1.21441 0.99789 1.29773 1.05739 0.92439 1.24930 0.97315 0.94849 0.96936 1.69935 1.34420 1.31082 1.17851 0.86492 0.84060 0.77633 0.79230 1.20594 1.21039 1.19887 1.18166 0.78445 0.86979 0.83129 1.90739 1.49581 1.15676 1.85705 1.20245 0.98354 0.96946 0.95925 1.22421 0.99783 0.93957 0.97854 1.20908 0.99072 1.00805 0.93278 1.20351 0.96965 0.96711 0.97198 1.19374 0.97583 0.95628 0.95857 1.21166 0.97175 0.98512 0.91433 1.21124 0.98418 1.01690 0.93941 1.22638 1.01132 0.81871 0.96053 1.88051 1.41918 1.24592 1.74958 1.21442 0.87434 0.99418 0.89129 0.91718 0.92435 0.91275 0.90198 0.88783 0.94797 0.93606 0.92687 0.82004 0.85541 0.84936 0.89553 0.89473 0.88280 0.92584 0.91727 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.13 37.15 0.34 -2.04 16 2 C 0.07 1.21 5.58 -4.04 -0.02 1.19 16 3 N -0.59 -12.77 2.46 -176.17 -0.43 -13.20 16 4 C 0.25 6.48 5.22 -5.19 -0.03 6.45 16 5 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.55 12.10 7.46 -12.33 -0.09 12.00 16 14 O -0.54 -14.13 16.26 5.32 0.09 -14.05 16 15 C -0.11 -1.95 5.58 -105.03 -0.59 -2.54 16 16 C -0.12 -1.70 7.50 -39.25 -0.29 -2.00 16 17 C -0.12 -1.41 9.65 -39.55 -0.38 -1.79 16 18 C -0.11 -1.33 5.82 -104.47 -0.61 -1.94 16 19 C -0.08 -1.12 5.77 -104.61 -0.60 -1.72 16 20 C -0.06 -1.03 9.22 -39.11 -0.36 -1.39 16 21 C -0.11 -1.19 6.00 -27.87 -0.17 -1.36 16 22 C 0.06 0.53 6.85 37.14 0.25 0.79 16 23 O -0.38 -4.08 10.80 -35.23 -0.38 -4.47 16 24 C 0.10 0.97 6.65 36.01 0.24 1.20 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.74 7.07 -51.93 -0.37 0.38 16 27 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 28 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 29 H 0.09 1.36 4.02 -52.04 -0.21 1.15 16 30 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 31 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.16 2.04 2.54 -52.48 -0.13 1.91 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 2.19 7.92 -52.49 -0.42 1.78 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -34.17 332.86 -8.40 -42.57 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.67 Total: -0.01 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.73 Total: -6.92 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.30 Total: -39.11 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.29 Total: -18.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.17 -8.40 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.995 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds