Wall clock time and date at job start Tue Mar 31 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46986 * 2 1 4 4 C 1.46501 * 119.99634 * 277.51385 * 3 2 1 5 5 C 1.50695 * 109.47228 * 269.99925 * 4 3 2 6 6 H 1.08002 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00287 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00320 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99939 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47248 * 89.99968 * 9 7 5 11 11 H 1.48498 * 109.47264 * 210.00342 * 9 7 5 12 12 H 1.48502 * 109.46675 * 330.00230 * 9 7 5 13 13 C 1.34774 * 120.00229 * 97.51646 * 3 2 1 14 14 O 1.21580 * 120.00017 * 185.74625 * 13 3 2 15 15 C 1.47606 * 119.99764 * 5.74243 * 13 3 2 16 16 C 1.39752 * 120.26181 * 134.40816 * 15 13 3 17 17 C 1.37471 * 120.19563 * 179.80565 * 16 15 13 18 18 C 1.39583 * 120.43064 * 359.97438 * 17 16 15 19 19 C 1.39181 * 119.11124 * 0.40170 * 18 17 16 20 20 C 1.37310 * 120.92691 * 359.41626 * 19 18 17 21 21 C 1.51671 * 107.00058 * 179.00956 * 19 18 17 22 22 C 1.54699 * 101.92335 * 344.84293 * 21 19 18 23 23 H 1.08996 * 110.74715 * 266.96620 * 22 21 19 24 24 C 1.53005 * 110.90215 * 143.69486 * 22 21 19 25 25 O 1.36001 * 129.72809 * 180.98234 * 18 17 16 26 26 H 1.08997 * 109.47222 * 189.35236 * 1 2 3 27 27 H 1.09005 * 109.47217 * 309.34877 * 1 2 3 28 28 H 1.08997 * 109.47565 * 69.34907 * 1 2 3 29 29 H 1.08992 * 109.47190 * 240.00414 * 2 1 3 30 30 H 1.08996 * 109.47259 * 119.99678 * 2 1 3 31 31 H 1.09004 * 109.47556 * 30.00287 * 4 3 2 32 32 H 1.09001 * 109.46669 * 150.00196 * 4 3 2 33 33 H 0.96998 * 119.99777 * 179.97438 * 8 7 5 34 34 H 1.07998 * 119.90545 * 359.78019 * 16 15 13 35 35 H 1.08007 * 119.78368 * 179.97438 * 17 16 15 36 36 H 1.08002 * 120.06580 * 180.38874 * 20 19 18 37 37 H 1.08995 * 110.94611 * 103.00807 * 21 19 18 38 38 H 1.09009 * 110.93860 * 226.68897 * 21 19 18 39 39 H 1.09007 * 109.46953 * 305.07531 * 24 22 21 40 40 H 1.09000 * 109.46917 * 65.07461 * 24 22 21 41 41 H 1.08994 * 109.47431 * 185.07389 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1060 2.1271 -1.2579 5 6 3.4641 1.9134 -1.8750 6 1 4.1893 1.2845 -1.3800 7 6 3.7810 2.5207 -3.0716 8 7 4.9664 2.3345 -3.6099 9 14 2.5270 3.6090 -3.9275 10 1 2.6858 5.0095 -3.4599 11 1 2.7407 3.5501 -5.3958 12 1 1.1575 3.1325 -3.6071 13 6 2.3869 1.9658 1.1571 14 8 2.6924 3.1425 1.1735 15 6 2.4196 1.1773 2.4045 16 6 3.5126 1.2734 3.2700 17 6 3.5398 0.5415 4.4333 18 6 2.4783 -0.3031 4.7622 19 6 1.3961 -0.4006 3.8925 20 6 1.3572 0.3288 2.7298 21 6 0.4281 -1.3984 4.4992 22 6 1.3087 -2.0892 5.5671 23 1 1.7735 -2.9880 5.1618 24 6 0.4914 -2.4208 6.8173 25 8 2.3004 -1.0896 5.8574 26 1 -0.3633 -1.0140 0.1670 27 1 -0.3634 0.6516 0.7947 28 1 -0.3634 0.3624 -0.9616 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3357 1.7747 -1.9438 32 1 1.9593 3.1892 -1.0614 33 1 5.1891 2.7615 -4.4519 34 1 4.3386 1.9242 3.0240 35 1 4.3881 0.6205 5.0972 36 1 0.5076 0.2471 2.0680 37 1 -0.4175 -0.8893 4.9614 38 1 0.0881 -2.1152 3.7516 39 1 0.0108 -1.5154 7.1879 40 1 -0.2697 -3.1603 6.5682 41 1 1.1507 -2.8230 7.5864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596890286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:07 Heat of formation + Delta-G solvation = -31.384133 kcal Electronic energy + Delta-G solvation = -23025.548100 eV Core-core repulsion = 19678.342699 eV Total energy + Delta-G solvation = -3347.205400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32725 -39.47616 -36.96854 -35.53812 -33.40154 -32.74435 -31.28068 -30.76761 -30.01930 -27.71210 -26.74686 -23.75988 -23.01079 -22.36025 -21.91976 -21.33431 -18.72521 -17.71136 -17.03643 -16.89895 -16.71641 -15.84753 -15.29494 -14.72524 -14.67490 -14.22282 -13.80706 -13.67790 -13.44682 -13.17436 -13.12797 -12.83794 -12.63068 -12.58746 -12.39671 -12.18504 -12.12947 -11.82049 -11.54144 -11.41285 -11.04738 -10.97979 -10.72356 -10.60873 -10.48810 -10.15847 -9.55305 -9.15167 -8.88888 -8.59082 -8.14038 -7.73169 -6.08934 -4.07970 1.09551 1.30803 2.99250 3.25364 3.29279 3.35239 3.37336 3.67069 3.94945 4.22211 4.25757 4.39551 4.62555 4.75127 4.84839 4.96604 5.06311 5.18127 5.24742 5.25952 5.29571 5.39637 5.44130 5.50198 5.55748 5.61544 5.69075 5.73828 5.91722 5.97939 6.14467 6.16551 6.26938 6.39919 6.46376 6.53312 6.73436 6.95381 7.09038 7.33091 7.60455 8.21604 8.46368 8.89644 8.96390 9.51184 11.04374 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.003875 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.820854 B = 7224.234846 C = 7654.833180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 N -0.585 5.585 4 C 0.216 3.784 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.556 3.444 14 O -0.536 6.536 15 C -0.142 4.142 16 C -0.034 4.034 17 C -0.143 4.143 18 C 0.116 3.884 19 C -0.186 4.186 20 C -0.055 4.055 21 C -0.103 4.103 22 C 0.075 3.925 23 H 0.087 0.913 24 C -0.149 4.149 25 O -0.302 6.302 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.197 -11.448 17.143 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.315 5.315 4 C 0.095 3.905 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.343 3.657 14 O -0.414 6.414 15 C -0.145 4.145 16 C -0.052 4.052 17 C -0.162 4.162 18 C 0.071 3.929 19 C -0.187 4.187 20 C -0.073 4.073 21 C -0.140 4.140 22 C 0.019 3.981 23 H 0.105 0.895 24 C -0.206 4.206 25 O -0.217 6.217 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.826 -10.777 17.171 22.982 hybrid contribution -0.547 0.438 -0.716 1.002 sum -11.373 -10.339 16.454 22.517 Atomic orbital electron populations 1.22366 0.96837 1.01541 1.02573 1.21683 0.93392 0.84113 1.03591 1.47847 1.62517 1.13390 1.07765 1.19679 0.97871 0.92720 0.80207 1.21338 0.98374 1.31024 1.06167 0.90683 1.24851 0.95257 0.95946 0.96895 1.69898 1.20320 1.44118 1.19207 0.86852 0.82157 0.81857 0.78850 1.19849 1.21067 1.19050 1.18041 0.77903 0.86809 0.82993 1.90759 1.48907 1.15764 1.86007 1.20003 0.96776 1.00410 0.97346 1.20947 0.97325 0.95746 0.91215 1.20165 0.97538 0.99947 0.98539 1.19737 0.94099 0.92696 0.86387 1.20608 0.96699 1.03781 0.97573 1.20975 0.98603 0.92845 0.94852 1.21840 0.97657 0.96810 0.97687 1.23394 0.87675 0.90935 0.96047 0.89509 1.21879 0.99631 1.02640 0.96459 1.86806 1.59086 1.42669 1.33115 0.91750 0.92397 0.91765 0.89833 0.90381 0.95093 0.94340 0.92541 0.84137 0.85002 0.83915 0.89158 0.88984 0.91445 0.90280 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.14 37.16 0.34 -1.86 16 2 C 0.10 1.54 5.60 -4.04 -0.02 1.52 16 3 N -0.58 -12.27 2.46 -176.27 -0.43 -12.70 16 4 C 0.22 5.30 4.29 -5.20 -0.02 5.28 16 5 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 6 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.56 11.93 7.27 -12.44 -0.09 11.84 16 14 O -0.54 -13.67 16.55 5.29 0.09 -13.58 16 15 C -0.14 -2.43 5.08 -104.92 -0.53 -2.97 16 16 C -0.03 -0.53 9.67 -39.30 -0.38 -0.91 16 17 C -0.14 -1.95 10.05 -39.36 -0.40 -2.35 16 18 C 0.12 1.55 7.04 -38.73 -0.27 1.28 16 19 C -0.19 -2.31 6.26 -104.13 -0.65 -2.96 16 20 C -0.05 -0.76 7.40 -39.33 -0.29 -1.05 16 21 C -0.10 -0.90 6.65 -26.51 -0.18 -1.07 16 22 C 0.08 0.64 4.25 -25.83 -0.11 0.53 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.15 -0.90 9.61 37.16 0.36 -0.55 16 25 O -0.30 -3.68 10.80 -19.74 -0.21 -3.89 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.71 6.33 -51.93 -0.33 0.39 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 30 H 0.08 1.13 5.09 -51.93 -0.26 0.87 16 31 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 34 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.14 1.79 3.71 -52.49 -0.19 1.60 16 37 H 0.09 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -34.61 334.23 -7.84 -42.46 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.74 Total: -0.44 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.69 Total: -6.89 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.34 Total: -39.62 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.13 Total: -17.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.61 -7.84 -42.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596890286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.074 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds