Wall clock time and date at job start Tue Mar 31 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99874 * 2 1 4 4 C 1.52998 * 109.47036 * 180.02562 * 3 2 1 5 5 N 1.46501 * 115.55090 * 340.88126 * 4 3 2 6 6 C 1.46500 * 120.00251 * 290.76156 * 5 4 3 7 7 C 1.34778 * 119.99828 * 110.75827 * 5 4 3 8 8 O 1.21584 * 120.00166 * 358.72252 * 7 5 4 9 9 C 1.47643 * 119.99812 * 178.72012 * 7 5 4 10 10 C 1.40017 * 119.89914 * 338.24913 * 9 7 5 11 11 C 1.36310 * 120.10731 * 180.25749 * 10 9 7 12 12 C 1.40892 * 119.89609 * 359.47035 * 11 10 9 13 13 C 1.41106 * 120.10705 * 180.30012 * 12 11 10 14 14 H 1.07997 * 120.00016 * 145.56774 * 13 12 11 15 15 C 1.40223 * 119.99734 * 325.56946 * 13 12 11 16 16 N 1.30645 * 120.00495 * 3.44908 * 15 13 12 17 17 Si 1.86806 * 119.99569 * 183.45137 * 15 13 12 18 18 H 1.48499 * 109.47060 * 89.99861 * 17 15 13 19 19 H 1.48502 * 109.46738 * 209.99464 * 17 15 13 20 20 H 1.48497 * 109.47053 * 329.99583 * 17 15 13 21 21 C 1.40892 * 119.78814 * 0.28002 * 12 11 10 22 22 C 1.36317 * 119.89359 * 359.97438 * 21 12 11 23 23 C 1.53001 * 117.50142 * 126.55006 * 4 3 2 24 24 C 1.53004 * 117.50174 * 195.21348 * 4 3 2 25 25 H 1.08991 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46442 * 299.99752 * 1 2 3 27 27 H 1.09003 * 109.46936 * 59.99530 * 1 2 3 28 28 H 1.09006 * 109.47017 * 60.00321 * 3 2 1 29 29 H 1.08997 * 109.47390 * 299.99890 * 3 2 1 30 30 H 1.09007 * 109.46858 * 276.32352 * 6 5 4 31 31 H 1.08997 * 109.46964 * 36.31481 * 6 5 4 32 32 H 1.08996 * 109.47270 * 156.32068 * 6 5 4 33 33 H 1.08004 * 119.94280 * 0.02990 * 10 9 7 34 34 H 1.08004 * 120.05617 * 179.74916 * 11 10 9 35 35 H 0.96996 * 120.00097 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.05125 * 180.02562 * 21 12 11 37 37 H 1.07999 * 119.94634 * 179.97438 * 22 21 12 38 38 H 1.08995 * 117.50384 * 215.00363 * 23 4 3 39 39 H 1.09003 * 117.49455 * 0.02562 * 23 4 3 40 40 H 1.08995 * 117.49689 * 359.97353 * 24 4 3 41 41 H 1.08993 * 117.49878 * 144.97622 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.0669 -0.1102 0.4318 6 6 3.9449 -0.5213 1.8327 7 6 4.6681 -0.9234 -0.4592 8 8 4.7487 -0.5926 -1.6264 9 6 5.2288 -2.2159 -0.0178 10 6 5.5547 -2.4116 1.3298 11 6 6.0775 -3.6014 1.7410 12 6 6.2795 -4.6391 0.8097 13 6 6.8145 -5.8747 1.2316 14 1 6.4890 -6.7921 0.7638 15 6 7.7688 -5.9115 2.2584 16 7 8.1129 -4.8096 2.8702 17 14 8.5482 -7.5361 2.7513 18 1 9.7729 -7.7630 1.9428 19 1 8.9064 -7.4962 4.1919 20 1 7.5847 -8.6403 2.5111 21 6 5.9452 -4.4392 -0.5444 22 6 5.4277 -3.2441 -0.9471 23 6 4.3031 1.9348 -1.0910 24 6 4.3433 2.4343 0.3554 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 4.7610 -0.0878 2.4109 31 1 2.9922 -0.1733 2.2317 32 1 3.9908 -1.6083 1.8977 33 1 5.3949 -1.6173 2.0439 34 1 6.3323 -3.7501 2.7800 35 1 8.7733 -4.8351 3.5802 36 1 6.0979 -5.2319 -1.2618 37 1 5.1715 -3.0899 -1.9849 38 1 5.2035 1.4649 -1.4867 39 1 3.7215 2.5147 -1.8077 40 1 3.7882 3.3426 0.5896 41 1 5.2699 2.2930 0.9116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597940140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:31 Heat of formation + Delta-G solvation = 1.651542 kcal Electronic energy + Delta-G solvation = -23125.004327 eV Core-core repulsion = 19779.231461 eV Total energy + Delta-G solvation = -3345.772866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93425 -38.06214 -37.10286 -36.07848 -34.22622 -33.40689 -29.96423 -29.46452 -28.19426 -26.42612 -25.84421 -25.48447 -22.45958 -22.28413 -20.88222 -20.23760 -18.38029 -17.43327 -16.69888 -16.07518 -15.97093 -15.68044 -15.52104 -14.94182 -14.31895 -14.24082 -13.95456 -13.46111 -13.02702 -12.93149 -12.77342 -12.51558 -12.34649 -12.09868 -11.82859 -11.49733 -11.35493 -11.27702 -11.21775 -11.09708 -10.68462 -10.65823 -10.40275 -10.12043 -9.90716 -9.47571 -9.42111 -9.24954 -8.68147 -8.13255 -7.57997 -7.32991 -6.79937 -4.55614 2.30995 2.98756 3.02180 3.05015 3.05717 3.41645 3.59094 3.82647 3.87991 4.01088 4.64099 4.86467 4.89492 5.10350 5.20371 5.25316 5.33111 5.46867 5.52299 5.56538 5.62986 5.66490 5.74978 5.87175 5.94900 6.07228 6.21210 6.27061 6.36607 6.37905 6.83443 6.94739 7.02395 7.11185 7.21436 7.28711 7.54866 7.67586 7.87967 7.95421 8.16349 8.19900 8.51464 8.74941 8.83757 9.11533 10.09195 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.003799 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.986898 B = 7369.224974 C = 7461.166496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.095 3.905 4 C 0.099 3.901 5 N -0.577 5.577 6 C 0.071 3.929 7 C 0.577 3.423 8 O -0.565 6.565 9 C -0.262 4.262 10 C -0.099 4.099 11 C -0.167 4.167 12 C 0.124 3.876 13 C -0.453 4.453 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.795 5.795 17 Si 0.918 3.082 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.227 4.227 22 C -0.033 4.033 23 C -0.146 4.146 24 C -0.184 4.184 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.282 0.718 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 10.138 1.253 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.017 3.983 4 C 0.012 3.988 5 N -0.309 5.309 6 C -0.071 4.071 7 C 0.373 3.627 8 O -0.446 6.446 9 C -0.267 4.267 10 C -0.117 4.117 11 C -0.187 4.187 12 C 0.121 3.879 13 C -0.483 4.483 14 H 0.099 0.901 15 C -0.147 4.147 16 N -0.421 5.421 17 Si 0.743 3.257 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.247 4.247 22 C -0.052 4.052 23 C -0.183 4.183 24 C -0.222 4.222 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.783 10.201 0.851 13.488 hybrid contribution 0.207 -0.371 0.374 0.566 sum -8.575 9.830 1.224 13.102 Atomic orbital electron populations 1.22734 0.81583 1.02808 0.99419 1.88067 1.18875 1.26602 1.95190 1.22227 0.90888 0.85373 0.99788 1.20404 0.89685 0.83554 1.05151 1.46750 1.58677 1.16044 1.09422 1.22560 0.99856 1.03568 0.81153 1.18665 0.76009 0.83720 0.84290 1.90596 1.60695 1.75264 1.18094 1.18971 1.18070 0.94503 0.95120 1.21581 0.97687 0.98242 0.94206 1.21302 1.02824 0.93843 1.00721 1.17858 0.86409 0.93226 0.90364 1.19734 1.19346 0.94260 1.14923 0.90148 1.26007 0.96262 0.98202 0.94203 1.69677 1.25741 1.28259 1.18406 0.86141 0.79881 0.81514 0.78193 1.19336 1.20094 1.18472 1.20840 1.10781 0.97193 0.95853 1.20339 0.95289 0.92535 0.97036 1.23385 1.03535 1.00417 0.90978 1.23487 1.02265 0.96514 0.99926 0.89583 0.94392 0.94408 0.93077 0.92724 0.93297 0.92841 0.87185 0.86095 0.85186 0.90694 0.88397 0.88364 0.86624 0.88615 0.88449 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.66 9.95 -35.23 -0.35 -6.01 16 3 C 0.10 1.25 6.01 37.16 0.22 1.47 16 4 C 0.10 1.52 2.18 -131.82 -0.29 1.23 16 5 N -0.58 -10.52 2.43 -167.77 -0.41 -10.92 16 6 C 0.07 1.12 8.55 59.85 0.51 1.63 16 7 C 0.58 12.81 7.36 -12.42 -0.09 12.72 16 8 O -0.57 -13.64 14.06 5.29 0.07 -13.56 16 9 C -0.26 -6.16 5.65 -104.72 -0.59 -6.75 16 10 C -0.10 -2.22 7.48 -39.61 -0.30 -2.52 16 11 C -0.17 -4.16 8.61 -39.27 -0.34 -4.49 16 12 C 0.12 3.23 5.55 -106.80 -0.59 2.63 16 13 C -0.45 -11.58 9.04 -37.75 -0.34 -11.92 16 14 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 15 C 0.07 1.71 5.42 -17.31 -0.09 1.61 16 16 N -0.80 -19.64 10.60 55.56 0.59 -19.05 16 17 Si 0.92 18.03 29.56 -169.99 -5.03 13.01 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 C -0.23 -5.61 9.73 -39.27 -0.38 -6.00 16 22 C -0.03 -0.79 9.52 -39.61 -0.38 -1.17 16 23 C -0.15 -2.16 8.81 -26.69 -0.24 -2.39 16 24 C -0.18 -2.27 10.18 -26.69 -0.27 -2.55 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.64 7.89 -51.93 -0.41 0.23 16 30 H 0.05 0.70 7.43 -51.93 -0.39 0.32 16 31 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 32 H 0.11 1.93 4.49 -51.93 -0.23 1.70 16 33 H 0.12 2.35 3.99 -52.48 -0.21 2.14 16 34 H 0.13 3.29 6.13 -52.48 -0.32 2.97 16 35 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.10 2.30 7.79 -52.49 -0.41 1.89 16 38 H 0.12 2.07 6.46 -51.93 -0.34 1.73 16 39 H 0.10 1.20 8.04 -51.93 -0.42 0.78 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -29.88 336.26 -7.75 -37.62 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.64 Total: 8.88 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.05 Total: -15.02 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.18 Total: -29.98 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.28 Total: -19.58 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.88 -7.75 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597940140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.275 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds