Wall clock time and date at job start Tue Mar 31 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99874 * 2 1 4 4 C 1.52998 * 109.47036 * 180.02562 * 3 2 1 5 5 N 1.46501 * 115.55090 * 340.88126 * 4 3 2 6 6 C 1.46500 * 120.00251 * 290.76156 * 5 4 3 7 7 C 1.34778 * 119.99828 * 110.75827 * 5 4 3 8 8 O 1.21584 * 120.00166 * 358.72252 * 7 5 4 9 9 C 1.47643 * 119.99812 * 178.72012 * 7 5 4 10 10 C 1.40017 * 119.89914 * 338.24913 * 9 7 5 11 11 C 1.36310 * 120.10731 * 180.25749 * 10 9 7 12 12 C 1.40892 * 119.89609 * 359.47035 * 11 10 9 13 13 C 1.41106 * 120.10705 * 180.30012 * 12 11 10 14 14 H 1.07997 * 120.00016 * 145.56774 * 13 12 11 15 15 C 1.40223 * 119.99734 * 325.56946 * 13 12 11 16 16 N 1.30645 * 120.00495 * 3.44908 * 15 13 12 17 17 Si 1.86806 * 119.99569 * 183.45137 * 15 13 12 18 18 H 1.48499 * 109.47060 * 89.99861 * 17 15 13 19 19 H 1.48502 * 109.46738 * 209.99464 * 17 15 13 20 20 H 1.48497 * 109.47053 * 329.99583 * 17 15 13 21 21 C 1.40892 * 119.78814 * 0.28002 * 12 11 10 22 22 C 1.36317 * 119.89359 * 359.97438 * 21 12 11 23 23 C 1.53001 * 117.50142 * 126.55006 * 4 3 2 24 24 C 1.53004 * 117.50174 * 195.21348 * 4 3 2 25 25 H 1.08991 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46442 * 299.99752 * 1 2 3 27 27 H 1.09003 * 109.46936 * 59.99530 * 1 2 3 28 28 H 1.09006 * 109.47017 * 60.00321 * 3 2 1 29 29 H 1.08997 * 109.47390 * 299.99890 * 3 2 1 30 30 H 1.09007 * 109.46858 * 276.32352 * 6 5 4 31 31 H 1.08997 * 109.46964 * 36.31481 * 6 5 4 32 32 H 1.08996 * 109.47270 * 156.32068 * 6 5 4 33 33 H 1.08004 * 119.94280 * 0.02990 * 10 9 7 34 34 H 1.08004 * 120.05617 * 179.74916 * 11 10 9 35 35 H 0.96996 * 120.00097 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.05125 * 180.02562 * 21 12 11 37 37 H 1.07999 * 119.94634 * 179.97438 * 22 21 12 38 38 H 1.08995 * 117.50384 * 215.00363 * 23 4 3 39 39 H 1.09003 * 117.49455 * 0.02562 * 23 4 3 40 40 H 1.08995 * 117.49689 * 359.97353 * 24 4 3 41 41 H 1.08993 * 117.49878 * 144.97622 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.0669 -0.1102 0.4318 6 6 3.9449 -0.5213 1.8327 7 6 4.6681 -0.9234 -0.4592 8 8 4.7487 -0.5926 -1.6264 9 6 5.2288 -2.2159 -0.0178 10 6 5.5547 -2.4116 1.3298 11 6 6.0775 -3.6014 1.7410 12 6 6.2795 -4.6391 0.8097 13 6 6.8145 -5.8747 1.2316 14 1 6.4890 -6.7921 0.7638 15 6 7.7688 -5.9115 2.2584 16 7 8.1129 -4.8096 2.8702 17 14 8.5482 -7.5361 2.7513 18 1 9.7729 -7.7630 1.9428 19 1 8.9064 -7.4962 4.1919 20 1 7.5847 -8.6403 2.5111 21 6 5.9452 -4.4392 -0.5444 22 6 5.4277 -3.2441 -0.9471 23 6 4.3031 1.9348 -1.0910 24 6 4.3433 2.4343 0.3554 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 4.7610 -0.0878 2.4109 31 1 2.9922 -0.1733 2.2317 32 1 3.9908 -1.6083 1.8977 33 1 5.3949 -1.6173 2.0439 34 1 6.3323 -3.7501 2.7800 35 1 8.7733 -4.8351 3.5802 36 1 6.0979 -5.2319 -1.2618 37 1 5.1715 -3.0899 -1.9849 38 1 5.2035 1.4649 -1.4867 39 1 3.7215 2.5147 -1.8077 40 1 3.7882 3.3426 0.5896 41 1 5.2699 2.2930 0.9116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597940140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:31 Heat of formation + Delta-G solvation = -15.093830 kcal Electronic energy + Delta-G solvation = -23125.730461 eV Core-core repulsion = 19779.231461 eV Total energy + Delta-G solvation = -3346.499000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40992 -39.51133 -38.56629 -37.42215 -35.88251 -35.06039 -31.76554 -31.35356 -29.13391 -27.95164 -27.53868 -26.43614 -24.06634 -23.46375 -22.66481 -21.82141 -19.85196 -19.29161 -17.88871 -17.62884 -17.30722 -17.07978 -16.66108 -16.32617 -15.90561 -15.60807 -15.41572 -14.91060 -14.69570 -14.42067 -14.27930 -13.85290 -13.66670 -13.58845 -13.31563 -13.23685 -12.84592 -12.79037 -12.39279 -12.32518 -12.28194 -12.14790 -11.79037 -11.66009 -11.23267 -11.16440 -11.04920 -10.44981 -10.36376 -9.58870 -9.45143 -9.20954 -8.61711 -6.49101 0.48200 1.12790 1.40923 1.44467 1.54388 2.04464 2.17232 2.22226 2.57945 2.81163 2.94766 3.64192 3.78077 3.87557 3.99680 4.14881 4.24437 4.35357 4.43651 4.46478 4.49834 4.53615 4.61461 4.65252 4.72663 4.73368 4.84669 4.96152 4.97063 5.01709 5.08641 5.18507 5.24570 5.34312 5.63894 5.73000 5.86548 5.99434 6.04239 6.27324 6.31066 6.57414 6.60397 6.84390 6.92569 7.44891 8.30011 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.003799 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.986898 B = 7369.224974 C = 7461.166496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.096 3.904 4 C 0.071 3.929 5 N -0.571 5.571 6 C 0.068 3.932 7 C 0.570 3.430 8 O -0.595 6.595 9 C -0.273 4.273 10 C -0.086 4.086 11 C -0.186 4.186 12 C 0.097 3.903 13 C -0.486 4.486 14 H 0.080 0.920 15 C 0.033 3.967 16 N -0.821 5.821 17 Si 0.992 3.008 18 H -0.266 1.266 19 H -0.263 1.263 20 H -0.257 1.257 21 C -0.241 4.241 22 C -0.045 4.045 23 C -0.163 4.163 24 C -0.148 4.148 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.291 0.709 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 11.683 2.873 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.019 3.981 4 C -0.015 4.015 5 N -0.301 5.301 6 C -0.074 4.074 7 C 0.365 3.635 8 O -0.478 6.478 9 C -0.277 4.277 10 C -0.104 4.104 11 C -0.205 4.205 12 C 0.094 3.906 13 C -0.515 4.515 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.446 5.446 17 Si 0.812 3.188 18 H -0.191 1.191 19 H -0.187 1.187 20 H -0.181 1.181 21 C -0.260 4.260 22 C -0.064 4.064 23 C -0.201 4.201 24 C -0.185 4.185 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.171 0.829 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.649 11.785 2.495 15.434 hybrid contribution 0.394 -0.730 -0.154 0.843 sum -9.255 11.055 2.341 14.606 Atomic orbital electron populations 1.22883 0.79628 1.03281 1.01041 1.88004 1.21193 1.28186 1.95548 1.22344 0.88933 0.84983 1.01859 1.20950 0.91488 0.82812 1.06280 1.46722 1.57113 1.16656 1.09578 1.22591 1.02150 1.02431 0.80181 1.18510 0.76649 0.83831 0.84525 1.90578 1.62055 1.75878 1.19309 1.19307 1.17676 0.95274 0.95422 1.21891 0.95764 0.98308 0.94432 1.21318 1.04174 0.94758 1.00279 1.18203 0.87162 0.94205 0.91012 1.19985 1.20785 0.94180 1.16522 0.90170 1.26862 0.96031 1.01863 0.93493 1.69719 1.26090 1.30158 1.18677 0.85050 0.78664 0.76817 0.78257 1.19095 1.18744 1.18110 1.20965 1.11398 0.97720 0.95914 1.20477 0.95638 0.92889 0.97421 1.23340 1.02534 1.01415 0.92787 1.23568 1.01532 0.96244 0.97192 0.89837 0.92159 0.93291 0.90004 0.91468 0.91285 0.90150 0.89264 0.82878 0.85898 0.89781 0.87804 0.88344 0.90500 0.86532 0.84363 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -11.76 9.95 -148.98 -1.48 -13.25 16 3 C 0.10 2.21 6.01 71.98 0.43 2.64 16 4 C 0.07 2.00 2.18 3.60 0.01 2.01 16 5 N -0.57 -20.09 2.43 -802.97 -1.95 -22.05 16 6 C 0.07 2.00 8.55 127.77 1.09 3.09 16 7 C 0.57 25.58 7.36 86.73 0.64 26.22 16 8 O -0.59 -29.44 14.06 -3.98 -0.06 -29.50 16 9 C -0.27 -13.07 5.65 -19.93 -0.11 -13.19 16 10 C -0.09 -3.91 7.48 22.25 0.17 -3.74 16 11 C -0.19 -9.46 8.61 22.47 0.19 -9.27 16 12 C 0.10 5.21 5.55 -21.28 -0.12 5.10 16 13 C -0.49 -25.49 9.04 23.46 0.21 -25.28 16 14 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 15 C 0.03 1.59 5.42 85.35 0.46 2.05 16 16 N -0.82 -40.81 10.60 21.87 0.23 -40.58 16 17 Si 0.99 36.69 29.56 68.60 2.03 38.71 16 18 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 21 C -0.24 -12.40 9.73 22.47 0.22 -12.18 16 22 C -0.05 -2.26 9.52 22.25 0.21 -2.05 16 23 C -0.16 -4.61 8.81 30.62 0.27 -4.34 16 24 C -0.15 -3.14 10.18 30.62 0.31 -2.83 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.35 7.89 -2.39 -0.02 1.33 16 30 H 0.07 1.78 7.43 -2.38 -0.02 1.77 16 31 H 0.08 1.97 7.97 -2.39 -0.02 1.96 16 32 H 0.09 3.04 4.49 -2.39 -0.01 3.03 16 33 H 0.15 5.82 3.99 -2.91 -0.01 5.80 16 34 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 35 H 0.29 12.99 8.29 -92.71 -0.77 12.22 16 36 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.10 4.83 7.79 -2.91 -0.02 4.81 16 38 H 0.08 2.80 6.46 -2.39 -0.02 2.79 16 39 H 0.12 2.69 8.04 -2.39 -0.02 2.67 16 40 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.35 336.26 5.04 -62.32 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 1.04 Total: 34.31 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 5.24 Total: -29.97 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.72 Total: -62.62 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.54 Total: -42.75 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.71 kcal Total: -67.35 5.04 -62.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597940140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.222 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds