Wall clock time and date at job start Tue Mar 31 2020 06:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 116.99909 * 2 1 4 4 C 1.38736 * 120.05726 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94596 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05534 * 359.97164 * 5 4 3 7 7 C 1.50704 * 119.94257 * 180.02562 * 6 5 4 8 8 H 1.09003 * 115.55984 * 334.31581 * 7 6 5 9 9 C 1.53069 * 117.49290 * 188.60380 * 7 6 5 10 10 C 1.52998 * 59.98494 * 252.51282 * 9 7 6 11 11 H 1.09000 * 117.49787 * 107.49862 * 10 9 7 12 12 C 1.50703 * 117.49954 * 252.49946 * 10 9 7 13 13 O 1.21279 * 119.99926 * 68.74778 * 12 10 9 14 14 N 1.34775 * 119.99773 * 248.74378 * 12 10 9 15 15 C 1.46496 * 119.99642 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.46995 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99689 * 21 19 17 25 25 C 1.38259 * 120.11191 * 0.29874 * 6 5 4 26 26 C 1.38141 * 120.05664 * 359.45415 * 25 6 5 27 27 H 1.09009 * 109.46970 * 300.00399 * 1 2 3 28 28 H 1.08993 * 109.47493 * 60.00242 * 1 2 3 29 29 H 1.08998 * 109.47572 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.02342 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.97085 * 180.02562 * 5 4 3 32 32 H 1.09002 * 117.51457 * 145.03328 * 9 7 6 33 33 H 1.08996 * 117.51294 * 359.97438 * 9 7 6 34 34 H 0.96998 * 120.00166 * 0.02562 * 14 12 10 35 35 H 1.09001 * 109.47464 * 60.00642 * 15 14 12 36 36 H 1.09001 * 109.47459 * 300.00357 * 15 14 12 37 37 H 1.09001 * 109.47002 * 299.99701 * 16 15 14 38 38 H 1.08993 * 109.46955 * 60.00138 * 16 15 14 39 39 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.97038 * 179.69662 * 25 6 5 41 41 H 1.08004 * 120.03315 * 180.29616 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0005 7 6 3.9860 5.0186 0.0005 8 1 4.9893 5.0352 0.4263 9 6 3.1107 6.2576 0.2041 10 6 3.7017 5.9563 -1.1745 11 1 3.0201 5.6019 -1.9478 12 6 4.8301 6.8323 -1.6545 13 8 5.9141 6.7757 -1.1134 14 7 4.6347 7.6786 -2.6851 15 6 5.7318 8.5298 -3.1520 16 6 5.2484 9.3886 -4.3224 17 6 6.3771 10.2637 -4.8031 18 1 7.3426 10.2128 -4.3217 19 6 6.1770 11.1302 -5.8568 20 7 5.0012 11.1926 -6.4426 21 14 7.5759 12.2155 -6.4522 22 1 8.7079 11.3639 -6.8980 23 1 7.1068 13.0490 -7.5882 24 1 8.0254 13.0960 -5.3441 25 6 1.9211 3.6048 0.0067 26 6 1.2915 2.3752 0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 4.0208 0.3800 -0.0005 31 1 5.1345 2.5750 -0.0008 32 1 3.5380 7.0895 0.7641 33 1 2.0403 6.1015 0.3377 34 1 3.7677 7.7241 -3.1176 35 1 6.5630 7.9047 -3.4786 36 1 6.0613 9.1766 -2.3389 37 1 4.9188 8.7420 -5.1356 38 1 4.4175 10.0136 -3.9954 39 1 4.8603 11.8024 -7.1836 40 1 1.3343 4.5114 0.0120 41 1 0.2129 2.3202 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597494833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:27 Heat of formation + Delta-G solvation = -58.095215 kcal Electronic energy + Delta-G solvation = -21261.647237 eV Core-core repulsion = 17913.283557 eV Total energy + Delta-G solvation = -3348.363680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40517 -40.74761 -39.00242 -37.02870 -36.37039 -34.81450 -32.03073 -31.71883 -30.87266 -28.17501 -27.18823 -24.91661 -24.64522 -23.18998 -22.75078 -21.53969 -20.92579 -19.16842 -18.69507 -18.27450 -17.07425 -16.93494 -16.61432 -16.50372 -16.45428 -16.25983 -15.64327 -15.18090 -14.83692 -14.59411 -14.38799 -14.28564 -13.86779 -13.71876 -13.25331 -13.16654 -12.93618 -12.84283 -12.56153 -12.41969 -12.26741 -12.23670 -11.79289 -11.68783 -11.49044 -11.41382 -11.29873 -10.83219 -10.60832 -10.02925 -9.95504 -8.98395 -8.24683 -6.35389 0.35783 0.39808 1.41364 1.43690 1.51689 1.51992 2.20578 2.40052 2.43568 2.64626 3.08289 3.09773 3.58928 3.72997 3.83551 3.90866 3.99313 4.13389 4.24522 4.35857 4.41790 4.42150 4.47443 4.49823 4.56862 4.72171 4.73875 4.79083 4.83655 4.98867 5.08432 5.12303 5.28673 5.33114 5.41339 5.48636 5.56903 5.69339 5.77697 5.80659 6.15264 6.46295 6.62988 6.77490 7.27340 7.33808 8.86884 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.002254 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.902397 B =12421.448938 C =12666.889314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.163 4.163 5 C -0.080 4.080 6 C -0.097 4.097 7 C -0.080 4.080 8 H 0.106 0.894 9 C -0.126 4.126 10 C -0.182 4.182 11 H 0.145 0.855 12 C 0.532 3.468 13 O -0.592 6.592 14 N -0.713 5.713 15 C 0.140 3.860 16 C 0.023 3.977 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.268 1.268 25 C -0.078 4.078 26 C -0.205 4.205 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.412 0.588 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.266 0.734 40 H 0.150 0.850 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.171 -19.981 14.512 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.065 3.935 4 C -0.181 4.181 5 C -0.099 4.099 6 C -0.098 4.098 7 C -0.098 4.098 8 H 0.124 0.876 9 C -0.163 4.163 10 C -0.203 4.203 11 H 0.163 0.837 12 C 0.320 3.680 13 O -0.474 6.474 14 N -0.363 5.363 15 C 0.016 3.984 16 C -0.014 4.014 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.790 3.210 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.193 1.193 25 C -0.096 4.096 26 C -0.224 4.224 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.157 0.843 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.168 0.832 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.425 -20.112 14.730 27.854 hybrid contribution 0.333 0.839 -0.879 1.260 sum -12.092 -19.274 13.851 26.637 Atomic orbital electron populations 1.23339 0.76466 1.05518 1.02319 1.86043 1.23479 1.26958 1.88708 1.19257 0.92582 0.84879 0.96747 1.20570 0.91975 0.98774 1.06792 1.20966 1.00522 0.91042 0.97321 1.19062 0.93762 0.92623 1.04324 1.20907 1.00404 0.88682 0.99845 0.87557 1.23277 1.01213 0.98126 0.93677 1.22347 1.00157 1.02807 0.94966 0.83717 1.20324 0.88821 0.79752 0.79080 1.90641 1.28384 1.69791 1.58535 1.46091 1.15891 1.40205 1.34144 1.21230 0.88873 0.91765 0.96516 1.19126 0.96333 0.93856 0.92091 1.21441 0.98155 1.22455 1.16666 0.92360 1.25881 0.98462 0.98459 0.96428 1.70044 1.24051 1.38523 1.23894 0.85494 0.79024 0.78546 0.77954 1.19402 1.20514 1.19313 1.21109 0.93440 0.98284 0.96736 1.21468 1.01200 0.91627 1.08060 0.91534 0.91767 0.86520 0.84595 0.84919 0.88363 0.84287 0.75249 0.93753 0.93556 0.97354 0.97178 0.92498 0.83218 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.89 10.50 -92.37 -0.97 -6.86 16 3 C 0.11 2.07 6.69 22.51 0.15 2.22 16 4 C -0.16 -3.20 9.99 22.37 0.22 -2.97 16 5 C -0.08 -1.64 9.73 22.25 0.22 -1.42 16 6 C -0.10 -1.93 5.61 -19.85 -0.11 -2.04 16 7 C -0.08 -1.76 5.56 -11.52 -0.06 -1.82 16 8 H 0.11 2.78 7.67 -2.39 -0.02 2.76 16 9 C -0.13 -2.30 9.56 30.62 0.29 -2.01 16 10 C -0.18 -4.26 5.82 -11.54 -0.07 -4.32 16 11 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 12 C 0.53 18.06 7.61 87.66 0.67 18.73 16 13 O -0.59 -24.91 16.26 -3.03 -0.05 -24.96 16 14 N -0.71 -25.12 5.56 -463.06 -2.57 -27.69 16 15 C 0.14 6.13 5.61 86.38 0.48 6.61 16 16 C 0.02 1.19 5.09 29.85 0.15 1.34 16 17 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.37 5.46 84.65 0.46 0.83 16 20 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 21 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 C -0.08 -1.24 9.30 22.25 0.21 -1.03 16 26 C -0.21 -3.15 9.04 22.37 0.20 -2.95 16 27 H 0.07 0.43 7.66 -2.38 -0.02 0.41 16 28 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.14 1.60 6.17 -2.39 -0.01 1.58 16 34 H 0.41 12.30 8.47 -92.71 -0.79 11.52 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.15 1.62 6.01 -2.91 -0.02 1.61 16 41 H 0.15 1.50 6.30 -2.91 -0.02 1.49 16 Total: -1.00 -70.93 349.54 3.14 -67.79 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.25 Total: 18.25 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 4.16 Total: -18.24 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.29 Total: -81.77 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.02 Total: -31.82 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.93 3.14 -67.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597494833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.696 kcal (2) G-P(sol) polarization free energy of solvation -70.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds