Wall clock time and date at job start Tue Mar 31 2020 06:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00122 * 2 1 4 4 C 1.52994 * 109.46956 * 179.97438 * 3 2 1 5 5 N 1.46504 * 115.56288 * 325.45492 * 4 3 2 6 6 C 1.46508 * 119.99457 * 269.39199 * 5 4 3 7 7 C 1.34777 * 120.00422 * 89.38929 * 5 4 3 8 8 O 1.21548 * 119.99715 * 357.49225 * 7 5 4 9 9 C 1.47882 * 120.00044 * 177.48434 * 7 5 4 10 10 C 1.39927 * 120.02265 * 45.46517 * 9 7 5 11 11 C 1.38326 * 120.35854 * 179.97438 * 10 9 7 12 12 C 1.37757 * 120.41102 * 0.02562 * 11 10 9 13 13 C 1.40747 * 120.03767 * 0.02562 * 12 11 10 14 14 C 1.41445 * 120.17414 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00114 * 31.53770 * 14 13 12 16 16 C 1.39933 * 119.99859 * 211.53479 * 14 13 12 17 17 N 1.30831 * 119.99959 * 7.83083 * 16 14 13 18 18 Si 1.86802 * 120.00095 * 187.82474 * 16 14 13 19 19 H 1.48503 * 109.47141 * 90.00379 * 18 16 14 20 20 H 1.48499 * 109.47168 * 210.00161 * 18 16 14 21 21 H 1.48501 * 109.47112 * 330.00635 * 18 16 14 22 22 C 1.38991 * 120.02836 * 225.18665 * 9 7 5 23 23 C 1.52998 * 117.49908 * 179.76422 * 4 3 2 24 24 C 1.53008 * 60.03473 * 252.51895 * 23 4 3 25 25 H 1.09000 * 109.46953 * 60.00003 * 1 2 3 26 26 H 1.08993 * 109.47445 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47006 * 300.00668 * 1 2 3 28 28 H 1.08992 * 109.47225 * 59.99523 * 3 2 1 29 29 H 1.09004 * 109.46388 * 299.99398 * 3 2 1 30 30 H 1.08999 * 109.46856 * 114.48368 * 6 5 4 31 31 H 1.09003 * 109.46458 * 234.48081 * 6 5 4 32 32 H 1.09000 * 109.47237 * 354.48058 * 6 5 4 33 33 H 1.08000 * 119.81632 * 359.95685 * 10 9 7 34 34 H 1.07999 * 119.79534 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.98191 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99826 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.20131 * 0.02562 * 22 9 7 38 38 H 1.09000 * 117.50203 * 145.02195 * 23 4 3 39 39 H 1.08994 * 117.49844 * 0.02562 * 23 4 3 40 40 H 1.08999 * 117.49477 * 107.47159 * 24 23 4 41 41 H 1.08996 * 117.49648 * 252.47719 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.0793 0.0496 0.7505 6 6 4.4201 0.2034 2.1671 7 6 4.2661 -1.1360 0.1373 8 8 3.9409 -1.2767 -1.0254 9 6 4.8667 -2.2656 0.8790 10 6 4.4279 -2.5656 2.1734 11 6 4.9845 -3.6210 2.8733 12 6 5.9773 -4.3883 2.3048 13 6 6.4324 -4.1009 1.0043 14 6 7.4520 -4.8866 0.4180 15 1 7.5389 -5.9334 0.6691 16 6 8.3481 -4.3076 -0.4875 17 7 8.3422 -3.0130 -0.6763 18 14 9.5527 -5.3830 -1.4266 19 1 8.9333 -5.8221 -2.7029 20 1 10.7863 -4.6086 -1.7158 21 1 9.8959 -6.5734 -0.6077 22 6 5.8636 -3.0337 0.2888 23 6 4.3469 2.4816 -0.0048 24 6 4.2792 1.6171 -1.2655 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.7631 -0.4243 2.7690 31 1 5.4558 -0.0971 2.3262 32 1 4.2952 1.2459 2.4598 33 1 3.6506 -1.9698 2.6285 34 1 4.6386 -3.8447 3.8716 35 1 6.4074 -5.2104 2.8576 36 1 8.9636 -2.6116 -1.3038 37 1 6.2025 -2.8082 -0.7116 38 1 5.2854 2.4905 0.5494 39 1 3.7942 3.4210 -0.0085 40 1 3.6816 1.9877 -2.0983 41 1 5.1733 1.0576 -1.5406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597941071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:35 Heat of formation + Delta-G solvation = -20.091762 kcal Electronic energy + Delta-G solvation = -23408.904464 eV Core-core repulsion = 20062.188738 eV Total energy + Delta-G solvation = -3346.715726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78995 -37.96633 -36.96199 -36.18313 -33.94711 -33.24593 -29.88968 -29.39076 -28.16208 -26.31840 -25.48482 -25.24226 -22.98571 -22.30788 -20.89475 -20.17344 -18.35659 -17.27048 -16.66737 -15.95044 -15.81250 -15.52602 -15.21813 -14.98624 -14.83012 -14.16200 -13.90505 -13.48128 -13.06979 -12.76391 -12.63036 -12.43802 -12.23808 -12.13416 -11.88095 -11.56752 -11.38625 -11.22722 -11.13194 -11.04945 -10.64910 -10.51394 -10.39848 -10.06870 -9.96674 -9.60166 -9.43463 -9.21858 -8.78074 -8.12202 -7.51503 -7.36718 -6.67941 -4.38453 2.44191 2.87945 3.11416 3.14209 3.19398 3.41497 3.51623 3.83052 3.98276 4.04626 4.68680 4.82440 4.92424 5.04721 5.24609 5.29887 5.38382 5.42159 5.55186 5.60239 5.61947 5.69527 5.71979 5.75874 5.88636 6.02733 6.14851 6.22266 6.26354 6.49248 6.74618 7.04477 7.05453 7.13588 7.28374 7.33776 7.46715 7.74976 7.87863 7.95898 8.11525 8.23967 8.57304 8.88851 8.90312 9.07463 10.27639 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.004803 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.250890 B = 5828.818051 C = 6405.923335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.096 3.904 4 C 0.103 3.897 5 N -0.584 5.584 6 C 0.087 3.913 7 C 0.579 3.421 8 O -0.532 6.532 9 C -0.119 4.119 10 C -0.208 4.208 11 C -0.104 4.104 12 C -0.205 4.205 13 C 0.102 3.898 14 C -0.465 4.465 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.806 5.806 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.093 4.093 23 C -0.172 4.172 24 C -0.152 4.152 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.280 0.720 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 10.866 2.975 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.018 3.982 4 C 0.016 3.984 5 N -0.318 5.318 6 C -0.055 4.055 7 C 0.370 3.630 8 O -0.407 6.407 9 C -0.122 4.122 10 C -0.228 4.228 11 C -0.123 4.123 12 C -0.225 4.225 13 C 0.100 3.900 14 C -0.496 4.496 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.433 5.433 18 Si 0.738 3.262 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.113 4.113 23 C -0.210 4.210 24 C -0.189 4.189 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.382 10.782 2.219 13.836 hybrid contribution 0.381 -0.102 -0.259 0.471 sum -8.001 10.680 1.960 13.488 Atomic orbital electron populations 1.22712 0.81782 1.02717 0.99210 1.88117 1.18662 1.26361 1.95113 1.22186 0.90939 0.85520 0.99564 1.20409 0.89848 0.88586 0.99591 1.47007 1.64956 1.09342 1.10460 1.21914 1.01541 1.00961 0.81116 1.18756 0.76359 0.81715 0.86125 1.90671 1.50160 1.82570 1.17324 1.19466 1.00477 0.97072 0.95195 1.20620 1.04848 1.02225 0.95058 1.20463 0.97594 0.96260 0.97951 1.21184 1.02455 1.02954 0.95913 1.17568 0.90836 0.91501 0.90118 1.19536 1.10957 0.97342 1.21734 0.90333 1.25874 0.97958 0.95124 0.95395 1.69752 1.33176 1.10768 1.29566 0.86237 0.79292 0.80479 0.80233 1.19336 1.20333 1.18699 1.21487 0.93981 0.96122 0.99733 1.23351 1.01824 0.93413 1.02378 1.23256 1.03086 1.01353 0.91238 0.94477 0.89700 0.94576 0.93287 0.92814 0.91659 0.91498 0.92049 0.88230 0.88930 0.88656 0.90920 0.85592 0.87895 0.88140 0.88290 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.12 9.72 -35.23 -0.34 -6.47 16 3 C 0.10 1.32 6.16 37.15 0.23 1.55 16 4 C 0.10 1.59 1.65 -131.78 -0.22 1.37 16 5 N -0.58 -10.75 2.73 -167.63 -0.46 -11.21 16 6 C 0.09 1.34 8.93 59.85 0.53 1.88 16 7 C 0.58 13.40 6.64 -12.31 -0.08 13.32 16 8 O -0.53 -13.77 16.13 5.32 0.09 -13.68 16 9 C -0.12 -2.90 5.14 -105.04 -0.54 -3.44 16 10 C -0.21 -4.55 8.17 -38.92 -0.32 -4.87 16 11 C -0.10 -2.27 10.01 -39.72 -0.40 -2.67 16 12 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 13 C 0.10 2.75 5.52 -106.87 -0.59 2.16 16 14 C -0.47 -12.49 9.05 -37.73 -0.34 -12.83 16 15 H 0.08 2.01 7.86 -52.49 -0.41 1.60 16 16 C 0.07 1.87 5.29 -17.34 -0.09 1.78 16 17 N -0.81 -21.50 10.90 55.55 0.61 -20.90 16 18 Si 0.91 19.26 29.57 -169.99 -5.03 14.23 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.09 -2.53 8.27 -38.44 -0.32 -2.85 16 23 C -0.17 -2.05 9.63 -26.73 -0.26 -2.30 16 24 C -0.15 -2.26 9.12 -26.68 -0.24 -2.50 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 30 H 0.07 0.99 5.48 -51.93 -0.28 0.71 16 31 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 32 H 0.06 0.74 7.63 -51.93 -0.40 0.34 16 33 H 0.10 1.93 5.51 -52.49 -0.29 1.64 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 37 H 0.13 3.70 6.35 -52.48 -0.33 3.36 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 41 H 0.10 1.82 8.11 -51.93 -0.42 1.40 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -31.65 342.61 -7.75 -39.41 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.88 Total: 6.71 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.90 Total: -13.26 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.15 Total: -32.10 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.26 Total: -20.15 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.65 -7.75 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597941071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.317 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds