Wall clock time and date at job start Tue Mar 31 2020 06:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 116.99909 * 2 1 4 4 C 1.38736 * 120.05726 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94596 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05534 * 359.97164 * 5 4 3 7 7 C 1.50704 * 119.94257 * 180.02562 * 6 5 4 8 8 H 1.09003 * 115.55984 * 334.31581 * 7 6 5 9 9 C 1.53069 * 117.49290 * 188.60380 * 7 6 5 10 10 C 1.52998 * 59.98494 * 252.51282 * 9 7 6 11 11 H 1.09000 * 117.49787 * 107.49862 * 10 9 7 12 12 C 1.50703 * 117.49954 * 252.49946 * 10 9 7 13 13 O 1.21279 * 119.99926 * 68.74778 * 12 10 9 14 14 N 1.34775 * 119.99773 * 248.74378 * 12 10 9 15 15 C 1.46496 * 119.99642 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.46995 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99689 * 21 19 17 25 25 C 1.38259 * 120.11191 * 0.29874 * 6 5 4 26 26 C 1.38141 * 120.05664 * 359.45415 * 25 6 5 27 27 H 1.09009 * 109.46970 * 300.00399 * 1 2 3 28 28 H 1.08993 * 109.47493 * 60.00242 * 1 2 3 29 29 H 1.08998 * 109.47572 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.02342 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.97085 * 180.02562 * 5 4 3 32 32 H 1.09002 * 117.51457 * 145.03328 * 9 7 6 33 33 H 1.08996 * 117.51294 * 359.97438 * 9 7 6 34 34 H 0.96998 * 120.00166 * 0.02562 * 14 12 10 35 35 H 1.09001 * 109.47464 * 60.00642 * 15 14 12 36 36 H 1.09001 * 109.47459 * 300.00357 * 15 14 12 37 37 H 1.09001 * 109.47002 * 299.99701 * 16 15 14 38 38 H 1.08993 * 109.46955 * 60.00138 * 16 15 14 39 39 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.97038 * 179.69662 * 25 6 5 41 41 H 1.08004 * 120.03315 * 180.29616 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0005 7 6 3.9860 5.0186 0.0005 8 1 4.9893 5.0352 0.4263 9 6 3.1107 6.2576 0.2041 10 6 3.7017 5.9563 -1.1745 11 1 3.0201 5.6019 -1.9478 12 6 4.8301 6.8323 -1.6545 13 8 5.9141 6.7757 -1.1134 14 7 4.6347 7.6786 -2.6851 15 6 5.7318 8.5298 -3.1520 16 6 5.2484 9.3886 -4.3224 17 6 6.3771 10.2637 -4.8031 18 1 7.3426 10.2128 -4.3217 19 6 6.1770 11.1302 -5.8568 20 7 5.0012 11.1926 -6.4426 21 14 7.5759 12.2155 -6.4522 22 1 8.7079 11.3639 -6.8980 23 1 7.1068 13.0490 -7.5882 24 1 8.0254 13.0960 -5.3441 25 6 1.9211 3.6048 0.0067 26 6 1.2915 2.3752 0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 4.0208 0.3800 -0.0005 31 1 5.1345 2.5750 -0.0008 32 1 3.5380 7.0895 0.7641 33 1 2.0403 6.1015 0.3377 34 1 3.7677 7.7241 -3.1176 35 1 6.5630 7.9047 -3.4786 36 1 6.0613 9.1766 -2.3389 37 1 4.9188 8.7420 -5.1356 38 1 4.4175 10.0136 -3.9954 39 1 4.8603 11.8024 -7.1836 40 1 1.3343 4.5114 0.0120 41 1 0.2129 2.3202 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597494833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:28 Heat of formation + Delta-G solvation = -38.055943 kcal Electronic energy + Delta-G solvation = -21260.778269 eV Core-core repulsion = 17913.283557 eV Total energy + Delta-G solvation = -3347.494712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57748 -39.63633 -38.10455 -36.00265 -34.75076 -32.82939 -31.33209 -30.36900 -29.60915 -27.63243 -25.45017 -23.91234 -23.44510 -22.46332 -20.97386 -20.58521 -19.68695 -18.51237 -17.36894 -16.45382 -16.21384 -16.05438 -15.85122 -15.10604 -15.05185 -14.68897 -14.51638 -14.09242 -13.84348 -13.48340 -13.24380 -13.09465 -12.74368 -12.34455 -12.29349 -12.21448 -11.73621 -11.52337 -11.21685 -11.10154 -11.02300 -10.67774 -10.52897 -10.51019 -10.30855 -9.80778 -9.47259 -9.24675 -9.20897 -8.54272 -8.35514 -8.24074 -6.09555 -4.12533 1.09700 1.11519 2.79367 2.95892 3.31092 3.34717 3.36163 3.39384 3.66674 3.98745 4.40394 4.47029 4.53065 4.61386 4.69839 4.74984 4.77594 4.86132 5.06099 5.08658 5.14330 5.25765 5.27296 5.27335 5.42823 5.55853 5.77703 5.86502 5.91828 6.04758 6.15558 6.34386 6.34812 6.44821 6.50231 6.73320 6.92437 7.09171 7.51219 7.61295 7.88419 8.02777 8.27501 8.66042 8.93237 9.52208 11.01993 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.002254 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.902397 B =12421.448938 C =12666.889314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.085 4.085 7 C -0.081 4.081 8 H 0.127 0.873 9 C -0.147 4.147 10 C -0.176 4.176 11 H 0.123 0.877 12 C 0.534 3.466 13 O -0.551 6.551 14 N -0.717 5.717 15 C 0.121 3.879 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.080 4.080 26 C -0.205 4.205 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.399 0.601 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.128 0.872 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.682 -19.662 14.097 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.167 4.167 5 C -0.087 4.087 6 C -0.085 4.085 7 C -0.100 4.100 8 H 0.144 0.856 9 C -0.184 4.184 10 C -0.197 4.197 11 H 0.141 0.859 12 C 0.319 3.681 13 O -0.430 6.430 14 N -0.366 5.366 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.098 4.098 26 C -0.224 4.224 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.145 0.855 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.905 -19.776 14.309 26.735 hybrid contribution -0.081 0.823 -0.784 1.140 sum -10.986 -18.952 13.525 25.745 Atomic orbital electron populations 1.23049 0.78427 1.03898 1.01398 1.86062 1.21366 1.27062 1.88826 1.19056 0.92413 0.84113 0.96961 1.20421 0.91336 0.98633 1.06322 1.20853 1.00230 0.90671 0.96941 1.19075 0.93011 0.93403 1.03035 1.21001 1.00692 0.87561 1.00727 0.85556 1.23115 0.99580 0.99337 0.96393 1.22414 1.01090 1.02707 0.93468 0.85945 1.19555 0.88123 0.80177 0.80203 1.90661 1.26309 1.68638 1.57429 1.46257 1.16275 1.40453 1.33626 1.21738 0.88157 0.92064 0.98134 1.19320 0.97432 0.94202 0.91513 1.21015 0.97368 1.21592 1.16126 0.92298 1.24999 0.95845 0.97110 0.96360 1.69940 1.22192 1.37750 1.23431 0.86563 0.82224 0.80399 0.78288 1.20102 1.21242 1.20107 1.20870 0.93993 0.97208 0.97699 1.21189 0.99953 0.92233 1.08986 0.92668 0.92595 0.88291 0.85117 0.84946 0.87717 0.87685 0.76790 0.92545 0.92571 0.95936 0.95924 0.92781 0.85454 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.50 -19.41 -0.20 -3.22 16 3 C 0.12 1.20 6.69 -39.21 -0.26 0.94 16 4 C -0.15 -1.49 9.99 -39.43 -0.39 -1.89 16 5 C -0.07 -0.71 9.73 -39.61 -0.39 -1.10 16 6 C -0.08 -0.90 5.61 -104.60 -0.59 -1.49 16 7 C -0.08 -0.94 5.56 -91.73 -0.51 -1.45 16 8 H 0.13 1.62 7.67 -51.93 -0.40 1.22 16 9 C -0.15 -1.52 9.56 -26.70 -0.26 -1.77 16 10 C -0.18 -2.19 5.82 -91.77 -0.53 -2.73 16 11 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.53 9.11 7.61 -10.98 -0.08 9.03 16 13 O -0.55 -11.39 16.26 5.56 0.09 -11.30 16 14 N -0.72 -12.65 5.56 -60.29 -0.33 -12.99 16 15 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.08 -0.75 9.30 -39.61 -0.37 -1.12 16 26 C -0.20 -1.85 9.04 -39.43 -0.36 -2.20 16 27 H 0.05 0.25 7.66 -51.92 -0.40 -0.14 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 0.83 6.17 -51.93 -0.32 0.51 16 34 H 0.40 6.08 8.47 -40.82 -0.35 5.74 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 0.97 6.01 -52.49 -0.32 0.65 16 41 H 0.13 0.86 6.30 -52.48 -0.33 0.53 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -32.77 349.54 -8.64 -41.40 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.85 Total: 3.03 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.32 Total: -13.18 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.40 Total: -38.42 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.11 Total: -14.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.77 -8.64 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597494833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.347 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds