Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99917 * 2 1 4 4 C 1.38738 * 120.05736 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94462 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05661 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94301 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.56519 * 334.31378 * 7 6 5 9 9 C 1.52998 * 117.49932 * 188.62121 * 7 6 5 10 10 C 1.52994 * 60.00207 * 252.51177 * 9 7 6 11 11 H 1.08999 * 117.50339 * 107.50994 * 10 9 7 12 12 C 1.50706 * 117.49842 * 252.50967 * 10 9 7 13 13 O 1.21281 * 119.99958 * 68.60847 * 12 10 9 14 14 N 1.34774 * 120.00041 * 248.60795 * 12 10 9 15 15 C 1.46498 * 120.00377 * 359.97438 * 14 12 10 16 16 C 1.46506 * 119.99676 * 180.02562 * 14 12 10 17 17 C 1.50698 * 109.47006 * 269.99477 * 16 14 12 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.38263 * 120.11396 * 0.24948 * 6 5 4 26 26 C 1.38152 * 120.05275 * 359.45582 * 25 6 5 27 27 H 1.08999 * 109.46963 * 59.99924 * 1 2 3 28 28 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47251 * 299.99840 * 1 2 3 30 30 H 1.07994 * 120.02493 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96953 * 180.02562 * 5 4 3 32 32 H 1.09000 * 117.50291 * 145.02332 * 9 7 6 33 33 H 1.09004 * 117.52126 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.47203 * 270.00640 * 15 14 12 35 35 H 1.08999 * 109.46777 * 29.99653 * 15 14 12 36 36 H 1.08997 * 109.47570 * 149.99964 * 15 14 12 37 37 H 1.09001 * 109.47068 * 150.00142 * 16 14 12 38 38 H 1.08993 * 109.47068 * 29.99595 * 16 14 12 39 39 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.97444 * 179.70328 * 25 6 5 41 41 H 1.07997 * 120.02413 * 180.28969 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 1 4.9890 5.0351 0.4293 9 6 3.1112 6.2570 0.2068 10 6 3.7025 5.9569 -1.1720 11 1 3.0212 5.6033 -1.9458 12 6 4.8313 6.8332 -1.6508 13 8 5.9143 6.7777 -1.1077 14 7 4.6372 7.6785 -2.6823 15 6 3.3292 7.7452 -3.3387 16 6 5.7347 8.5300 -3.1480 17 6 5.7083 9.8377 -2.3996 18 1 4.9501 10.0165 -1.6516 19 6 6.6527 10.8054 -2.6691 20 7 7.5762 10.5875 -3.5796 21 14 6.6203 12.4262 -1.7409 22 1 7.7327 13.2893 -2.2130 23 1 6.7768 12.1672 -0.2871 24 1 5.3253 13.1107 -1.9851 25 6 1.9211 3.6048 0.0068 26 6 1.2915 2.3751 0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.0208 0.3800 0.0005 31 1 5.1346 2.5751 0.0011 32 1 3.5384 7.0883 0.7675 33 1 2.0406 6.1011 0.3397 34 1 3.2968 7.0272 -4.1582 35 1 2.5479 7.5077 -2.6166 36 1 3.1695 8.7501 -3.7294 37 1 5.6197 8.7198 -4.2152 38 1 6.6853 8.0278 -2.9687 39 1 7.5933 9.7457 -4.0614 40 1 1.3342 4.5114 0.0121 41 1 0.2129 2.3203 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596912432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -23.553392 kcal Electronic energy + Delta-G solvation = -22073.946432 eV Core-core repulsion = 18727.080598 eV Total energy + Delta-G solvation = -3346.865834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49515 -39.49015 -37.98461 -35.86962 -34.82080 -32.79233 -31.25960 -30.18753 -27.82376 -27.44181 -25.91752 -24.04707 -23.76927 -22.45157 -22.02536 -20.43212 -18.48710 -18.44341 -17.10335 -16.84733 -16.21091 -16.01135 -15.61671 -15.19994 -14.88058 -14.51169 -14.03001 -13.78071 -13.68118 -13.43168 -13.01315 -12.92988 -12.32977 -12.30473 -12.24233 -12.05163 -11.80830 -11.63731 -11.41571 -11.30659 -11.00394 -10.89579 -10.59150 -10.34164 -10.30237 -10.09751 -9.17833 -9.12899 -9.02407 -8.38508 -8.15720 -7.62016 -6.38231 -4.10196 1.16787 1.19501 3.00751 3.08758 3.42520 3.46896 3.50217 3.64598 3.85638 4.17973 4.53538 4.54136 4.62061 4.67420 4.78347 4.80708 4.90160 5.00751 5.11237 5.14157 5.23050 5.31769 5.34356 5.38769 5.51502 5.62503 5.70022 5.86179 5.87286 6.01516 6.06221 6.12531 6.15985 6.27466 6.54505 6.58620 6.81147 7.12738 7.15011 7.40170 8.04017 8.29326 8.43211 8.77829 9.01740 9.59627 10.99047 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037746 B = 0.002830 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.628071 B = 9889.978477 C = 9941.788743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.148 4.148 5 C -0.070 4.070 6 C -0.080 4.080 7 C -0.086 4.086 8 H 0.126 0.874 9 C -0.147 4.147 10 C -0.171 4.171 11 H 0.118 0.882 12 C 0.534 3.466 13 O -0.542 6.542 14 N -0.595 5.595 15 C 0.085 3.915 16 C 0.235 3.765 17 C -0.605 4.605 18 H 0.051 0.949 19 C 0.019 3.981 20 N -0.909 5.909 21 Si 1.072 2.928 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.288 1.288 25 C -0.081 4.081 26 C -0.205 4.205 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.034 0.966 39 H 0.267 0.733 40 H 0.127 0.873 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 -18.033 6.145 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.167 4.167 5 C -0.088 4.088 6 C -0.081 4.081 7 C -0.104 4.104 8 H 0.144 0.856 9 C -0.184 4.184 10 C -0.193 4.193 11 H 0.136 0.864 12 C 0.320 3.680 13 O -0.419 6.419 14 N -0.326 5.326 15 C -0.059 4.059 16 C 0.115 3.885 17 C -0.644 4.644 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.545 5.545 21 Si 0.900 3.100 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.215 1.215 25 C -0.099 4.099 26 C -0.224 4.224 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.362 -16.766 6.540 23.662 hybrid contribution -1.266 -1.294 -0.318 1.839 sum -16.629 -18.060 6.222 25.326 Atomic orbital electron populations 1.23037 0.78525 1.03815 1.01360 1.86059 1.21287 1.27101 1.88915 1.19039 0.92399 0.84066 0.97263 1.20415 0.91315 0.98596 1.06358 1.20867 1.00283 0.90659 0.96967 1.19106 0.92989 0.93485 1.02473 1.21005 1.00730 0.87426 1.01254 0.85589 1.23078 0.99218 0.99349 0.96779 1.22437 1.01224 1.02521 0.93069 0.86358 1.19387 0.88016 0.80233 0.80352 1.90656 1.26471 1.68582 1.56232 1.47855 1.13022 1.39325 1.32417 1.21631 0.85040 1.02330 0.96870 1.19355 0.85222 0.89582 0.94316 1.22236 1.17119 1.00792 1.24268 0.93080 1.25825 0.92392 1.03355 0.96968 1.70801 1.33521 1.27170 1.23044 0.83503 0.76071 0.74874 0.75576 1.20642 1.21394 1.21457 1.20875 0.94032 0.97163 0.97831 1.21174 0.99865 0.92232 1.09084 0.92670 0.88349 0.92686 0.85157 0.84932 0.87669 0.87932 0.93848 0.92100 0.90832 0.96048 0.94846 0.92230 0.85503 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.23 10.50 -19.41 -0.20 -3.43 16 3 C 0.12 1.28 6.69 -39.21 -0.26 1.02 16 4 C -0.15 -1.64 9.99 -39.43 -0.39 -2.03 16 5 C -0.07 -0.82 9.73 -39.61 -0.39 -1.20 16 6 C -0.08 -0.98 5.61 -104.60 -0.59 -1.57 16 7 C -0.09 -1.20 5.55 -91.77 -0.51 -1.71 16 8 H 0.13 1.98 7.67 -51.93 -0.40 1.58 16 9 C -0.15 -1.94 9.56 -26.74 -0.26 -2.20 16 10 C -0.17 -2.65 4.43 -91.77 -0.41 -3.06 16 11 H 0.12 1.58 7.26 -51.93 -0.38 1.21 16 12 C 0.53 11.44 7.46 -10.98 -0.08 11.36 16 13 O -0.54 -13.94 15.84 5.56 0.09 -13.85 16 14 N -0.60 -13.05 2.86 -182.95 -0.52 -13.57 16 15 C 0.09 1.40 10.01 59.85 0.60 2.00 16 16 C 0.23 6.25 4.47 -5.19 -0.02 6.23 16 17 C -0.61 -17.58 9.39 -34.44 -0.32 -17.90 16 18 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 19 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 20 N -0.91 -28.04 13.65 55.43 0.76 -27.28 16 21 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.08 -0.86 9.30 -39.60 -0.37 -1.23 16 26 C -0.20 -2.03 9.04 -39.43 -0.36 -2.39 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.10 1.04 6.17 -51.93 -0.32 0.72 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16 36 H 0.07 1.24 8.07 -51.93 -0.42 0.83 16 37 H 0.02 0.57 7.94 -51.93 -0.41 0.16 16 38 H 0.03 0.99 7.29 -51.93 -0.38 0.61 16 39 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 40 H 0.13 1.14 6.01 -52.49 -0.32 0.82 16 41 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -35.26 344.79 -7.94 -43.19 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.71 Total: 0.12 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.46 Total: -11.07 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.23 Total: -40.85 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.12 Total: -17.29 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.26 -7.94 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.639 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds