Wall clock time and date at job start Tue Mar 31 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99917 * 2 1 4 4 C 1.38738 * 120.05736 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94462 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05661 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94301 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.56519 * 334.31378 * 7 6 5 9 9 C 1.52998 * 117.49932 * 188.62121 * 7 6 5 10 10 C 1.52994 * 60.00207 * 252.51177 * 9 7 6 11 11 H 1.08999 * 117.50339 * 107.50994 * 10 9 7 12 12 C 1.50706 * 117.49842 * 252.50967 * 10 9 7 13 13 O 1.21281 * 119.99958 * 68.60847 * 12 10 9 14 14 N 1.34774 * 120.00041 * 248.60795 * 12 10 9 15 15 C 1.46498 * 120.00377 * 359.97438 * 14 12 10 16 16 C 1.46506 * 119.99676 * 180.02562 * 14 12 10 17 17 C 1.50698 * 109.47006 * 269.99477 * 16 14 12 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.38263 * 120.11396 * 0.24948 * 6 5 4 26 26 C 1.38152 * 120.05275 * 359.45582 * 25 6 5 27 27 H 1.08999 * 109.46963 * 59.99924 * 1 2 3 28 28 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47251 * 299.99840 * 1 2 3 30 30 H 1.07994 * 120.02493 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96953 * 180.02562 * 5 4 3 32 32 H 1.09000 * 117.50291 * 145.02332 * 9 7 6 33 33 H 1.09004 * 117.52126 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.47203 * 270.00640 * 15 14 12 35 35 H 1.08999 * 109.46777 * 29.99653 * 15 14 12 36 36 H 1.08997 * 109.47570 * 149.99964 * 15 14 12 37 37 H 1.09001 * 109.47068 * 150.00142 * 16 14 12 38 38 H 1.08993 * 109.47068 * 29.99595 * 16 14 12 39 39 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.97444 * 179.70328 * 25 6 5 41 41 H 1.07997 * 120.02413 * 180.28969 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 1 4.9890 5.0351 0.4293 9 6 3.1112 6.2570 0.2068 10 6 3.7025 5.9569 -1.1720 11 1 3.0212 5.6033 -1.9458 12 6 4.8313 6.8332 -1.6508 13 8 5.9143 6.7777 -1.1077 14 7 4.6372 7.6785 -2.6823 15 6 3.3292 7.7452 -3.3387 16 6 5.7347 8.5300 -3.1480 17 6 5.7083 9.8377 -2.3996 18 1 4.9501 10.0165 -1.6516 19 6 6.6527 10.8054 -2.6691 20 7 7.5762 10.5875 -3.5796 21 14 6.6203 12.4262 -1.7409 22 1 7.7327 13.2893 -2.2130 23 1 6.7768 12.1672 -0.2871 24 1 5.3253 13.1107 -1.9851 25 6 1.9211 3.6048 0.0068 26 6 1.2915 2.3751 0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.0208 0.3800 0.0005 31 1 5.1346 2.5751 0.0011 32 1 3.5384 7.0883 0.7675 33 1 2.0406 6.1011 0.3397 34 1 3.2968 7.0272 -4.1582 35 1 2.5479 7.5077 -2.6166 36 1 3.1695 8.7501 -3.7294 37 1 5.6197 8.7198 -4.2152 38 1 6.6853 8.0278 -2.9687 39 1 7.5933 9.7457 -4.0614 40 1 1.3342 4.5114 0.0121 41 1 0.2129 2.3203 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596912432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:33 Heat of formation + Delta-G solvation = -45.554319 kcal Electronic energy + Delta-G solvation = -22074.900464 eV Core-core repulsion = 18727.080598 eV Total energy + Delta-G solvation = -3347.819866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45314 -40.78872 -39.02316 -37.10951 -36.53074 -34.93196 -32.04026 -31.05835 -29.62665 -28.14399 -27.42990 -25.88771 -24.68082 -23.83382 -23.17574 -21.41483 -20.05539 -19.18753 -19.04777 -18.35280 -17.24620 -16.99698 -16.61336 -16.42665 -16.26854 -15.68818 -15.66514 -15.22692 -14.64702 -14.57102 -14.22364 -14.00615 -13.80441 -13.70351 -13.61541 -13.29477 -13.17982 -12.87862 -12.84564 -12.50081 -12.41675 -12.25340 -11.96124 -11.79275 -11.45428 -11.30275 -11.22108 -10.74427 -10.63761 -9.97082 -9.50721 -8.99751 -8.71711 -6.47854 0.34212 0.38220 1.48046 1.57356 1.58161 1.77387 2.18304 2.39228 2.52922 2.63316 3.05765 3.07798 3.47321 3.69530 3.80661 3.85699 3.97732 4.05050 4.19901 4.33814 4.36937 4.40514 4.42828 4.55345 4.57353 4.64798 4.69838 4.74157 4.78032 4.86321 4.89859 4.96286 5.05331 5.10463 5.30912 5.39642 5.52150 5.68339 5.78360 5.78940 6.10914 6.41612 6.45754 6.63364 7.25246 7.37688 8.62947 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037746 B = 0.002830 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.628071 B = 9889.978477 C = 9941.788743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.095 4.095 7 C -0.082 4.082 8 H 0.097 0.903 9 C -0.126 4.126 10 C -0.175 4.175 11 H 0.151 0.849 12 C 0.522 3.478 13 O -0.601 6.601 14 N -0.604 5.604 15 C 0.080 3.920 16 C 0.244 3.756 17 C -0.616 4.616 18 H 0.046 0.954 19 C -0.034 4.034 20 N -0.931 5.931 21 Si 1.120 2.880 22 H -0.279 1.279 23 H -0.279 1.279 24 H -0.259 1.259 25 C -0.076 4.076 26 C -0.202 4.202 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.020 0.980 38 H -0.010 1.010 39 H 0.254 0.746 40 H 0.152 0.848 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.673 -18.368 6.856 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.067 3.933 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.095 4.095 7 C -0.101 4.101 8 H 0.115 0.885 9 C -0.162 4.162 10 C -0.196 4.196 11 H 0.168 0.832 12 C 0.311 3.689 13 O -0.483 6.483 14 N -0.334 5.334 15 C -0.062 4.062 16 C 0.122 3.878 17 C -0.654 4.654 18 H 0.065 0.935 19 C -0.231 4.231 20 N -0.568 5.568 21 Si 0.940 3.060 22 H -0.204 1.204 23 H -0.205 1.205 24 H -0.184 1.184 25 C -0.094 4.094 26 C -0.220 4.220 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.008 0.992 39 H 0.064 0.936 40 H 0.169 0.831 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.300 -17.135 7.227 26.802 hybrid contribution -0.090 -1.333 -0.544 1.442 sum -19.390 -18.467 6.683 27.599 Atomic orbital electron populations 1.23352 0.76394 1.05545 1.02391 1.86046 1.23544 1.26840 1.88687 1.19222 0.92448 0.84951 0.96667 1.20541 0.92111 0.98540 1.06784 1.20933 1.00353 0.91216 0.97561 1.19001 0.93928 0.92139 1.04426 1.20876 1.00101 0.89035 1.00038 0.88520 1.23233 1.01314 0.97895 0.93806 1.22334 0.99921 1.02550 0.94779 0.83192 1.20471 0.88912 0.80142 0.79331 1.90618 1.29299 1.70374 1.57983 1.47945 1.13853 1.38621 1.32999 1.21944 0.83022 1.02857 0.98407 1.18903 0.85544 0.89305 0.94034 1.22513 1.16961 1.01785 1.24156 0.93540 1.27439 0.91648 1.07089 0.96971 1.70926 1.34752 1.26756 1.24354 0.82911 0.77470 0.71020 0.74555 1.20414 1.20518 1.18398 1.21097 0.93137 0.98454 0.96703 1.21470 1.01274 0.91408 1.07865 0.91623 0.86509 0.91520 0.84556 0.85433 0.89488 0.83510 0.91211 0.88368 0.91592 0.96244 0.99155 0.93631 0.83090 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.04 10.50 -92.38 -0.97 -7.01 16 3 C 0.11 2.20 6.69 22.51 0.15 2.35 16 4 C -0.16 -3.44 9.99 22.37 0.22 -3.22 16 5 C -0.08 -1.92 9.73 22.25 0.22 -1.70 16 6 C -0.09 -2.16 5.61 -19.85 -0.11 -2.27 16 7 C -0.08 -2.24 5.55 -11.54 -0.06 -2.31 16 8 H 0.10 3.22 7.67 -2.39 -0.02 3.20 16 9 C -0.13 -2.99 9.56 30.59 0.29 -2.70 16 10 C -0.18 -5.13 4.43 -11.54 -0.05 -5.18 16 11 H 0.15 3.43 7.26 -2.39 -0.02 3.42 16 12 C 0.52 22.79 7.46 87.66 0.65 23.44 16 13 O -0.60 -32.70 15.84 -3.03 -0.05 -32.75 16 14 N -0.60 -26.71 2.86 -851.13 -2.43 -29.14 16 15 C 0.08 2.44 10.01 127.77 1.28 3.72 16 16 C 0.24 13.53 4.47 85.63 0.38 13.92 16 17 C -0.62 -36.57 9.39 25.60 0.24 -36.33 16 18 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 19 C -0.03 -1.99 5.46 84.65 0.46 -1.53 16 20 N -0.93 -59.00 13.65 21.45 0.29 -58.70 16 21 Si 1.12 51.70 29.90 68.60 2.05 53.76 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 C -0.08 -1.34 9.30 22.26 0.21 -1.13 16 26 C -0.20 -3.26 9.04 22.37 0.20 -3.05 16 27 H 0.07 0.45 7.66 -2.39 -0.02 0.44 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 30 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.15 2.19 6.17 -2.39 -0.01 2.18 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.10 2.28 6.64 -2.39 -0.02 2.27 16 36 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 37 H 0.02 1.08 7.94 -2.39 -0.02 1.06 16 38 H -0.01 -0.61 7.29 -2.39 -0.02 -0.62 16 39 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 40 H 0.15 1.85 6.01 -2.91 -0.02 1.83 16 41 H 0.16 1.56 6.30 -2.91 -0.02 1.54 16 Total: -1.00 -81.12 344.79 5.22 -75.90 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.13 Total: 12.67 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.20 Total: -14.72 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.14 Total: -87.85 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.02 Total: -39.76 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.76 kcal Total: -81.12 5.22 -75.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.349 kcal (2) G-P(sol) polarization free energy of solvation -81.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds