Wall clock time and date at job start Tue Mar 31 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46986 * 2 1 4 4 C 1.46501 * 119.99634 * 277.51385 * 3 2 1 5 5 C 1.50695 * 109.47228 * 269.99925 * 4 3 2 6 6 H 1.08002 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00287 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00320 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99939 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47248 * 89.99968 * 9 7 5 11 11 H 1.48498 * 109.47264 * 210.00342 * 9 7 5 12 12 H 1.48502 * 109.46675 * 330.00230 * 9 7 5 13 13 C 1.34774 * 120.00229 * 97.51646 * 3 2 1 14 14 O 1.21580 * 120.00017 * 185.74625 * 13 3 2 15 15 C 1.47606 * 119.99764 * 5.74243 * 13 3 2 16 16 C 1.39752 * 120.26181 * 134.40816 * 15 13 3 17 17 C 1.37471 * 120.19563 * 179.80565 * 16 15 13 18 18 C 1.39583 * 120.43064 * 359.97438 * 17 16 15 19 19 C 1.39181 * 119.11124 * 0.40170 * 18 17 16 20 20 C 1.37310 * 120.92691 * 359.41626 * 19 18 17 21 21 C 1.51671 * 107.00058 * 179.00956 * 19 18 17 22 22 C 1.54699 * 101.92335 * 344.84293 * 21 19 18 23 23 H 1.08996 * 110.74715 * 266.96620 * 22 21 19 24 24 C 1.53005 * 110.90215 * 143.69486 * 22 21 19 25 25 O 1.36001 * 129.72809 * 180.98234 * 18 17 16 26 26 H 1.08997 * 109.47222 * 189.35236 * 1 2 3 27 27 H 1.09005 * 109.47217 * 309.34877 * 1 2 3 28 28 H 1.08997 * 109.47565 * 69.34907 * 1 2 3 29 29 H 1.08992 * 109.47190 * 240.00414 * 2 1 3 30 30 H 1.08996 * 109.47259 * 119.99678 * 2 1 3 31 31 H 1.09004 * 109.47556 * 30.00287 * 4 3 2 32 32 H 1.09001 * 109.46669 * 150.00196 * 4 3 2 33 33 H 0.96998 * 119.99777 * 179.97438 * 8 7 5 34 34 H 1.07998 * 119.90545 * 359.78019 * 16 15 13 35 35 H 1.08007 * 119.78368 * 179.97438 * 17 16 15 36 36 H 1.08002 * 120.06580 * 180.38874 * 20 19 18 37 37 H 1.08995 * 110.94611 * 103.00807 * 21 19 18 38 38 H 1.09009 * 110.93860 * 226.68897 * 21 19 18 39 39 H 1.09007 * 109.46953 * 305.07531 * 24 22 21 40 40 H 1.09000 * 109.46917 * 65.07461 * 24 22 21 41 41 H 1.08994 * 109.47431 * 185.07389 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1060 2.1271 -1.2579 5 6 3.4641 1.9134 -1.8750 6 1 4.1893 1.2845 -1.3800 7 6 3.7810 2.5207 -3.0716 8 7 4.9664 2.3345 -3.6099 9 14 2.5270 3.6090 -3.9275 10 1 2.6858 5.0095 -3.4599 11 1 2.7407 3.5501 -5.3958 12 1 1.1575 3.1325 -3.6071 13 6 2.3869 1.9658 1.1571 14 8 2.6924 3.1425 1.1735 15 6 2.4196 1.1773 2.4045 16 6 3.5126 1.2734 3.2700 17 6 3.5398 0.5415 4.4333 18 6 2.4783 -0.3031 4.7622 19 6 1.3961 -0.4006 3.8925 20 6 1.3572 0.3288 2.7298 21 6 0.4281 -1.3984 4.4992 22 6 1.3087 -2.0892 5.5671 23 1 1.7735 -2.9880 5.1618 24 6 0.4914 -2.4208 6.8173 25 8 2.3004 -1.0896 5.8574 26 1 -0.3633 -1.0140 0.1670 27 1 -0.3634 0.6516 0.7947 28 1 -0.3634 0.3624 -0.9616 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3357 1.7747 -1.9438 32 1 1.9593 3.1892 -1.0614 33 1 5.1891 2.7615 -4.4519 34 1 4.3386 1.9242 3.0240 35 1 4.3881 0.6205 5.0972 36 1 0.5076 0.2471 2.0680 37 1 -0.4175 -0.8893 4.9614 38 1 0.0881 -2.1152 3.7516 39 1 0.0108 -1.5154 7.1879 40 1 -0.2697 -3.1603 6.5682 41 1 1.1507 -2.8230 7.5864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596890286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:06 Heat of formation + Delta-G solvation = -53.849272 kcal Electronic energy + Delta-G solvation = -23026.522261 eV Core-core repulsion = 19678.342699 eV Total energy + Delta-G solvation = -3348.179562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.30463 -40.95371 -38.17559 -37.17779 -34.91540 -34.16573 -32.31402 -32.15728 -31.21409 -29.52911 -27.53999 -25.33709 -24.42773 -23.61308 -22.64656 -22.60550 -20.21418 -19.12855 -18.68534 -18.19974 -17.97668 -17.20602 -16.51641 -16.21425 -16.09532 -15.72832 -15.04275 -14.87643 -14.58365 -14.50588 -14.19368 -13.97764 -13.83732 -13.72396 -13.51905 -13.36185 -13.32183 -13.16059 -12.90883 -12.58207 -12.42937 -12.21607 -12.08959 -11.97741 -11.76355 -11.73884 -11.59596 -10.86164 -10.83601 -9.95936 -9.53300 -9.17662 -8.35610 -6.41507 -0.08815 0.23196 1.31932 1.36724 1.44954 1.70290 2.10715 2.28229 2.30255 2.64760 2.98503 3.32760 3.51298 3.68907 3.77860 4.05235 4.07969 4.14553 4.20693 4.26951 4.33808 4.43791 4.58436 4.69574 4.73202 4.78879 4.85030 4.88095 4.93059 4.94802 4.97339 5.05046 5.14218 5.21464 5.28008 5.31248 5.38398 5.44527 5.48857 5.60164 6.11855 6.21482 6.59084 6.60565 7.16225 7.30711 8.81409 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.003875 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.820854 B = 7224.234846 C = 7654.833180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.590 5.590 4 C 0.225 3.775 5 C -0.541 4.541 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.236 1.236 13 C 0.548 3.452 14 O -0.593 6.593 15 C -0.168 4.168 16 C -0.049 4.049 17 C -0.145 4.145 18 C 0.118 3.882 19 C -0.180 4.180 20 C -0.047 4.047 21 C -0.098 4.098 22 C 0.066 3.934 23 H 0.100 0.900 24 C -0.145 4.145 25 O -0.314 6.314 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.269 0.731 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 -13.556 18.317 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.320 5.320 4 C 0.103 3.897 5 C -0.579 4.579 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.159 1.159 13 C 0.338 3.662 14 O -0.475 6.475 15 C -0.172 4.172 16 C -0.068 4.068 17 C -0.164 4.164 18 C 0.071 3.929 19 C -0.181 4.181 20 C -0.065 4.065 21 C -0.134 4.134 22 C 0.012 3.988 23 H 0.118 0.882 24 C -0.202 4.202 25 O -0.228 6.228 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.356 -12.954 18.368 26.670 hybrid contribution 0.635 0.951 -0.930 1.474 sum -13.721 -12.003 17.438 25.227 Atomic orbital electron populations 1.22309 0.93371 1.04236 1.02495 1.22011 0.96141 0.81275 1.03883 1.47956 1.62435 1.15103 1.06474 1.19352 0.95828 0.92460 0.82057 1.21555 0.99617 1.30344 1.06394 0.95442 1.25858 0.97587 0.97432 0.97701 1.70050 1.22754 1.45611 1.20020 0.85708 0.80503 0.78953 0.77765 1.20209 1.19796 1.15895 1.18762 0.76495 0.86551 0.84406 1.90702 1.51375 1.18318 1.87115 1.19715 0.99047 1.02351 0.96047 1.20882 0.97037 0.96598 0.92291 1.20241 0.98639 0.99623 0.97860 1.19913 0.93965 0.92181 0.86806 1.20996 0.97357 1.03404 0.96334 1.21018 0.97817 0.91934 0.95714 1.22009 0.97054 0.96309 0.98070 1.23792 0.87244 0.90389 0.97420 0.88210 1.21916 0.99817 1.03196 0.95283 1.86819 1.60221 1.43154 1.32648 0.87631 0.91890 0.92388 0.90958 0.88759 0.92752 0.96173 0.92170 0.85751 0.83290 0.82180 0.87593 0.86125 0.91802 0.87631 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 9.14 71.98 0.66 -2.99 16 2 C 0.09 2.75 5.60 86.38 0.48 3.24 16 3 N -0.59 -25.28 2.46 -829.85 -2.04 -27.32 16 4 C 0.23 11.26 4.29 85.63 0.37 11.63 16 5 C -0.54 -32.56 9.94 25.60 0.25 -32.30 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.74 5.47 84.65 0.46 1.20 16 8 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 9 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 C 0.55 24.58 7.27 86.72 0.63 25.21 16 14 O -0.59 -32.14 16.55 -3.97 -0.07 -32.20 16 15 C -0.17 -5.89 5.08 -20.06 -0.10 -5.99 16 16 C -0.05 -1.62 9.67 22.45 0.22 -1.41 16 17 C -0.15 -3.92 10.05 22.41 0.23 -3.70 16 18 C 0.12 2.90 7.04 22.82 0.16 3.06 16 19 C -0.18 -3.95 6.26 -19.55 -0.12 -4.08 16 20 C -0.05 -1.22 7.40 22.43 0.17 -1.06 16 21 C -0.10 -1.24 6.65 30.74 0.20 -1.04 16 22 C 0.07 0.87 4.25 31.18 0.13 1.01 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 24 C -0.15 -1.18 9.61 71.98 0.69 -0.48 16 25 O -0.31 -6.78 10.80 -93.56 -1.01 -7.79 16 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.34 6.33 -2.38 -0.02 1.33 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 2.39 8.12 -2.39 -0.02 2.37 16 30 H 0.09 2.60 5.09 -2.39 -0.01 2.59 16 31 H 0.05 2.46 7.13 -2.38 -0.02 2.44 16 32 H 0.02 1.09 6.78 -2.39 -0.02 1.07 16 33 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.16 3.52 3.71 -2.91 -0.01 3.51 16 37 H 0.11 1.10 7.91 -2.39 -0.02 1.08 16 38 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.58 8.12 -2.38 -0.02 0.57 16 40 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -80.95 334.23 4.47 -76.48 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.98 Total: 11.93 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.43 Total: -7.70 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.74 Total: -87.45 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.08 Total: -40.00 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -80.95 4.47 -76.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596890286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.631 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds