Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47493 * 2 1 4 4 C 1.46501 * 119.99406 * 278.33750 * 3 2 1 5 5 C 1.50696 * 109.47333 * 269.99805 * 4 3 2 6 6 H 1.07999 * 119.99608 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00394 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99532 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00099 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47006 * 90.00373 * 9 7 5 11 11 H 1.48508 * 109.47141 * 210.00017 * 9 7 5 12 12 H 1.48500 * 109.47253 * 330.00127 * 9 7 5 13 13 C 1.34771 * 120.00220 * 98.33416 * 3 2 1 14 14 O 1.21551 * 119.99735 * 186.32779 * 13 3 2 15 15 C 1.47841 * 120.00054 * 6.32849 * 13 3 2 16 16 C 1.39596 * 120.22972 * 330.48208 * 15 13 3 17 17 C 1.37750 * 119.74964 * 180.38195 * 16 15 13 18 18 C 1.38809 * 120.50372 * 359.47675 * 17 16 15 19 19 C 1.38072 * 120.00118 * 0.03002 * 18 17 16 20 20 C 1.38331 * 120.02776 * 0.33954 * 19 18 17 21 21 C 1.50770 * 121.33370 * 180.58876 * 19 18 17 22 22 C 1.52960 * 109.76591 * 342.65462 * 21 19 18 23 23 O 1.43209 * 108.46214 * 49.33451 * 22 21 19 24 24 C 1.42701 * 113.16724 * 289.31869 * 23 22 21 25 25 H 1.08994 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47385 * 300.00695 * 1 2 3 27 27 H 1.09006 * 109.47299 * 60.00145 * 1 2 3 28 28 H 1.09000 * 109.47636 * 239.99758 * 2 1 3 29 29 H 1.09006 * 109.47299 * 119.99855 * 2 1 3 30 30 H 1.09005 * 109.47552 * 29.99950 * 4 3 2 31 31 H 1.09001 * 109.46988 * 149.99840 * 4 3 2 32 32 H 0.97001 * 119.99927 * 179.97438 * 8 7 5 33 33 H 1.08003 * 120.12540 * 0.12527 * 16 15 13 34 34 H 1.07998 * 119.74621 * 179.74598 * 17 16 15 35 35 H 1.07995 * 119.91678 * 179.81788 * 20 19 18 36 36 H 1.09003 * 109.42249 * 102.74468 * 21 19 18 37 37 H 1.09002 * 109.42112 * 222.62209 * 21 19 18 38 38 H 1.08997 * 109.63861 * 169.02316 * 22 21 19 39 39 H 1.08997 * 109.63408 * 289.64548 * 22 21 19 40 40 H 1.09004 * 109.32899 * 291.56609 * 24 23 22 41 41 H 1.08999 * 109.33560 * 172.07004 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0891 2.1330 -1.2554 5 6 3.4387 1.9222 -1.8919 6 1 4.1707 1.2916 -1.4093 7 6 3.7394 2.5352 -3.0898 8 7 2.8481 3.3035 -3.6771 9 14 5.4125 2.2744 -3.8783 10 1 5.3563 1.0961 -4.7803 11 1 5.7839 3.4801 -4.6617 12 1 6.4274 2.0397 -2.8199 13 6 2.4025 1.9602 1.1548 14 8 2.6981 3.1390 1.1747 15 6 2.4645 1.1615 2.3973 16 6 1.6084 0.0735 2.5769 17 6 1.6691 -0.6591 3.7418 18 6 2.5825 -0.3304 4.7341 19 6 3.4387 0.7384 4.5577 20 6 3.3820 1.4863 3.3954 21 6 4.4511 1.1138 5.6099 22 6 4.0754 0.4663 6.9437 23 8 3.8154 -0.9235 6.7159 24 6 2.6071 -1.1575 5.9936 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3095 1.7838 -1.9325 31 1 1.9451 3.1942 -1.0520 32 1 3.0597 3.7350 -4.5197 33 1 0.8983 -0.1903 1.8071 34 1 1.0040 -1.4983 3.8824 35 1 4.0505 2.3237 3.2606 36 1 5.4379 0.7665 5.3036 37 1 4.4682 2.1975 5.7261 38 1 4.8999 0.5739 7.6484 39 1 3.1820 0.9452 7.3445 40 1 1.7554 -0.8887 6.6185 41 1 2.5413 -2.2139 5.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596889820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -54.713241 kcal Electronic energy + Delta-G solvation = -23012.820164 eV Core-core repulsion = 19664.603137 eV Total energy + Delta-G solvation = -3348.217026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78762 -40.47819 -38.25605 -37.29512 -35.10639 -34.02454 -32.95274 -31.88736 -30.31111 -29.40025 -27.04186 -25.06905 -24.94200 -24.23052 -23.22642 -21.75740 -20.22076 -18.68265 -18.10224 -18.04855 -17.42872 -17.01138 -16.63569 -16.41852 -16.09205 -15.79790 -15.36832 -15.08027 -14.78037 -14.61521 -14.38220 -14.02567 -13.88109 -13.61544 -13.34686 -13.29497 -13.12023 -12.97107 -12.69689 -12.53639 -12.47769 -12.20781 -12.07966 -11.85644 -11.77652 -11.52996 -10.91857 -10.68421 -10.55435 -9.86045 -9.60128 -9.48562 -8.27235 -6.42860 -0.15071 0.29581 1.33131 1.36349 1.46766 1.79623 2.20303 2.38045 2.71303 2.95575 3.02048 3.49692 3.62521 3.71501 3.84589 3.97465 4.04262 4.24854 4.29287 4.30067 4.44643 4.47141 4.53237 4.57302 4.74062 4.81630 4.83472 4.86987 4.90202 4.93527 4.98795 5.08339 5.12760 5.26428 5.33206 5.39952 5.46167 5.51116 5.77377 5.88241 6.00371 6.15002 6.62135 6.68119 7.19382 7.34887 8.80158 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.004048 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.153204 B = 6916.133913 C = 7557.829791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 N -0.591 5.591 4 C 0.261 3.739 5 C -0.549 4.549 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.536 3.464 14 O -0.600 6.600 15 C -0.141 4.141 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.104 4.104 19 C -0.090 4.090 20 C -0.084 4.084 21 C -0.117 4.117 22 C 0.061 3.939 23 O -0.392 6.392 24 C 0.100 3.900 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.028 0.972 31 H -0.002 1.002 32 H 0.269 0.731 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -13.697 20.514 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.055 4.055 3 N -0.320 5.320 4 C 0.140 3.860 5 C -0.587 4.587 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.326 3.674 14 O -0.483 6.483 15 C -0.144 4.144 16 C -0.139 4.139 17 C -0.125 4.125 18 C -0.105 4.105 19 C -0.090 4.090 20 C -0.103 4.103 21 C -0.154 4.154 22 C -0.015 4.015 23 O -0.310 6.310 24 C 0.024 3.976 25 H 0.128 0.872 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.193 0.807 34 H 0.192 0.808 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.267 -13.143 20.381 24.470 hybrid contribution 0.771 1.152 -1.426 1.989 sum -2.497 -11.991 18.955 22.568 Atomic orbital electron populations 1.22241 0.93855 1.04502 1.02094 1.22661 0.95912 0.81849 1.05099 1.48141 1.61693 1.15054 1.07162 1.18768 0.96275 0.90788 0.80165 1.21679 1.00507 1.30181 1.06371 0.93163 1.25864 1.01462 0.94222 0.97381 1.70051 1.36514 1.31638 1.18333 0.85389 0.78671 0.78346 0.78248 1.18501 1.20311 1.20014 1.19022 0.76982 0.86778 0.84637 1.90678 1.52261 1.18461 1.86888 1.19922 1.01438 0.98800 0.94206 1.22521 0.99043 0.92848 0.99490 1.21378 0.98752 1.00897 0.91441 1.20860 0.95523 0.95687 0.98410 1.19667 0.98507 0.95632 0.95167 1.21127 0.97398 0.98990 0.92801 1.21214 0.97544 1.02385 0.94283 1.22762 1.02513 0.81081 0.95144 1.88044 1.42658 1.25383 1.74963 1.21711 0.87881 1.00178 0.87866 0.87174 0.91764 0.93483 0.90970 0.86045 0.95365 0.98427 0.92233 0.80721 0.80793 0.87260 0.89749 0.88949 0.86191 0.91448 0.89267 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 9.13 71.98 0.66 -3.64 16 2 C 0.07 2.16 5.58 86.38 0.48 2.64 16 3 N -0.59 -27.15 2.46 -829.57 -2.04 -29.19 16 4 C 0.26 14.77 5.22 85.63 0.45 15.22 16 5 C -0.55 -32.92 9.39 25.60 0.24 -32.68 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.54 25.37 7.46 86.79 0.65 26.02 16 14 O -0.60 -34.44 16.26 -3.87 -0.06 -34.50 16 15 C -0.14 -5.05 5.58 -20.13 -0.11 -5.16 16 16 C -0.12 -3.12 7.50 22.48 0.17 -2.95 16 17 C -0.11 -1.99 9.65 22.29 0.22 -1.78 16 18 C -0.10 -2.10 5.82 -19.76 -0.11 -2.22 16 19 C -0.09 -2.27 5.77 -19.86 -0.11 -2.38 16 20 C -0.08 -2.81 9.22 22.57 0.21 -2.60 16 21 C -0.12 -2.29 6.00 29.86 0.18 -2.11 16 22 C 0.06 0.90 6.85 71.97 0.49 1.40 16 23 O -0.39 -6.95 10.80 -148.98 -1.61 -8.56 16 24 C 0.10 1.38 6.65 71.24 0.47 1.86 16 25 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.55 7.07 -2.39 -0.02 1.54 16 27 H 0.05 1.41 7.93 -2.38 -0.02 1.39 16 28 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 29 H 0.12 3.32 4.02 -2.49 -0.01 3.31 16 30 H 0.03 1.60 7.86 -2.38 -0.02 1.58 16 31 H 0.00 -0.16 7.34 -2.39 -0.02 -0.17 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.18 3.93 2.54 -2.91 -0.01 3.92 16 34 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.11 4.01 7.92 -2.91 -0.02 3.99 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 0.85 8.07 -2.39 -0.02 0.83 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -80.99 332.86 3.96 -77.03 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.04 Total: 11.38 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.33 Total: -7.32 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.76 Total: -85.95 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.67 Total: -43.07 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -80.99 3.96 -77.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.313 kcal (2) G-P(sol) polarization free energy of solvation -80.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds